RNA–Protein interactions for RNA: ENST00000462730.5

HDAC6-213, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 1,999 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-213ENST00000462730 VPS8Q8N3P4 1428 aa22.57■■□□□ 1.2
HDAC6-213ENST00000462730 ARAP1Q96P48 1450 aa22.57■■□□□ 1.2
HDAC6-213ENST00000462730 SNAPC4Q5SXM2 1469 aa22.56■■□□□ 1.2
HDAC6-213ENST00000462730 ARHGAP35Q9NRY4 1499 aa22.56■■□□□ 1.2
HDAC6-213ENST00000462730 MAGI1Q96QZ7 1491 aaPredicted RBP22.49■■□□□ 1.19
HDAC6-213ENST00000462730 EFCAB5A4FU69 1503 aa22.44■■□□□ 1.18
HDAC6-213ENST00000462730 TTBK1Q5TCY1 1321 aaPredicted RBP22.43■■□□□ 1.18
HDAC6-213ENST00000462730 GRIN2AQ12879 1464 aa22.43■■□□□ 1.18
HDAC6-213ENST00000462730 SYNJ2O15056 1496 aa22.41■■□□□ 1.18
HDAC6-213ENST00000462730 IQGAP2Q13576 1575 aa22.38■■□□□ 1.17
HDAC6-213ENST00000462730 SAMD9Q5K651 1589 aa22.37■■□□□ 1.17
HDAC6-213ENST00000462730 FHOD3Q2V2M9 1422 aa22.35■■□□□ 1.17
HDAC6-213ENST00000462730 APLP2Q06481 763 aa22.34■■□□□ 1.17
HDAC6-213ENST00000462730 CHMP7Q8WUX9 453 aaPredicted RBP22.32■■□□□ 1.16
HDAC6-213ENST00000462730 P3H3Q8IVL6 736 aa22.31■■□□□ 1.16
HDAC6-213ENST00000462730 CEP170Q5SW79 1584 aa22.3■■□□□ 1.16
HDAC6-213ENST00000462730 KIAA0586Q9BVV6 1533 aa22.29■■□□□ 1.16
HDAC6-213ENST00000462730 PCF11O94913 1555 aaKnown RBP22.27■■□□□ 1.16
HDAC6-213ENST00000462730 FBLN2P98095 1184 aa22.27■■□□□ 1.16
HDAC6-213ENST00000462730 UGGT2Q9NYU1 1516 aa22.25■■□□□ 1.15
HDAC6-213ENST00000462730 NUP160Q12769 1436 aa22.24■■□□□ 1.15
HDAC6-213ENST00000462730 CHD1O14646 1710 aa22.22■■□□□ 1.15
HDAC6-213ENST00000462730 FMN1Q68DA7 1419 aa22.22■■□□□ 1.15
HDAC6-213ENST00000462730 FYCO1Q9BQS8 1478 aa22.19■■□□□ 1.14
HDAC6-213ENST00000462730 KIAA0556O60303 1618 aa22.17■■□□□ 1.14
HDAC6-213ENST00000462730 TIAM1Q13009 1591 aa22.17■■□□□ 1.14
HDAC6-213ENST00000462730 CASKIN1Q8WXD9 1431 aa22.16■■□□□ 1.14
HDAC6-213ENST00000462730 CFAP43Q8NDM7 1665 aa22.15■■□□□ 1.14
HDAC6-213ENST00000462730 MAP3K1Q13233 1512 aa22.15■■□□□ 1.14
HDAC6-213ENST00000462730 DISP1Q96F81 1524 aa22.15■■□□□ 1.14
HDAC6-213ENST00000462730 KANK4Q5T7N3 995 aaPredicted RBP22.12■■□□□ 1.13
HDAC6-213ENST00000462730 LRRIQ1Q96JM4 1722 aa22.07■■□□□ 1.12
HDAC6-213ENST00000462730 ATP1B4Q9UN42 357 aaPredicted RBP22.07■■□□□ 1.12
