RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 UTP3Q9NQZ2 479 aaKnown RBP eCLIP27.65■■■□□ 2.021e-6■■■■■ 117.8
CPNE1-216ENST00000437340 XPO5Q9HAV4 1204 aaKnown RBP eCLIP29.03■■■□□ 2.249e-8■■■■■ 116.8
CPNE1-216ENST00000437340 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP27.46■■□□□ 1.993e-13■■■■■ 108.9
CPNE1-216ENST00000437340 SF3B1O75533 1304 aaKnown RBP eCLIP26.64■■□□□ 1.862e-6■■■■■ 85.9
CPNE1-216ENST00000437340 CSTF2P33240 577 aaKnown RBP eCLIP23.78■■□□□ 1.42e-45■■■■■ 66.1
CPNE1-216ENST00000437340 BUD13Q9BRD0 619 aaKnown RBP eCLIP27.59■■■□□ 2.014e-13■■■■■ 56.2
CPNE1-216ENST00000437340 WDR3Q9UNX4 943 aaKnown RBP eCLIP27.19■■□□□ 1.942e-6■■■■■ 55.4
CPNE1-216ENST00000437340 SF3B4Q15427 424 aaKnown RBP eCLIP22.35■■□□□ 1.171e-7■■■■■ 40
CPNE1-216ENST00000437340 ILF3Q12906 894 aaKnown RBP eCLIP24.4■■□□□ 1.57e-7■■■■■ 35.6
CPNE1-216ENST00000437340 TIAL1Q01085 375 aaKnown RBP eCLIP25.67■■□□□ 1.72e-6■■■■■ 33.5
CPNE1-216ENST00000437340 PCBP1Q15365 356 aaKnown RBP eCLIP27.35■■□□□ 1.973e-7■■■■■ 33.1
CPNE1-216ENST00000437340 PUM2Q8TB72 1066 aaKnown RBP eCLIP24.71■■□□□ 1.558e-8■■■■■ 32.7
CPNE1-216ENST00000437340 DDX24Q9GZR7 859 aaKnown RBP eCLIP30.61■■■□□ 2.493e-7■■■■■ 27.1
CPNE1-216ENST00000437340 AQRO60306 1485 aaKnown RBP eCLIP39.89■■■■□ 3.983e-7■■■■■ 27
CPNE1-216ENST00000437340 TBRG4Q969Z0 631 aaKnown RBP eCLIP25.58■■□□□ 1.692e-6■■■■■ 26.8
CPNE1-216ENST00000437340 EFTUD2Q15029 972 aaKnown RBP eCLIP26.48■■□□□ 1.836e-8■■■■□ 26.4
CPNE1-216ENST00000437340 RBFOX2O43251 390 aaKnown RBP eCLIP21.25■□□□□ 0.997e-8■■■■□ 26.3
CPNE1-216ENST00000437340 GPKOWQ92917 476 aaPredicted RBP eCLIP29.36■■■□□ 2.291e-7■■■■□ 26.1
CPNE1-216ENST00000437340 HNRNPMP52272 730 aaKnown RBP eCLIP36.81■■■■□ 3.481e-7■■■■□ 25.4
CPNE1-216ENST00000437340 DDX6P26196 483 aaKnown RBP eCLIP25.66■■□□□ 1.79e-13■■■■□ 25.3
CPNE1-216ENST00000437340 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP22.34■■□□□ 1.171e-7■■■■□ 24.8
CPNE1-216ENST00000437340 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP25.87■■□□□ 1.732e-16■■■■□ 24.6
CPNE1-216ENST00000437340 IGF2BP3O00425 579 aaKnown RBP eCLIP27.74■■■□□ 2.032e-7■■■■□ 22.5
CPNE1-216ENST00000437340 U2AF2P26368 475 aaKnown RBP eCLIP29.81■■■□□ 2.369e-27■■■■□ 22.3
CPNE1-216ENST00000437340 YBX3P16989 372 aaKnown RBP eCLIP29.05■■■□□ 2.242e-6■■■■□ 21.8
CPNE1-216ENST00000437340 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP23.09■■□□□ 1.295e-12■■■■□ 21.5
