RNA–Protein interactions for RNA: ENST00000469129.1

SMC1A-205, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 847 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-205ENST00000469129 PCGF6Q9BYE7 350 aa14.57□□□□□ -0.08
SMC1A-205ENST00000469129 SAMD9Q5K651 1589 aa14.54□□□□□ -0.08
SMC1A-205ENST00000469129 CFAP43Q8NDM7 1665 aa14.52□□□□□ -0.08
SMC1A-205ENST00000469129 AQRO60306 1485 aaKnown RBP eCLIP14.52□□□□□ -0.08
SMC1A-205ENST00000469129 MAGI1Q96QZ7 1491 aaPredicted RBP14.52□□□□□ -0.08
SMC1A-205ENST00000469129 IQGAP2Q13576 1575 aa14.51□□□□□ -0.09
SMC1A-205ENST00000469129 APLP2Q06481 763 aa14.49□□□□□ -0.09
SMC1A-205ENST00000469129 SNAPC4Q5SXM2 1469 aa14.49□□□□□ -0.09
SMC1A-205ENST00000469129 PCF11O94913 1555 aaKnown RBP14.47□□□□□ -0.09
SMC1A-205ENST00000469129 MAP3K1Q13233 1512 aa14.47□□□□□ -0.09
SMC1A-205ENST00000469129 RANGAP1P46060 587 aaPredicted RBP14.46□□□□□ -0.09
SMC1A-205ENST00000469129 TIAM1Q13009 1591 aa14.45□□□□□ -0.1
SMC1A-205ENST00000469129 GRIN2AQ12879 1464 aa14.44□□□□□ -0.1
SMC1A-205ENST00000469129 FYCO1Q9BQS8 1478 aa14.44□□□□□ -0.1
SMC1A-205ENST00000469129 SYNJ2O15056 1496 aa14.44□□□□□ -0.1
SMC1A-205ENST00000469129 FMN1Q68DA7 1419 aa14.41□□□□□ -0.1
SMC1A-205ENST00000469129 OSCARQ8IYS5 282 aa14.41□□□□□ -0.1
SMC1A-205ENST00000469129 UGGT2Q9NYU1 1516 aa14.41□□□□□ -0.1
SMC1A-205ENST00000469129 FHOD3Q2V2M9 1422 aa14.39□□□□□ -0.11
SMC1A-205ENST00000469129 CHD1O14646 1710 aa14.38□□□□□ -0.11
SMC1A-205ENST00000469129 KIAA0586Q9BVV6 1533 aa14.38□□□□□ -0.11
SMC1A-205ENST00000469129 HECW1Q76N89 1606 aa14.37□□□□□ -0.11
SMC1A-205ENST00000469129 PPARGC1BQ86YN6 1023 aaKnown RBP14.37□□□□□ -0.11
SMC1A-205ENST00000469129 CASKIN1Q8WXD9 1431 aa14.37□□□□□ -0.11
SMC1A-205ENST00000469129 KIAA0556O60303 1618 aa14.37□□□□□ -0.11
SMC1A-205ENST00000469129 CEP170Q5SW79 1584 aa14.36□□□□□ -0.11
SMC1A-205ENST00000469129 LRRIQ1Q96JM4 1722 aa14.35□□□□□ -0.11
SMC1A-205ENST00000469129 FBLN2P98095 1184 aa14.33□□□□□ -0.12
SMC1A-205ENST00000469129 NUP160Q12769 1436 aa14.32□□□□□ -0.12
SMC1A-205ENST00000469129 HRCP23327 699 aa14.3□□□□□ -0.12
SMC1A-205ENST00000469129 CCDC18Q5T9S5 1454 aa14.3□□□□□ -0.12
SMC1A-205ENST00000469129 LRRC9Q6ZRR7 1453 aa14.3□□□□□ -0.12
SMC1A-205ENST00000469129 TTBK1Q5TCY1 1321 aaPredicted RBP14.29□□□□□ -0.12
