RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 APLP2Q06481 763 aa39.56■■■■□ 3.92
CPNE1-216ENST00000437340 SNAPC4Q5SXM2 1469 aa39.55■■■■□ 3.92
CPNE1-216ENST00000437340 ARHGAP35Q9NRY4 1499 aa39.55■■■■□ 3.92
CPNE1-216ENST00000437340 FHAD1B1AJZ9 1412 aa39.53■■■■□ 3.92
CPNE1-216ENST00000437340 ZEB1P37275 1124 aaPredicted RBP39.47■■■■□ 3.91
CPNE1-216ENST00000437340 TTBK1Q5TCY1 1321 aaPredicted RBP39.46■■■■□ 3.91
CPNE1-216ENST00000437340 MAGI1Q96QZ7 1491 aaPredicted RBP39.45■■■■□ 3.91
CPNE1-216ENST00000437340 CTTNBP2Q8WZ74 1663 aa39.43■■■■□ 3.9
CPNE1-216ENST00000437340 SYNJ2O15056 1496 aa39.3■■■■□ 3.88
CPNE1-216ENST00000437340 GRIN2AQ12879 1464 aa39.27■■■■□ 3.88
CPNE1-216ENST00000437340 EFCAB5A4FU69 1503 aa39.21■■■■□ 3.87
CPNE1-216ENST00000437340 CHMP7Q8WUX9 453 aaPredicted RBP39.15■■■■□ 3.86
CPNE1-216ENST00000437340 MAP3K1Q13233 1512 aa39.13■■■■□ 3.85
CPNE1-216ENST00000437340 CHD1O14646 1710 aa39.12■■■■□ 3.85
CPNE1-216ENST00000437340 FBLN2P98095 1184 aa39.09■■■■□ 3.85
CPNE1-216ENST00000437340 CEP170Q5SW79 1584 aa39.09■■■■□ 3.85
CPNE1-216ENST00000437340 IQGAP2Q13576 1575 aa39.06■■■■□ 3.84
CPNE1-216ENST00000437340 KANK4Q5T7N3 995 aaPredicted RBP39.05■■■■□ 3.84
CPNE1-216ENST00000437340 NUP160Q12769 1436 aa38.99■■■■□ 3.83
CPNE1-216ENST00000437340 KIAA0586Q9BVV6 1533 aa38.98■■■■□ 3.83
CPNE1-216ENST00000437340 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP38.98■■■■□ 3.83
CPNE1-216ENST00000437340 TIAM1Q13009 1591 aa38.97■■■■□ 3.83
CPNE1-216ENST00000437340 SAMD9Q5K651 1589 aa38.95■■■■□ 3.83
CPNE1-216ENST00000437340 FHOD3Q2V2M9 1422 aa38.95■■■■□ 3.83
CPNE1-216ENST00000437340 CCER1Q8TC90 406 aaPredicted RBP38.94■■■■□ 3.82
CPNE1-216ENST00000437340 PCF11O94913 1555 aaKnown RBP38.9■■■■□ 3.82
CPNE1-216ENST00000437340 FYCO1Q9BQS8 1478 aa38.89■■■■□ 3.82
CPNE1-216ENST00000437340 P3H3Q8IVL6 736 aa38.88■■■■□ 3.81
CPNE1-216ENST00000437340 FMN1Q68DA7 1419 aa38.88■■■■□ 3.81
CPNE1-216ENST00000437340 CASKIN1Q8WXD9 1431 aa38.87■■■■□ 3.81
CPNE1-216ENST00000437340 RRBP1Q9P2E9 1410 aaKnown RBP38.86■■■■□ 3.81
CPNE1-216ENST00000437340 UGGT2Q9NYU1 1516 aa38.86■■■■□ 3.81
CPNE1-216ENST00000437340 CFAP43Q8NDM7 1665 aa38.83■■■■□ 3.81
CPNE1-216ENST00000437340 LRRC9Q6ZRR7 1453 aa38.81■■■■□ 3.8
CPNE1-216ENST00000437340 HNRNPUL2Q1KMD3 747 aaKnown RBP38.8■■■■□ 3.8
CPNE1-216ENST00000437340 KIAA0556O60303 1618 aa38.7■■■■□ 3.79
CPNE1-216ENST00000437340 DISP1Q96F81 1524 aa38.69■■■■□ 3.78
CPNE1-216ENST00000437340 CCNB3Q8WWL7 1395 aa38.67■■■■□ 3.78
CPNE1-216ENST00000437340 CLASP1Q7Z460 1538 aa38.6■■■■□ 3.77
CPNE1-216ENST00000437340 JPH4Q96JJ6 628 aa38.6■■■■□ 3.77
CPNE1-216ENST00000437340 ATP1B4Q9UN42 357 aaPredicted RBP38.58■■■■□ 3.77
CPNE1-216ENST00000437340 SHROOM2Q13796 1616 aa38.58■■■■□ 3.77
CPNE1-216ENST00000437340 PHLDB1Q86UU1 1377 aa38.49■■■■□ 3.75
CPNE1-216ENST00000437340 CARMIL2Q6F5E8 1435 aa38.48■■■■□ 3.75
CPNE1-216ENST00000437340 PRG4Q92954 1404 aaPredicted RBP38.44■■■■□ 3.74
CPNE1-216ENST00000437340 LRRIQ1Q96JM4 1722 aa38.4■■■■□ 3.74
CPNE1-216ENST00000437340 CCDC18Q5T9S5 1454 aa38.38■■■■□ 3.74
CPNE1-216ENST00000437340 HECW1Q76N89 1606 aa38.36■■■■□ 3.73
CPNE1-216ENST00000437340 MTUS2Q5JR59 1369 aa38.35■■■■□ 3.73
CPNE1-216ENST00000437340 ERCC6L2Q5T890 1561 aa38.34■■■■□ 3.73
CPNE1-216ENST00000437340 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP38.33■■■■□ 3.737e-10■■□□□ 13.2
CPNE1-216ENST00000437340 EHBP1L1Q8N3D4 1523 aa38.29■■■■□ 3.72
CPNE1-216ENST00000437340 RAPGEF6Q8TEU7 1601 aa38.27■■■■□ 3.72
CPNE1-216ENST00000437340 CLSPNQ9HAW4 1339 aa38.27■■■■□ 3.72
CPNE1-216ENST00000437340 OSCARQ8IYS5 282 aa38.26■■■■□ 3.72
CPNE1-216ENST00000437340 EPRSP07814 1512 aaKnown RBP38.21■■■■□ 3.71
CPNE1-216ENST00000437340 SUPT6HQ7KZ85 1726 aaKnown RBP38.19■■■■□ 3.7
CPNE1-216ENST00000437340 PLB1Q6P1J6 1458 aa38.19■■■■□ 3.7
CPNE1-216ENST00000437340 DHX57Q6P158 1386 aaKnown RBP38.18■■■■□ 3.7
CPNE1-216ENST00000437340 FGD6Q6ZV73 1430 aa38.18■■■■□ 3.7
CPNE1-216ENST00000437340 NCOA2Q15596 1464 aa38.17■■■■□ 3.7
CPNE1-216ENST00000437340 FAM50AQ14320 339 aaKnown RBP38.16■■■■□ 3.7
CPNE1-216ENST00000437340 ABCA8O94911 1581 aa38.15■■■■□ 3.7
CPNE1-216ENST00000437340 ITGAEP38570 1179 aa38.14■■■■□ 3.7
CPNE1-216ENST00000437340 NUP153P49790 1475 aaKnown RBP38.14■■■■□ 3.7
CPNE1-216ENST00000437340 PTPRGP23470 1445 aa38.13■■■■□ 3.69
CPNE1-216ENST00000437340 ARHGEF11O15085 1522 aa38.12■■■■□ 3.69
CPNE1-216ENST00000437340 MAGI3Q5TCQ9 1506 aa38.1■■■■□ 3.69
CPNE1-216ENST00000437340 MYOM3Q5VTT5 1437 aa38.1■■■■□ 3.69
CPNE1-216ENST00000437340 CDK13Q14004 1512 aaKnown RBP38.09■■■■□ 3.69
CPNE1-216ENST00000437340 SETD5Q9C0A6 1442 aa38.06■■■■□ 3.68
CPNE1-216ENST00000437340 RAB3GAP2Q9H2M9 1393 aa38.03■■■■□ 3.68
CPNE1-216ENST00000437340 ARID3CA6NKF2 412 aa38.01■■■■□ 3.67
CPNE1-216ENST00000437340 UACAQ9BZF9 1416 aa37.94■■■■□ 3.66
CPNE1-216ENST00000437340 PTPN23Q9H3S7 1636 aa37.88■■■■□ 3.65
CPNE1-216ENST00000437340 ABCC2Q92887 1545 aa37.88■■■■□ 3.65
CPNE1-216ENST00000437340 TCOF1Q13428 1488 aaKnown RBP37.88■■■■□ 3.65
CPNE1-216ENST00000437340 MIA2Q96PC5 1412 aa37.85■■■■□ 3.65
CPNE1-216ENST00000437340 CDK11AQ9UQ88 783 aaPredicted RBP37.85■■■■□ 3.65
CPNE1-216ENST00000437340 ATP10BO94823 1461 aa37.84■■■■□ 3.65
CPNE1-216ENST00000437340 UHRF1BP1LA0JNW5 1464 aa37.78■■■■□ 3.64
CPNE1-216ENST00000437340 HFM1A2PYH4 1435 aa37.76■■■■□ 3.64
CPNE1-216ENST00000437340 PTPRKQ15262 1439 aa37.75■■■■□ 3.63
CPNE1-216ENST00000437340 ADCY10Q96PN6 1610 aa37.73■■■■□ 3.63
CPNE1-216ENST00000437340 MAPKBP1O60336 1514 aa37.71■■■■□ 3.63
CPNE1-216ENST00000437340 TROQ12816 1431 aaPredicted RBP37.71■■■■□ 3.63
CPNE1-216ENST00000437340 ZNF316A6NFI3 1004 aaPredicted RBP37.7■■■■□ 3.63
CPNE1-216ENST00000437340 ZCCHC11Q5TAX3 1644 aaKnown RBP37.69■■■■□ 3.62
CPNE1-216ENST00000437340 RIMBP3CA6NJZ7 1639 aa37.64■■■■□ 3.62
CPNE1-216ENST00000437340 RIMBP3BA6NNM3 1639 aa37.64■■■■□ 3.62
CPNE1-216ENST00000437340 RIMBP3Q9UFD9 1639 aa37.64■■■■□ 3.62
CPNE1-216ENST00000437340 KDM5BQ9UGL1 1544 aa37.64■■■■□ 3.62
CPNE1-216ENST00000437340 KIF14Q15058 1648 aa37.63■■■■□ 3.61
CPNE1-216ENST00000437340 NAIPQ13075 1403 aa37.61■■■■□ 3.61
CPNE1-216ENST00000437340 AKNAQ7Z591 1439 aa37.6■■■■□ 3.61
CPNE1-216ENST00000437340 PLEKHD1A6NEE1 506 aa37.56■■■■□ 3.6
CPNE1-216ENST00000437340 DIEXFQ68CQ4 756 aaKnown RBP37.51■■■■□ 3.6
CPNE1-216ENST00000437340 ITSN2Q9NZM3 1697 aa37.48■■■■□ 3.59
CPNE1-216ENST00000437340 GCC2Q8IWJ2 1684 aa37.47■■■■□ 3.59
CPNE1-216ENST00000437340 GPATCH8Q9UKJ3 1502 aaKnown RBP37.43■■■■□ 3.58
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms