RNA–Protein interactions for RNA: ENST00000439724.7

SMAD3-202, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,530 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-202ENST00000439724 NISCHQ9Y2I1 1504 aa26.15■■□□□ 1.78
SMAD3-202ENST00000439724 CCDC180Q9P1Z9 1646 aa22.73■■□□□ 1.23
SMAD3-202ENST00000439724 ZCCHC6Q5VYS8 1495 aaKnown RBP22.05■■□□□ 1.12
SMAD3-202ENST00000439724 DCAF1Q9Y4B6 1507 aa21.66■■□□□ 1.06
SMAD3-202ENST00000439724 SHROOM4Q9ULL8 1493 aa21.45■■□□□ 1.02
SMAD3-202ENST00000439724 DCAF8L2P0C7V8 631 aa21.38■■□□□ 1.01
SMAD3-202ENST00000439724 MYO15BQ96JP2 1530 aa21.31■■□□□ 1
SMAD3-202ENST00000439724 ABCC9O60706 1549 aa21.15■□□□□ 0.98
SMAD3-202ENST00000439724 NACADO15069 1562 aa21.07■□□□□ 0.96
SMAD3-202ENST00000439724 SCRIBQ14160 1630 aa20.89■□□□□ 0.93
SMAD3-202ENST00000439724 RB1CC1Q8TDY2 1594 aa20.81■□□□□ 0.92
SMAD3-202ENST00000439724 SUPT5HO00267 1087 aaKnown RBP20.76■□□□□ 0.91
SMAD3-202ENST00000439724 UNC13AQ9UPW8 1703 aa20.44■□□□□ 0.86
SMAD3-202ENST00000439724 RSF1Q96T23 1441 aaPredicted RBP20.38■□□□□ 0.85
SMAD3-202ENST00000439724 CECR2Q9BXF3 1484 aa20.28■□□□□ 0.84
SMAD3-202ENST00000439724 MROH2BQ7Z745 1585 aa20.21■□□□□ 0.83
SMAD3-202ENST00000439724 BICRAQ9NZM4 1560 aa20.2■□□□□ 0.82
SMAD3-202ENST00000439724 BAZ1AQ9NRL2 1556 aaPredicted RBP20.18■□□□□ 0.82
SMAD3-202ENST00000439724 SMARCA4P51532 1647 aa20.07■□□□□ 0.8
SMAD3-202ENST00000439724 WIZO95785 1651 aa20.07■□□□□ 0.8
SMAD3-202ENST00000439724 CHIC1Q5VXU3 224 aa20.06■□□□□ 0.8
SMAD3-202ENST00000439724 PABPN1Q86U42 306 aaKnown RBP eCLIP19.97■□□□□ 0.79
SMAD3-202ENST00000439724 TOP2AP11388 1531 aaKnown RBP19.89■□□□□ 0.77
SMAD3-202ENST00000439724 PEG3Q9GZU2 1588 aa19.82■□□□□ 0.76
SMAD3-202ENST00000439724 SMARCA2P51531 1590 aa19.7■□□□□ 0.74
SMAD3-202ENST00000439724 EIF4G1Q04637 1599 aaKnown RBP19.7■□□□□ 0.74
SMAD3-202ENST00000439724 CCDC88BA6NC98 1476 aa19.65■□□□□ 0.74
SMAD3-202ENST00000439724 ATAD2BQ9ULI0 1458 aa19.64■□□□□ 0.73
SMAD3-202ENST00000439724 BAZ1BQ9UIG0 1483 aaKnown RBP19.54■□□□□ 0.72
SMAD3-202ENST00000439724 TRIM41Q8WV44 630 aa19.51■□□□□ 0.71
SMAD3-202ENST00000439724 HMGXB3Q12766 1538 aa19.45■□□□□ 0.7
SMAD3-202ENST00000439724 NCAPD3P42695 1498 aa19.43■□□□□ 0.7
SMAD3-202ENST00000439724 ABCC8Q09428 1581 aa19.33■□□□□ 0.68
SMAD3-202ENST00000439724 LOC105371045A0A1W2PR82 267 aa19.26■□□□□ 0.67
SMAD3-202ENST00000439724 CC2D2AQ9P2K1 1620 aa19.19■□□□□ 0.66
SMAD3-202ENST00000439724 WRNQ14191 1432 aaPredicted RBP eCLIP19.18■□□□□ 0.66
SMAD3-202ENST00000439724 FAM9AQ8IZU1 332 aaPredicted RBP19.14■□□□□ 0.65
SMAD3-202ENST00000439724 SYNJ1O43426 1573 aa19.11■□□□□ 0.65
SMAD3-202ENST00000439724 CFTRP13569 1480 aa19.08■□□□□ 0.64
SMAD3-202ENST00000439724 EEA1Q15075 1411 aa19.08■□□□□ 0.64
SMAD3-202ENST00000439724 PRDM2Q13029 1718 aa19.06■□□□□ 0.64
SMAD3-202ENST00000439724 TOP2BQ02880 1626 aa19.02■□□□□ 0.63
SMAD3-202ENST00000439724 BIVM-ERCC5R4GMW8 1640 aa19.01■□□□□ 0.63
SMAD3-202ENST00000439724 SOGA1O94964 1423 aa19■□□□□ 0.63
SMAD3-202ENST00000439724 CADPSQ9ULU8 1353 aa18.93■□□□□ 0.62
SMAD3-202ENST00000439724 RUSC2Q8N2Y8 1516 aa18.92■□□□□ 0.62
SMAD3-202ENST00000439724 CUX1P39880 1505 aa18.89■□□□□ 0.61
SMAD3-202ENST00000439724 CSRNP3Q8WYN3 585 aa18.88■□□□□ 0.61
SMAD3-202ENST00000439724 KIF21BO75037 1637 aa18.83■□□□□ 0.61
SMAD3-202ENST00000439724 EHMT2Q96KQ7 1210 aa18.82■□□□□ 0.6
SMAD3-202ENST00000439724 GOLGA3Q08378 1498 aa18.81■□□□□ 0.6
SMAD3-202ENST00000439724 TNIKQ9UKE5 1360 aa18.79■□□□□ 0.6
SMAD3-202ENST00000439724 CEP164Q9UPV0 1460 aa18.78■□□□□ 0.6
SMAD3-202ENST00000439724 LAMC3Q9Y6N6 1575 aa18.74■□□□□ 0.59
SMAD3-202ENST00000439724 FANCD2Q9BXW9 1451 aa18.73■□□□□ 0.59
SMAD3-202ENST00000439724 CEP162Q5TB80 1403 aa18.71■□□□□ 0.59
SMAD3-202ENST00000439724 NESP48681 1621 aa18.67■□□□□ 0.58
SMAD3-202ENST00000439724 PCGF6Q9BYE7 350 aa18.67■□□□□ 0.58
SMAD3-202ENST00000439724 KIF27Q86VH2 1401 aa18.66■□□□□ 0.58
SMAD3-202ENST00000439724 ERICH3Q5RHP9 1530 aa18.65■□□□□ 0.58
SMAD3-202ENST00000439724 DNMBPQ6XZF7 1577 aa18.65■□□□□ 0.58
SMAD3-202ENST00000439724 TRIM26Q12899 539 aaPredicted RBP18.64■□□□□ 0.58
SMAD3-202ENST00000439724 UBTFP17480 764 aaKnown RBP18.64■□□□□ 0.57
SMAD3-202ENST00000439724 FGD5Q6ZNL6 1462 aa18.63■□□□□ 0.57
SMAD3-202ENST00000439724 PRXQ9BXM0 1461 aa18.62■□□□□ 0.57
SMAD3-202ENST00000439724 RAPGEF2Q9Y4G8 1499 aa18.62■□□□□ 0.57
SMAD3-202ENST00000439724 TOPBP1Q92547 1522 aa18.57■□□□□ 0.56
SMAD3-202ENST00000439724 PDS5BQ9NTI5 1447 aa18.55■□□□□ 0.56
SMAD3-202ENST00000439724 CUX2O14529 1486 aa18.54■□□□□ 0.56
SMAD3-202ENST00000439724 DNAJC5BQ9UF47 199 aa18.54■□□□□ 0.56
SMAD3-202ENST00000439724 CLIP1P30622 1438 aa18.5■□□□□ 0.55
SMAD3-202ENST00000439724 URB2Q14146 1524 aaKnown RBP18.5■□□□□ 0.55
SMAD3-202ENST00000439724 POLA1P09884 1462 aaPredicted RBP18.49■□□□□ 0.55
SMAD3-202ENST00000439724 ABCA10Q8WWZ4 1543 aa18.49■□□□□ 0.55
SMAD3-202ENST00000439724 KIF21AQ7Z4S6 1674 aa18.49■□□□□ 0.55
SMAD3-202ENST00000439724 IGF1RP08069 1367 aa18.45■□□□□ 0.54
SMAD3-202ENST00000439724 WDR97A6NE52 1622 aa18.44■□□□□ 0.54
SMAD3-202ENST00000439724 RAD54L2Q9Y4B4 1467 aa18.42■□□□□ 0.54
SMAD3-202ENST00000439724 HRCP23327 699 aa18.41■□□□□ 0.54
SMAD3-202ENST00000439724 VPS8Q8N3P4 1428 aa18.39■□□□□ 0.54
SMAD3-202ENST00000439724 CARMIL1Q5VZK9 1371 aa18.37■□□□□ 0.53
SMAD3-202ENST00000439724 CUL7Q14999 1698 aa18.35■□□□□ 0.53
SMAD3-202ENST00000439724 ABCA5Q8WWZ7 1642 aa18.33■□□□□ 0.53
SMAD3-202ENST00000439724 MRC2Q9UBG0 1479 aa18.32■□□□□ 0.52
SMAD3-202ENST00000439724 ARAP1Q96P48 1450 aa18.31■□□□□ 0.52
SMAD3-202ENST00000439724 PPARGC1BQ86YN6 1023 aaKnown RBP18.3■□□□□ 0.52
SMAD3-202ENST00000439724 TARBP1Q13395 1621 aaKnown RBP18.3■□□□□ 0.52
SMAD3-202ENST00000439724 ARHGAP35Q9NRY4 1499 aa18.24■□□□□ 0.51
SMAD3-202ENST00000439724 GAPVD1Q14C86 1478 aa18.23■□□□□ 0.51
SMAD3-202ENST00000439724 WDR62O43379 1518 aa18.23■□□□□ 0.51
SMAD3-202ENST00000439724 RANGAP1P46060 587 aaPredicted RBP18.2■□□□□ 0.5
SMAD3-202ENST00000439724 TDRD9Q8NDG6 1382 aaKnown RBP18.2■□□□□ 0.5
SMAD3-202ENST00000439724 CTTNBP2Q8WZ74 1663 aa18.19■□□□□ 0.5
SMAD3-202ENST00000439724 PBRM1Q86U86 1689 aa18.16■□□□□ 0.5
SMAD3-202ENST00000439724 APLP2Q06481 763 aa18.14■□□□□ 0.49
SMAD3-202ENST00000439724 IFT140Q96RY7 1462 aa18.13■□□□□ 0.49
SMAD3-202ENST00000439724 THOC2Q8NI27 1593 aaKnown RBP18.12■□□□□ 0.49
SMAD3-202ENST00000439724 EFCAB5A4FU69 1503 aa18.12■□□□□ 0.49
SMAD3-202ENST00000439724 TTBK1Q5TCY1 1321 aaPredicted RBP18.11■□□□□ 0.49
SMAD3-202ENST00000439724 ERCC6Q03468 1493 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms