RNA–Protein interactions for RNA: ENST00000439724.7

SMAD3-202, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,530 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-202ENST00000439724 ADAMTS12P58397 1594 aa18.07■□□□□ 0.48
SMAD3-202ENST00000439724 GRIN2BQ13224 1484 aa18.06■□□□□ 0.48
SMAD3-202ENST00000439724 ZEB1P37275 1124 aaPredicted RBP18.06■□□□□ 0.48
SMAD3-202ENST00000439724 MAP3K1Q13233 1512 aa18.06■□□□□ 0.48
SMAD3-202ENST00000439724 FHAD1B1AJZ9 1412 aa18.05■□□□□ 0.48
SMAD3-202ENST00000439724 AQRO60306 1485 aaKnown RBP eCLIP18.04■□□□□ 0.481e-6■■■■□ 21.5
SMAD3-202ENST00000439724 SAMD9Q5K651 1589 aa18.01■□□□□ 0.47
SMAD3-202ENST00000439724 ZNF608Q9ULD9 1512 aaPredicted RBP18■□□□□ 0.47
SMAD3-202ENST00000439724 PCF11O94913 1555 aaKnown RBP17.99■□□□□ 0.47
SMAD3-202ENST00000439724 TIAM1Q13009 1591 aa17.99■□□□□ 0.47
SMAD3-202ENST00000439724 EIF4G3O43432 1585 aaKnown RBP17.98■□□□□ 0.47
SMAD3-202ENST00000439724 CFAP43Q8NDM7 1665 aa17.97■□□□□ 0.47
SMAD3-202ENST00000439724 FHOD3Q2V2M9 1422 aa17.96■□□□□ 0.47
SMAD3-202ENST00000439724 FYCO1Q9BQS8 1478 aa17.95■□□□□ 0.46
SMAD3-202ENST00000439724 KANK4Q5T7N3 995 aaPredicted RBP17.95■□□□□ 0.46
SMAD3-202ENST00000439724 CASKIN1Q8WXD9 1431 aa17.93■□□□□ 0.46
SMAD3-202ENST00000439724 FMN1Q68DA7 1419 aa17.92■□□□□ 0.46
SMAD3-202ENST00000439724 IQGAP2Q13576 1575 aa17.92■□□□□ 0.46
SMAD3-202ENST00000439724 SNAPC4Q5SXM2 1469 aa17.9■□□□□ 0.46
SMAD3-202ENST00000439724 RRBP1Q9P2E9 1410 aaKnown RBP17.9■□□□□ 0.46
SMAD3-202ENST00000439724 LRRC9Q6ZRR7 1453 aa17.89■□□□□ 0.45
SMAD3-202ENST00000439724 MAGI1Q96QZ7 1491 aaPredicted RBP17.89■□□□□ 0.45
SMAD3-202ENST00000439724 P3H3Q8IVL6 736 aa17.88■□□□□ 0.45
SMAD3-202ENST00000439724 GRIN2AQ12879 1464 aa17.85■□□□□ 0.45
SMAD3-202ENST00000439724 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.85■□□□□ 0.45
SMAD3-202ENST00000439724 UGGT2Q9NYU1 1516 aa17.85■□□□□ 0.45
SMAD3-202ENST00000439724 CCER1Q8TC90 406 aaPredicted RBP17.82■□□□□ 0.44
SMAD3-202ENST00000439724 KIAA0586Q9BVV6 1533 aa17.82■□□□□ 0.44
SMAD3-202ENST00000439724 SYNJ2O15056 1496 aa17.81■□□□□ 0.44
SMAD3-202ENST00000439724 HNRNPUL2Q1KMD3 747 aaKnown RBP17.79■□□□□ 0.44
SMAD3-202ENST00000439724 CCNB3Q8WWL7 1395 aa17.78■□□□□ 0.44