CPNE1-216ENST00000437340 SMNDC1O75940 238 aaKnown RBP eCLIP24.87■■□□□ 1.571e-15■■■■□ 21.1
CPNE1-216ENST00000437340 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP19.96■□□□□ 0.798e-8■■■■□ 20.3
CPNE1-216ENST00000437340 SAFBQ15424 915 aaKnown RBP eCLIP29.75■■■□□ 2.351e-17■■■■□ 20.2
CPNE1-216ENST00000437340 FMR1Q06787 632 aaKnown RBP eCLIP29.06■■■□□ 2.247e-7■■■□□ 18.6
CPNE1-216ENST00000437340 RPS3P23396 243 aaKnown RBP eCLIP25.52■■□□□ 1.684e-8■■■□□ 18.5
CPNE1-216ENST00000437340 FXR2P51116 673 aaKnown RBP eCLIP28.99■■■□□ 2.232e-6■■■□□ 18.4
CPNE1-216ENST00000437340 TIA1P31483 386 aaKnown RBP eCLIP24.76■■□□□ 1.551e-6■■■□□ 17.9
CPNE1-216ENST00000437340 BCCIPQ9P287 314 aaKnown RBP eCLIP26.89■■□□□ 1.95e-7■■■□□ 17.8
CPNE1-216ENST00000437340 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP25.41■■□□□ 1.664e-6■■■□□ 17.2
CPNE1-216ENST00000437340 HNRNPCP07910 306 aaKnown RBP eCLIP23.13■■□□□ 1.297e-7■■■□□ 17.1
CPNE1-216ENST00000437340 SF3A3Q12874 501 aaKnown RBP eCLIP26.21■■□□□ 1.793e-8■■■□□ 16.9
CPNE1-216ENST00000437340 KHSRPQ92945 711 aaKnown RBP eCLIP26.92■■□□□ 1.98e-8■■■□□ 15.7
CPNE1-216ENST00000437340 RBM5P52756 815 aaKnown RBP eCLIP29.28■■■□□ 2.282e-6■■■□□ 15.7
CPNE1-216ENST00000437340 DDX3XO00571 662 aaKnown RBP eCLIP27.86■■■□□ 2.051e-13■■■□□ 15.3
CPNE1-216ENST00000437340 QKIQ96PU8 341 aaKnown RBP eCLIP26.63■■□□□ 1.856e-7■■■□□ 15.2
CPNE1-216ENST00000437340 RBM15Q96T37 977 aaKnown RBP eCLIP26.82■■□□□ 1.882e-7■■■□□ 15.1
CPNE1-216ENST00000437340 PABPC4Q13310 644 aaKnown RBP eCLIP28.51■■■□□ 2.157e-7■■■□□ 14.8
CPNE1-216ENST00000437340 GTF2F1P35269 517 aaKnown RBP eCLIP28.7■■■□□ 2.196e-10■■■□□ 14.7
CPNE1-216ENST00000437340 HLTFQ14527 1009 aaKnown RBP eCLIP27.3■■□□□ 1.965e-8■■□□□ 14.2
CPNE1-216ENST00000437340 DDX59Q5T1V6 619 aaKnown RBP eCLIP24.52■■□□□ 1.522e-6■■□□□ 13.7
CPNE1-216ENST00000437340 EIF3HO15372 352 aaKnown RBP eCLIP26.87■■□□□ 1.898e-7■■□□□ 13.6
CPNE1-216ENST00000437340 PPIGQ13427 754 aaKnown RBP eCLIP26.04■■□□□ 1.765e-12■■□□□ 13.5
CPNE1-216ENST00000437340 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP38.33■■■■□ 3.737e-10■■□□□ 13.2
CPNE1-216ENST00000437340 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP37.31■■■■□ 3.561e-38■■□□□ 13.2
CPNE1-216ENST00000437340 ZRANB2O95218 330 aaKnown RBP eCLIP27.86■■■□□ 2.051e-6■■□□□ 12.9
CPNE1-216ENST00000437340 RBM22Q9NW64 420 aaKnown RBP eCLIP26.18■■□□□ 1.789e-7■■□□□ 12.8
CPNE1-216ENST00000437340 U2AF1Q01081 240 aaKnown RBP eCLIP33.68■■■□□ 2.986e-11■■□□□ 12.7
CPNE1-216ENST00000437340 FUSP35637 526 aaKnown RBP eCLIP15.97■□□□□ 0.151e-10■■□□□ 12.2
CPNE1-216ENST00000437340 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP32.19■■■□□ 2.741e-6■■□□□ 12.2
CPNE1-216ENST00000437340 ZNF622Q969S3 477 aaKnown RBP eCLIP29.8■■■□□ 2.364e-6■■□□□ 12.1
CPNE1-216ENST00000437340 LIN28BQ6ZN17 250 aaKnown RBP eCLIP26.2■■□□□ 1.791e-8■■□□□ 11.7
CPNE1-216ENST00000437340 PABPN1Q86U42 306 aaKnown RBP eCLIP44.61■■■■■ 4.731e-6■■□□□ 11.6
CPNE1-216ENST00000437340 PRPF4O43172 522 aaKnown RBP eCLIP26.51■■□□□ 1.832e-8■□□□□ 11.3
CPNE1-216ENST00000437340 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP28.7■■■□□ 2.198e-7■□□□□ 11.3
CPNE1-216ENST00000437340 SLTMQ9NWH9 1034 aaKnown RBP eCLIP27.38■■□□□ 1.972e-10■□□□□ 11.3
CPNE1-216ENST00000437340 SFPQP23246 707 aaKnown RBP eCLIP28.94■■■□□ 2.228e-7■□□□□ 11.1
CPNE1-216ENST00000437340 G3BP1Q13283 466 aaKnown RBP eCLIP31.42■■■□□ 2.622e-8■□□□□ 11.1
CPNE1-216ENST00000437340 SDAD1Q9NVU7 687 aaKnown RBP eCLIP25.72■■□□□ 1.718e-7■□□□□ 11.1
CPNE1-216ENST00000437340 PCBP2Q15366 365 aaKnown RBP eCLIP25.37■■□□□ 1.651e-7■□□□□ 10.9
CPNE1-216ENST00000437340 GRSF1Q12849 480 aaKnown RBP eCLIP24.67■■□□□ 1.543e-10■□□□□ 10.9
CPNE1-216ENST00000437340 DDX55Q8NHQ9 600 aaKnown RBP eCLIP28.39■■■□□ 2.144e-6■□□□□ 10.7
CPNE1-216ENST00000437340 GRWD1Q9BQ67 446 aaKnown RBP eCLIP36.1■■■■□ 3.379e-9■□□□□ 10.7
CPNE1-216ENST00000437340 NIPBLQ6KC79 2804 aaeCLIP18.83■□□□□ 0.611e-8■□□□□ 10.5
CPNE1-216ENST00000437340 XRN2Q9H0D6 950 aaKnown RBP eCLIP26.85■■□□□ 1.896e-9■□□□□ 10.4
CPNE1-216ENST00000437340 HNRNPLP14866 589 aaKnown RBP eCLIP25.58■■□□□ 1.692e-8■□□□□ 10.1
CPNE1-216ENST00000437340 NCBP2P52298 156 aaKnown RBP eCLIP24.31■■□□□ 1.489e-8■□□□□ 9.8
CPNE1-216ENST00000437340 SRSF7Q16629 238 aaKnown RBP eCLIP21.99■■□□□ 1.111e-7■□□□□ 9.8
CPNE1-216ENST00000437340 TAF15Q92804 592 aaKnown RBP eCLIP21.05■□□□□ 0.961e-6■□□□□ 9.7
CPNE1-216ENST00000437340 FTOQ9C0B1 505 aaKnown RBP eCLIP29.85■■■□□ 2.375e-10■□□□□ 9.7
CPNE1-216ENST00000437340 DHX30Q7L2E3 1194 aaKnown RBP eCLIP28.04■■■□□ 2.083e-8■□□□□ 9.3
CPNE1-216ENST00000437340 SRSF1Q07955 248 aaKnown RBP eCLIP20.77■□□□□ 0.923e-6■□□□□ 9.1
CPNE1-216ENST00000437340 SAFB2Q14151 953 aaKnown RBP eCLIP34.26■■■■□ 3.073e-13■□□□□ 9.1
CPNE1-216ENST00000437340 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP29.38■■■□□ 2.292e-10■□□□□ 8.4
CPNE1-216ENST00000437340 NOLC1Q14978 699 aaKnown RBP eCLIP29.14■■■□□ 2.263e-8■□□□□ 8.2
Retrieved 80 of 80 RNA–protein pairs in 18.6 ms