SMC1A-205ENST00000469129 EHBP1L1Q8N3D4 1523 aa14.27□□□□□ -0.12
SMC1A-205ENST00000469129 CHMP7Q8WUX9 453 aaPredicted RBP14.27□□□□□ -0.13
SMC1A-205ENST00000469129 SUPT6HQ7KZ85 1726 aaKnown RBP14.27□□□□□ -0.13
SMC1A-205ENST00000469129 DISP1Q96F81 1524 aa14.25□□□□□ -0.13
SMC1A-205ENST00000469129 RAPGEF6Q8TEU7 1601 aa14.25□□□□□ -0.13
SMC1A-205ENST00000469129 RRBP1Q9P2E9 1410 aaKnown RBP14.24□□□□□ -0.13
SMC1A-205ENST00000469129 P3H3Q8IVL6 736 aa14.24□□□□□ -0.13
SMC1A-205ENST00000469129 RIMBP3CA6NJZ7 1639 aa14.23□□□□□ -0.13
SMC1A-205ENST00000469129 RIMBP3BA6NNM3 1639 aa14.23□□□□□ -0.13
SMC1A-205ENST00000469129 RIMBP3Q9UFD9 1639 aa14.23□□□□□ -0.13
SMC1A-205ENST00000469129 ARHGEF11O15085 1522 aa14.22□□□□□ -0.13
SMC1A-205ENST00000469129 CARMIL2Q6F5E8 1435 aa14.22□□□□□ -0.13
SMC1A-205ENST00000469129 SHROOM2Q13796 1616 aa14.22□□□□□ -0.13
SMC1A-205ENST00000469129 CLASP1Q7Z460 1538 aa14.21□□□□□ -0.13
SMC1A-205ENST00000469129 ZEB1P37275 1124 aaPredicted RBP14.19□□□□□ -0.14
SMC1A-205ENST00000469129 KANK4Q5T7N3 995 aaPredicted RBP14.19□□□□□ -0.14
SMC1A-205ENST00000469129 EPRSP07814 1512 aaKnown RBP14.17□□□□□ -0.14
SMC1A-205ENST00000469129 MTUS2Q5JR59 1369 aa14.15□□□□□ -0.14
SMC1A-205ENST00000469129 CCNB3Q8WWL7 1395 aa14.15□□□□□ -0.14
SMC1A-205ENST00000469129 ATP1B4Q9UN42 357 aaPredicted RBP14.14□□□□□ -0.15
SMC1A-205ENST00000469129 ADCY10Q96PN6 1610 aa14.12□□□□□ -0.15
SMC1A-205ENST00000469129 CDK13Q14004 1512 aaKnown RBP14.11□□□□□ -0.15
SMC1A-205ENST00000469129 ITSN2Q9NZM3 1697 aa14.11□□□□□ -0.15
SMC1A-205ENST00000469129 ABCA8O94911 1581 aa14.11□□□□□ -0.15
SMC1A-205ENST00000469129 NUP153P49790 1475 aaKnown RBP14.1□□□□□ -0.15
SMC1A-205ENST00000469129 NCOA2Q15596 1464 aa14.1□□□□□ -0.15
SMC1A-205ENST00000469129 MAGI3Q5TCQ9 1506 aa14.1□□□□□ -0.15
SMC1A-205ENST00000469129 PHLDB1Q86UU1 1377 aa14.09□□□□□ -0.15
SMC1A-205ENST00000469129 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.09□□□□□ -0.15
SMC1A-205ENST00000469129 JPH4Q96JJ6 628 aa14.07□□□□□ -0.16
SMC1A-205ENST00000469129 PTPN23Q9H3S7 1636 aa14.07□□□□□ -0.16
SMC1A-205ENST00000469129 MYOM3Q5VTT5 1437 aa14.07□□□□□ -0.16
SMC1A-205ENST00000469129 FGD6Q6ZV73 1430 aa14.07□□□□□ -0.16
SMC1A-205ENST00000469129 CYB5RLQ6IPT4 315 aa14.06□□□□□ -0.16
SMC1A-205ENST00000469129 PRG4Q92954 1404 aaPredicted RBP14.06□□□□□ -0.16
SMC1A-205ENST00000469129 HNRNPUL2Q1KMD3 747 aaKnown RBP14.04□□□□□ -0.16
SMC1A-205ENST00000469129 CCER1Q8TC90 406 aaPredicted RBP14.03□□□□□ -0.16
SMC1A-205ENST00000469129 PLB1Q6P1J6 1458 aa14.03□□□□□ -0.16
SMC1A-205ENST00000469129 KIF14Q15058 1648 aa14.02□□□□□ -0.16
SMC1A-205ENST00000469129 ERCC6L2Q5T890 1561 aa14□□□□□ -0.17
SMC1A-205ENST00000469129 TCOF1Q13428 1488 aaKnown RBP14□□□□□ -0.17
SMC1A-205ENST00000469129 CDK11AQ9UQ88 783 aaPredicted RBP14□□□□□ -0.17
SMC1A-205ENST00000469129 GCC2Q8IWJ2 1684 aa14□□□□□ -0.17
SMC1A-205ENST00000469129 TROQ12816 1431 aaPredicted RBP13.99□□□□□ -0.17
SMC1A-205ENST00000469129 MIA2Q96PC5 1412 aa13.99□□□□□ -0.17
SMC1A-205ENST00000469129 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.99□□□□□ -0.17
SMC1A-205ENST00000469129 PTPRGP23470 1445 aa13.98□□□□□ -0.17
SMC1A-205ENST00000469129 ABCC2Q92887 1545 aa13.97□□□□□ -0.17
SMC1A-205ENST00000469129 CDC42BPAQ5VT25 1732 aa13.96□□□□□ -0.17
SMC1A-205ENST00000469129 FAM50AQ14320 339 aaKnown RBP13.95□□□□□ -0.18
SMC1A-205ENST00000469129 CROCC2H7BZ55 1655 aa13.95□□□□□ -0.18
SMC1A-205ENST00000469129 ADGBQ8N7X0 1667 aa13.95□□□□□ -0.18
SMC1A-205ENST00000469129 DNMT1P26358 1616 aaKnown RBP13.94□□□□□ -0.18
SMC1A-205ENST00000469129 UACAQ9BZF9 1416 aa13.93□□□□□ -0.18
SMC1A-205ENST00000469129 CLSPNQ9HAW4 1339 aa13.91□□□□□ -0.18
SMC1A-205ENST00000469129 SETD5Q9C0A6 1442 aa13.91□□□□□ -0.18
SMC1A-205ENST00000469129 ZCCHC11Q5TAX3 1644 aaKnown RBP13.91□□□□□ -0.18
SMC1A-205ENST00000469129 UHRF1BP1LA0JNW5 1464 aa13.91□□□□□ -0.18
SMC1A-205ENST00000469129 ATP10BO94823 1461 aa13.91□□□□□ -0.18
SMC1A-205ENST00000469129 AKNAQ7Z591 1439 aa13.9□□□□□ -0.18
SMC1A-205ENST00000469129 PREX2Q70Z35 1606 aa13.9□□□□□ -0.18
SMC1A-205ENST00000469129 MYO5CQ9NQX4 1742 aa13.9□□□□□ -0.18
SMC1A-205ENST00000469129 HFM1A2PYH4 1435 aa13.88□□□□□ -0.19
SMC1A-205ENST00000469129 DHX57Q6P158 1386 aaKnown RBP13.87□□□□□ -0.19
SMC1A-205ENST00000469129 RAB3GAP2Q9H2M9 1393 aa13.87□□□□□ -0.19
SMC1A-205ENST00000469129 ITGAEP38570 1179 aa13.87□□□□□ -0.19
SMC1A-205ENST00000469129 CAMSAP2Q08AD1 1489 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 105.8 ms