HDAC6-213ENST00000462730 LRRC9Q6ZRR7 1453 aa22.04■■□□□ 1.12
HDAC6-213ENST00000462730 HECW1Q76N89 1606 aa22.03■■□□□ 1.12
HDAC6-213ENST00000462730 JPH4Q96JJ6 628 aa22.03■■□□□ 1.12
HDAC6-213ENST00000462730 CARMIL2Q6F5E8 1435 aa22■■□□□ 1.11
HDAC6-213ENST00000462730 ZEB1P37275 1124 aaPredicted RBP21.98■■□□□ 1.11
HDAC6-213ENST00000462730 SHROOM2Q13796 1616 aa21.97■■□□□ 1.11
HDAC6-213ENST00000462730 CCDC18Q5T9S5 1454 aa21.95■■□□□ 1.1
HDAC6-213ENST00000462730 RAPGEF6Q8TEU7 1601 aa21.94■■□□□ 1.1
HDAC6-213ENST00000462730 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.94■■□□□ 1.1
HDAC6-213ENST00000462730 HNRNPUL2Q1KMD3 747 aaKnown RBP21.93■■□□□ 1.1
HDAC6-213ENST00000462730 CLASP1Q7Z460 1538 aa21.93■■□□□ 1.1
HDAC6-213ENST00000462730 PRG4Q92954 1404 aaPredicted RBP21.93■■□□□ 1.1
HDAC6-213ENST00000462730 EPRSP07814 1512 aaKnown RBP21.92■■□□□ 1.1
HDAC6-213ENST00000462730 RRBP1Q9P2E9 1410 aaKnown RBP21.9■■□□□ 1.1
HDAC6-213ENST00000462730 CDK13Q14004 1512 aaKnown RBP21.89■■□□□ 1.1
HDAC6-213ENST00000462730 NUP153P49790 1475 aaKnown RBP21.88■■□□□ 1.09
HDAC6-213ENST00000462730 CCER1Q8TC90 406 aaPredicted RBP21.88■■□□□ 1.09
HDAC6-213ENST00000462730 EHBP1L1Q8N3D4 1523 aa21.88■■□□□ 1.09
HDAC6-213ENST00000462730 PLB1Q6P1J6 1458 aa21.87■■□□□ 1.09
HDAC6-213ENST00000462730 MTUS2Q5JR59 1369 aa21.87■■□□□ 1.09
HDAC6-213ENST00000462730 MAGI3Q5TCQ9 1506 aa21.86■■□□□ 1.09
HDAC6-213ENST00000462730 PHLDB1Q86UU1 1377 aa21.84■■□□□ 1.09
HDAC6-213ENST00000462730 CCNB3Q8WWL7 1395 aa21.83■■□□□ 1.08
HDAC6-213ENST00000462730 ERCC6L2Q5T890 1561 aa21.82■■□□□ 1.08
HDAC6-213ENST00000462730 ABCA8O94911 1581 aa21.82■■□□□ 1.08
HDAC6-213ENST00000462730 SUPT6HQ7KZ85 1726 aaKnown RBP21.82■■□□□ 1.08
HDAC6-213ENST00000462730 ARID3CA6NKF2 412 aa21.81■■□□□ 1.08
HDAC6-213ENST00000462730 PTPRGP23470 1445 aa21.77■■□□□ 1.08
HDAC6-213ENST00000462730 NCOA2Q15596 1464 aa21.77■■□□□ 1.08
HDAC6-213ENST00000462730 ARHGEF11O15085 1522 aa21.74■■□□□ 1.07
HDAC6-213ENST00000462730 FGD6Q6ZV73 1430 aa21.68■■□□□ 1.06
HDAC6-213ENST00000462730 MYOM3Q5VTT5 1437 aa21.68■■□□□ 1.06
HDAC6-213ENST00000462730 UACAQ9BZF9 1416 aa21.67■■□□□ 1.06
HDAC6-213ENST00000462730 CDK11AQ9UQ88 783 aaPredicted RBP21.66■■□□□ 1.06
HDAC6-213ENST00000462730 ATP10BO94823 1461 aa21.65■■□□□ 1.06
HDAC6-213ENST00000462730 ITGAEP38570 1179 aa21.65■■□□□ 1.06
HDAC6-213ENST00000462730 TROQ12816 1431 aaPredicted RBP21.64■■□□□ 1.06
HDAC6-213ENST00000462730 FAM50AQ14320 339 aaKnown RBP21.63■■□□□ 1.05
HDAC6-213ENST00000462730 OSCARQ8IYS5 282 aa21.63■■□□□ 1.05
HDAC6-213ENST00000462730 ABCC2Q92887 1545 aa21.63■■□□□ 1.05
HDAC6-213ENST00000462730 ADCY10Q96PN6 1610 aa21.62■■□□□ 1.05
HDAC6-213ENST00000462730 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.61■■□□□ 1.05
HDAC6-213ENST00000462730 KIF14Q15058 1648 aa21.6■■□□□ 1.05
HDAC6-213ENST00000462730 PTPN23Q9H3S7 1636 aa21.6■■□□□ 1.05
HDAC6-213ENST00000462730 UHRF1BP1LA0JNW5 1464 aa21.54■■□□□ 1.04
HDAC6-213ENST00000462730 TCOF1Q13428 1488 aaKnown RBP21.53■■□□□ 1.04
HDAC6-213ENST00000462730 MIA2Q96PC5 1412 aa21.53■■□□□ 1.04
HDAC6-213ENST00000462730 PELP1Q8IZL8 1130 aaKnown RBP21.53■■□□□ 1.04
HDAC6-213ENST00000462730 ITSN2Q9NZM3 1697 aa21.52■■□□□ 1.04
HDAC6-213ENST00000462730 PLEKHD1A6NEE1 506 aa21.52■■□□□ 1.04
HDAC6-213ENST00000462730 ZCCHC11Q5TAX3 1644 aaKnown RBP21.51■■□□□ 1.03
HDAC6-213ENST00000462730 DHX57Q6P158 1386 aaKnown RBP21.5■■□□□ 1.03
HDAC6-213ENST00000462730 KDM5BQ9UGL1 1544 aa21.48■■□□□ 1.03
HDAC6-213ENST00000462730 ABCC10Q5T3U5 1492 aa21.47■■□□□ 1.03
HDAC6-213ENST00000462730 RAB3GAP2Q9H2M9 1393 aa21.47■■□□□ 1.03
HDAC6-213ENST00000462730 SETD5Q9C0A6 1442 aa21.46■■□□□ 1.03
HDAC6-213ENST00000462730 GPATCH8Q9UKJ3 1502 aaKnown RBP21.46■■□□□ 1.03
HDAC6-213ENST00000462730 CDC42BPAQ5VT25 1732 aa21.45■■□□□ 1.02
HDAC6-213ENST00000462730 PTPRKQ15262 1439 aa21.44■■□□□ 1.02
HDAC6-213ENST00000462730 CLSPNQ9HAW4 1339 aa21.4■■□□□ 1.02
HDAC6-213ENST00000462730 CAMSAP2Q08AD1 1489 aa21.39■■□□□ 1.01
HDAC6-213ENST00000462730 TTC37Q6PGP7 1564 aa21.38■■□□□ 1.01
HDAC6-213ENST00000462730 DNMT1P26358 1616 aaKnown RBP21.38■■□□□ 1.01
HDAC6-213ENST00000462730 CFDP1Q9UEE9 299 aaPredicted RBP21.37■■□□□ 1.01
HDAC6-213ENST00000462730 PREX2Q70Z35 1606 aa21.37■■□□□ 1.01
HDAC6-213ENST00000462730 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.36■■□□□ 1.01
HDAC6-213ENST00000462730 ZNF644Q9H582 1327 aaPredicted RBP21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms