RNA–Protein interactions for RNA: ENST00000462730.5

HDAC6-213, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 1,999 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-213ENST00000462730 NISCHQ9Y2I1 1504 aa32.61■■■□□ 2.81
HDAC6-213ENST00000462730 CCDC180Q9P1Z9 1646 aa28.47■■■□□ 2.15
HDAC6-213ENST00000462730 ZCCHC6Q5VYS8 1495 aaKnown RBP27.42■■□□□ 1.98
HDAC6-213ENST00000462730 DCAF1Q9Y4B6 1507 aa26.94■■□□□ 1.9
HDAC6-213ENST00000462730 ABCC9O60706 1549 aa26.92■■□□□ 1.9
HDAC6-213ENST00000462730 DCAF8L2P0C7V8 631 aa26.89■■□□□ 1.9
HDAC6-213ENST00000462730 MYO15BQ96JP2 1530 aa26.62■■□□□ 1.85
HDAC6-213ENST00000462730 SHROOM4Q9ULL8 1493 aa26.62■■□□□ 1.85
HDAC6-213ENST00000462730 NACADO15069 1562 aa26.48■■□□□ 1.83
HDAC6-213ENST00000462730 RB1CC1Q8TDY2 1594 aa26.27■■□□□ 1.8
HDAC6-213ENST00000462730 SCRIBQ14160 1630 aa26.21■■□□□ 1.79
HDAC6-213ENST00000462730 UNC13AQ9UPW8 1703 aa25.8■■□□□ 1.72
HDAC6-213ENST00000462730 SUPT5HO00267 1087 aaKnown RBP25.62■■□□□ 1.69
HDAC6-213ENST00000462730 BICRAQ9NZM4 1560 aa25.5■■□□□ 1.67
HDAC6-213ENST00000462730 PABPN1Q86U42 306 aaKnown RBP eCLIP25.35■■□□□ 1.65
HDAC6-213ENST00000462730 CECR2Q9BXF3 1484 aa25.35■■□□□ 1.65
HDAC6-213ENST00000462730 RSF1Q96T23 1441 aaPredicted RBP25.28■■□□□ 1.64
HDAC6-213ENST00000462730 MROH2BQ7Z745 1585 aa25.21■■□□□ 1.63
HDAC6-213ENST00000462730 BAZ1AQ9NRL2 1556 aaPredicted RBP25.19■■□□□ 1.62
HDAC6-213ENST00000462730 SMARCA4P51532 1647 aa25.1■■□□□ 1.61
HDAC6-213ENST00000462730 WIZO95785 1651 aa25.03■■□□□ 1.6
HDAC6-213ENST00000462730 PEG3Q9GZU2 1588 aa24.78■■□□□ 1.56
HDAC6-213ENST00000462730 TOP2AP11388 1531 aaKnown RBP24.75■■□□□ 1.55
HDAC6-213ENST00000462730 EIF4G1Q04637 1599 aaKnown RBP24.73■■□□□ 1.55
HDAC6-213ENST00000462730 ATAD2BQ9ULI0 1458 aa24.65■■□□□ 1.54
HDAC6-213ENST00000462730 SMARCA2P51531 1590 aa24.65■■□□□ 1.54
HDAC6-213ENST00000462730 CHIC1Q5VXU3 224 aa24.62■■□□□ 1.53
HDAC6-213ENST00000462730 BAZ1BQ9UIG0 1483 aaKnown RBP24.53■■□□□ 1.52
HDAC6-213ENST00000462730 CCDC88BA6NC98 1476 aa24.47■■□□□ 1.51
HDAC6-213ENST00000462730 HMGXB3Q12766 1538 aa24.43■■□□□ 1.5
HDAC6-213ENST00000462730 NCAPD3P42695 1498 aa24.42■■□□□ 1.5
HDAC6-213ENST00000462730 CC2D2AQ9P2K1 1620 aa24.37■■□□□ 1.49
HDAC6-213ENST00000462730 TRIM41Q8WV44 630 aa24.03■■□□□ 1.44
HDAC6-213ENST00000462730 ABCC8Q09428 1581 aa24.01■■□□□ 1.43
HDAC6-213ENST00000462730 CFTRP13569 1480 aa23.9■■□□□ 1.42
HDAC6-213ENST00000462730 PRDM2Q13029 1718 aa23.84■■□□□ 1.41
HDAC6-213ENST00000462730 WRNQ14191 1432 aaPredicted RBP eCLIP23.81■■□□□ 1.4
HDAC6-213ENST00000462730 CADPSQ9ULU8 1353 aa23.8■■□□□ 1.4
HDAC6-213ENST00000462730 SYNJ1O43426 1573 aa23.75■■□□□ 1.39
HDAC6-213ENST00000462730 DNAJC5BQ9UF47 199 aa23.73■■□□□ 1.39
HDAC6-213ENST00000462730 LOC105371045A0A1W2PR82 267 aa23.72■■□□□ 1.39
HDAC6-213ENST00000462730 FAM9AQ8IZU1 332 aaPredicted RBP23.66■■□□□ 1.38
HDAC6-213ENST00000462730 NESP48681 1621 aa23.64■■□□□ 1.38
HDAC6-213ENST00000462730 TOP2BQ02880 1626 aa23.64■■□□□ 1.37
HDAC6-213ENST00000462730 LAMC3Q9Y6N6 1575 aa23.63■■□□□ 1.37
HDAC6-213ENST00000462730 BIVM-ERCC5R4GMW8 1640 aa23.62■■□□□ 1.37
HDAC6-213ENST00000462730 CUX1P39880 1505 aa23.58■■□□□ 1.36
HDAC6-213ENST00000462730 FANCD2Q9BXW9 1451 aa23.57■■□□□ 1.36
HDAC6-213ENST00000462730 SOGA1O94964 1423 aa23.51■■□□□ 1.35
HDAC6-213ENST00000462730 RUSC2Q8N2Y8 1516 aa23.44■■□□□ 1.34
HDAC6-213ENST00000462730 EEA1Q15075 1411 aa23.43■■□□□ 1.34
HDAC6-213ENST00000462730 CEP164Q9UPV0 1460 aa23.43■■□□□ 1.34
HDAC6-213ENST00000462730 PDS5BQ9NTI5 1447 aa23.41■■□□□ 1.34
HDAC6-213ENST00000462730 KIF21AQ7Z4S6 1674 aa23.39■■□□□ 1.34
HDAC6-213ENST00000462730 EHMT2Q96KQ7 1210 aa23.37■■□□□ 1.33
HDAC6-213ENST00000462730 DNMBPQ6XZF7 1577 aa23.37■■□□□ 1.33
HDAC6-213ENST00000462730 FGD5Q6ZNL6 1462 aa23.32■■□□□ 1.32
HDAC6-213ENST00000462730 TOPBP1Q92547 1522 aa23.32■■□□□ 1.32
HDAC6-213ENST00000462730 CSRNP3Q8WYN3 585 aa23.28■■□□□ 1.32
HDAC6-213ENST00000462730 URB2Q14146 1524 aaKnown RBP23.28■■□□□ 1.32
HDAC6-213ENST00000462730 POLA1P09884 1462 aaPredicted RBP23.21■■□□□ 1.31
HDAC6-213ENST00000462730 KIF27Q86VH2 1401 aa23.19■■□□□ 1.3
HDAC6-213ENST00000462730 KIF21BO75037 1637 aa23.18■■□□□ 1.3
HDAC6-213ENST00000462730 CUX2O14529 1486 aa23.16■■□□□ 1.3
HDAC6-213ENST00000462730 GOLGA3Q08378 1498 aa23.14■■□□□ 1.3
HDAC6-213ENST00000462730 MRC2Q9UBG0 1479 aa23.14■■□□□ 1.3
HDAC6-213ENST00000462730 RAD54L2Q9Y4B4 1467 aa23.13■■□□□ 1.29
HDAC6-213ENST00000462730 ABCA10Q8WWZ4 1543 aa23.1■■□□□ 1.29
HDAC6-213ENST00000462730 WDR97A6NE52 1622 aa23.08■■□□□ 1.29
HDAC6-213ENST00000462730 ERCC6Q03468 1493 aa23.08■■□□□ 1.29
HDAC6-213ENST00000462730 RAPGEF2Q9Y4G8 1499 aa23.05■■□□□ 1.28
HDAC6-213ENST00000462730 WDR62O43379 1518 aa23.04■■□□□ 1.28
HDAC6-213ENST00000462730 PRXQ9BXM0 1461 aa23.04■■□□□ 1.28
HDAC6-213ENST00000462730 TNIKQ9UKE5 1360 aa23.03■■□□□ 1.28
HDAC6-213ENST00000462730 ERICH3Q5RHP9 1530 aa23.02■■□□□ 1.28
HDAC6-213ENST00000462730 UBTFP17480 764 aaKnown RBP23■■□□□ 1.27
HDAC6-213ENST00000462730 THOC2Q8NI27 1593 aaKnown RBP23■■□□□ 1.27
HDAC6-213ENST00000462730 TARBP1Q13395 1621 aaKnown RBP22.98■■□□□ 1.27
HDAC6-213ENST00000462730 CEP162Q5TB80 1403 aa22.97■■□□□ 1.27
HDAC6-213ENST00000462730 IGF1RP08069 1367 aa22.96■■□□□ 1.27
HDAC6-213ENST00000462730 ABCA5Q8WWZ7 1642 aa22.95■■□□□ 1.26
HDAC6-213ENST00000462730 PCGF6Q9BYE7 350 aa22.89■■□□□ 1.26
HDAC6-213ENST00000462730 TDRD9Q8NDG6 1382 aaKnown RBP22.88■■□□□ 1.25
HDAC6-213ENST00000462730 GAPVD1Q14C86 1478 aa22.86■■□□□ 1.25
HDAC6-213ENST00000462730 CARMIL1Q5VZK9 1371 aa22.86■■□□□ 1.25
HDAC6-213ENST00000462730 CUL7Q14999 1698 aa22.85■■□□□ 1.25
HDAC6-213ENST00000462730 IFT140Q96RY7 1462 aa22.84■■□□□ 1.25
HDAC6-213ENST00000462730 PBRM1Q86U86 1689 aa22.8■■□□□ 1.24
HDAC6-213ENST00000462730 TRIM26Q12899 539 aaPredicted RBP22.79■■□□□ 1.24
HDAC6-213ENST00000462730 CLIP1P30622 1438 aa22.76■■□□□ 1.23
HDAC6-213ENST00000462730 ZNF608Q9ULD9 1512 aaPredicted RBP22.75■■□□□ 1.23
HDAC6-213ENST00000462730 AQRO60306 1485 aaKnown RBP eCLIP22.75■■□□□ 1.231e-14■■■■■ 33.6
HDAC6-213ENST00000462730 EIF4G3O43432 1585 aaKnown RBP22.71■■□□□ 1.23
HDAC6-213ENST00000462730 GRIN2BQ13224 1484 aa22.67■■□□□ 1.22
HDAC6-213ENST00000462730 HRCP23327 699 aa22.67■■□□□ 1.22
HDAC6-213ENST00000462730 RANGAP1P46060 587 aaPredicted RBP22.67■■□□□ 1.22
HDAC6-213ENST00000462730 ADAMTS12P58397 1594 aa22.65■■□□□ 1.22
HDAC6-213ENST00000462730 PPARGC1BQ86YN6 1023 aaKnown RBP22.63■■□□□ 1.21
HDAC6-213ENST00000462730 CTTNBP2Q8WZ74 1663 aa22.62■■□□□ 1.21
HDAC6-213ENST00000462730 FHAD1B1AJZ9 1412 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 107.9 ms