SMAD3-202ENST00000439724 LRRIQ1Q96JM4 1722 aa17.78■□□□□ 0.44
SMAD3-202ENST00000439724 KIAA0556O60303 1618 aa17.74■□□□□ 0.43
SMAD3-202ENST00000439724 CEP170Q5SW79 1584 aa17.74■□□□□ 0.43
SMAD3-202ENST00000439724 HECW1Q76N89 1606 aa17.74■□□□□ 0.43
SMAD3-202ENST00000439724 PHLDB1Q86UU1 1377 aa17.72■□□□□ 0.43
SMAD3-202ENST00000439724 CCDC18Q5T9S5 1454 aa17.72■□□□□ 0.43
SMAD3-202ENST00000439724 ATP1B4Q9UN42 357 aaPredicted RBP17.72■□□□□ 0.43
SMAD3-202ENST00000439724 NUP160Q12769 1436 aa17.71■□□□□ 0.43
SMAD3-202ENST00000439724 DISP1Q96F81 1524 aa17.71■□□□□ 0.43
SMAD3-202ENST00000439724 EHBP1L1Q8N3D4 1523 aa17.69■□□□□ 0.42
SMAD3-202ENST00000439724 CHMP7Q8WUX9 453 aaPredicted RBP17.69■□□□□ 0.42
SMAD3-202ENST00000439724 MTUS2Q5JR59 1369 aa17.66■□□□□ 0.42
SMAD3-202ENST00000439724 SUPT6HQ7KZ85 1726 aaKnown RBP17.65■□□□□ 0.42
SMAD3-202ENST00000439724 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.64■□□□□ 0.42
SMAD3-202ENST00000439724 EPRSP07814 1512 aaKnown RBP17.64■□□□□ 0.41
SMAD3-202ENST00000439724 ARHGEF11O15085 1522 aa17.61■□□□□ 0.41
SMAD3-202ENST00000439724 MAGI3Q5TCQ9 1506 aa17.61■□□□□ 0.41
SMAD3-202ENST00000439724 NCOA2Q15596 1464 aa17.61■□□□□ 0.41
SMAD3-202ENST00000439724 RAPGEF6Q8TEU7 1601 aa17.6■□□□□ 0.41
SMAD3-202ENST00000439724 FGD6Q6ZV73 1430 aa17.59■□□□□ 0.41
SMAD3-202ENST00000439724 FBLN2P98095 1184 aa17.57■□□□□ 0.4
SMAD3-202ENST00000439724 CDK13Q14004 1512 aaKnown RBP17.57■□□□□ 0.4
SMAD3-202ENST00000439724 MYOM3Q5VTT5 1437 aa17.56■□□□□ 0.4
SMAD3-202ENST00000439724 CARMIL2Q6F5E8 1435 aa17.56■□□□□ 0.4
SMAD3-202ENST00000439724 CLSPNQ9HAW4 1339 aa17.56■□□□□ 0.4
SMAD3-202ENST00000439724 DHX57Q6P158 1386 aaKnown RBP17.55■□□□□ 0.4
SMAD3-202ENST00000439724 CHD1O14646 1710 aa17.55■□□□□ 0.4
SMAD3-202ENST00000439724 NUP153P49790 1475 aaKnown RBP17.55■□□□□ 0.4
SMAD3-202ENST00000439724 FAM50AQ14320 339 aaKnown RBP17.52■□□□□ 0.4
SMAD3-202ENST00000439724 JPH4Q96JJ6 628 aa17.52■□□□□ 0.4
SMAD3-202ENST00000439724 ITGAEP38570 1179 aa17.51■□□□□ 0.39
SMAD3-202ENST00000439724 SETD5Q9C0A6 1442 aa17.5■□□□□ 0.39
SMAD3-202ENST00000439724 RAB3GAP2Q9H2M9 1393 aa17.49■□□□□ 0.39
SMAD3-202ENST00000439724 PTPN23Q9H3S7 1636 aa17.49■□□□□ 0.39
SMAD3-202ENST00000439724 TCOF1Q13428 1488 aaKnown RBP17.48■□□□□ 0.39
SMAD3-202ENST00000439724 SHROOM2Q13796 1616 aa17.46■□□□□ 0.39
SMAD3-202ENST00000439724 ABCA8O94911 1581 aa17.46■□□□□ 0.39
SMAD3-202ENST00000439724 PLB1Q6P1J6 1458 aa17.46■□□□□ 0.39
SMAD3-202ENST00000439724 MIA2Q96PC5 1412 aa17.45■□□□□ 0.38
SMAD3-202ENST00000439724 ADCY10Q96PN6 1610 aa17.42■□□□□ 0.38
SMAD3-202ENST00000439724 CDK11AQ9UQ88 783 aaPredicted RBP17.42■□□□□ 0.38
SMAD3-202ENST00000439724 PRG4Q92954 1404 aaPredicted RBP17.41■□□□□ 0.38
SMAD3-202ENST00000439724 TROQ12816 1431 aaPredicted RBP17.41■□□□□ 0.38
SMAD3-202ENST00000439724 PTPRKQ15262 1439 aa17.39■□□□□ 0.37
SMAD3-202ENST00000439724 HFM1A2PYH4 1435 aa17.38■□□□□ 0.37
SMAD3-202ENST00000439724 ARID3CA6NKF2 412 aa17.38■□□□□ 0.37
SMAD3-202ENST00000439724 MAPKBP1O60336 1514 aa17.37■□□□□ 0.37
SMAD3-202ENST00000439724 ITSN2Q9NZM3 1697 aa17.35■□□□□ 0.37
SMAD3-202ENST00000439724 CLASP1Q7Z460 1538 aa17.35■□□□□ 0.37
SMAD3-202ENST00000439724 AKNAQ7Z591 1439 aa17.35■□□□□ 0.37
SMAD3-202ENST00000439724 PTPRGP23470 1445 aa17.34■□□□□ 0.37
SMAD3-202ENST00000439724 GCC2Q8IWJ2 1684 aa17.34■□□□□ 0.37
SMAD3-202ENST00000439724 ATP10BO94823 1461 aa17.32■□□□□ 0.36
SMAD3-202ENST00000439724 NAIPQ13075 1403 aa17.32■□□□□ 0.36
SMAD3-202ENST00000439724 KIF14Q15058 1648 aa17.31■□□□□ 0.36
SMAD3-202ENST00000439724 DNMT1P26358 1616 aaKnown RBP17.31■□□□□ 0.36
SMAD3-202ENST00000439724 GPATCH8Q9UKJ3 1502 aaKnown RBP17.27■□□□□ 0.35
SMAD3-202ENST00000439724 UACAQ9BZF9 1416 aa17.27■□□□□ 0.35
SMAD3-202ENST00000439724 ERCC6L2Q5T890 1561 aa17.26■□□□□ 0.35
SMAD3-202ENST00000439724 DAPK1P53355 1430 aa17.26■□□□□ 0.35
SMAD3-202ENST00000439724 ZNF316A6NFI3 1004 aaPredicted RBP17.26■□□□□ 0.35
SMAD3-202ENST00000439724 ABCC10Q5T3U5 1492 aa17.25■□□□□ 0.35
SMAD3-202ENST00000439724 PLEKHD1A6NEE1 506 aa17.24■□□□□ 0.35
SMAD3-202ENST00000439724 CAMSAP2Q08AD1 1489 aa17.24■□□□□ 0.35
SMAD3-202ENST00000439724 CDC42BPAQ5VT25 1732 aa17.23■□□□□ 0.35
SMAD3-202ENST00000439724 ROCK1Q13464 1354 aa17.23■□□□□ 0.35
SMAD3-202ENST00000439724 ABCC2Q92887 1545 aa17.23■□□□□ 0.35
SMAD3-202ENST00000439724 ABCC5O15440 1437 aa17.22■□□□□ 0.35
SMAD3-202ENST00000439724 CROCC2H7BZ55 1655 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms