RNA–Protein interactions for RNA: ENST00000434667.3

SCAF4-203, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 3,846 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-203ENST00000434667 RRBP1Q9P2E9 1410 aaKnown RBP15.15■□□□□ 0.02
SCAF4-203ENST00000434667 DHX57Q6P158 1386 aaKnown RBP15.15■□□□□ 0.02
SCAF4-203ENST00000434667 FKBP8Q14318 412 aa15.15■□□□□ 0.02
SCAF4-203ENST00000434667 SAMD9Q5K651 1589 aa15.14■□□□□ 0.01
SCAF4-203ENST00000434667 ABCA10Q8WWZ4 1543 aa15.13■□□□□ 0.01
SCAF4-203ENST00000434667 ANP32EQ9BTT0 268 aa15.12■□□□□ 0.01
SCAF4-203ENST00000434667 KIF21AQ7Z4S6 1674 aa15.11■□□□□ 0.01
SCAF4-203ENST00000434667 LAMC3Q9Y6N6 1575 aa15.11■□□□□ 0.01
SCAF4-203ENST00000434667 DDX10Q13206 875 aaKnown RBP15.11■□□□□ 0.01
SCAF4-203ENST00000434667 TRIM52Q96A61 297 aa15.09■□□□□ 0.01
SCAF4-203ENST00000434667 TIAM1Q13009 1591 aa15.09■□□□□ 0.01
SCAF4-203ENST00000434667 TARBP1Q13395 1621 aaKnown RBP15.09■□□□□ 0.01
SCAF4-203ENST00000434667 BCL11AQ9H165 835 aa15.08■□□□□ 0
SCAF4-203ENST00000434667 CNGB1Q14028 1251 aaPredicted RBP15.07■□□□□ 0
SCAF4-203ENST00000434667 CADPSQ9ULU8 1353 aa15.07■□□□□ 0
SCAF4-203ENST00000434667 FGD5Q6ZNL6 1462 aa15.06■□□□□ 0
SCAF4-203ENST00000434667 SIN3AQ96ST3 1273 aa15.05■□□□□ -0
SCAF4-203ENST00000434667 KIF27Q86VH2 1401 aa15.03■□□□□ -0
SCAF4-203ENST00000434667 IGF1RP08069 1367 aa15.02■□□□□ -0
SCAF4-203ENST00000434667 AQRO60306 1485 aaKnown RBP eCLIP15.01□□□□□ -0.015e-7■■■□□ 18.5
SCAF4-203ENST00000434667 TOPBP1Q92547 1522 aa15.01□□□□□ -0.01
SCAF4-203ENST00000434667 IRX6P78412 446 aaPredicted RBP15.01□□□□□ -0.01
SCAF4-203ENST00000434667 PCF11O94913 1555 aaKnown RBP15□□□□□ -0.01
SCAF4-203ENST00000434667 EFCAB5A4FU69 1503 aa15□□□□□ -0.01
SCAF4-203ENST00000434667 ARHGEF11O15085 1522 aa14.98□□□□□ -0.01
SCAF4-203ENST00000434667 SNAPC4Q5SXM2 1469 aa14.98□□□□□ -0.01
SCAF4-203ENST00000434667 NEFLP07196 543 aa14.98□□□□□ -0.01
SCAF4-203ENST00000434667 POLA1P09884 1462 aaPredicted RBP14.98□□□□□ -0.01
SCAF4-203ENST00000434667 PBRM1Q86U86 1689 aa14.97□□□□□ -0.01
SCAF4-203ENST00000434667 URB2Q14146 1524 aaKnown RBP14.97□□□□□ -0.01
SCAF4-203ENST00000434667 THOC2Q8NI27 1593 aaKnown RBP14.96□□□□□ -0.01
SCAF4-203ENST00000434667 ATP1B4Q9UN42 357 aaPredicted RBP14.96□□□□□ -0.01
SCAF4-203ENST00000434667 RBM19Q9Y4C8 960 aaKnown RBP14.96□□□□□ -0.02
SCAF4-203ENST00000434667 MAPKBP1O60336 1514 aa14.95□□□□□ -0.02
SCAF4-203ENST00000434667 FANCD2Q9BXW9 1451 aa14.95□□□□□ -0.02
SCAF4-203ENST00000434667 FAM50AQ14320 339 aaKnown RBP14.9□□□□□ -0.02
SCAF4-203ENST00000434667 P3H3Q8IVL6 736 aa14.9□□□□□ -0.02
SCAF4-203ENST00000434667 MSH5O43196 834 aa14.88□□□□□ -0.03
SCAF4-203ENST00000434667 FYCO1Q9BQS8 1478 aa14.87□□□□□ -0.03
SCAF4-203ENST00000434667 RAB3GAP2Q9H2M9 1393 aa14.87□□□□□ -0.03
SCAF4-203ENST00000434667 LRRC9Q6ZRR7 1453 aa14.86□□□□□ -0.03
SCAF4-203ENST00000434667 CLSPNQ9HAW4 1339 aa14.84□□□□□ -0.03
SCAF4-203ENST00000434667 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.84□□□□□ -0.035e-6■■■■■ 46.2
SCAF4-203ENST00000434667 NESP48681 1621 aa14.84□□□□□ -0.03
SCAF4-203ENST00000434667 CCNB3Q8WWL7 1395 aa14.84□□□□□ -0.03
SCAF4-203ENST00000434667 KDM5BQ9UGL1 1544 aa14.83□□□□□ -0.04
SCAF4-203ENST00000434667 GRIN2BQ13224 1484 aa14.82□□□□□ -0.04
SCAF4-203ENST00000434667 ADAMTS12P58397 1594 aa14.82□□□□□ -0.04
SCAF4-203ENST00000434667 SENP3-EIF4A1A0A087X0R7 540 aa14.8□□□□□ -0.04
SCAF4-203ENST00000434667 GCC2Q8IWJ2 1684 aa14.8□□□□□ -0.04
SCAF4-203ENST00000434667 CASKIN1Q8WXD9 1431 aa14.78□□□□□ -0.04
SCAF4-203ENST00000434667 PPP1R15AO75807 674 aaPredicted RBP14.77□□□□□ -0.04
SCAF4-203ENST00000434667 RAD54L2Q9Y4B4 1467 aa14.77□□□□□ -0.04
SCAF4-203ENST00000434667 MAGI3Q5TCQ9 1506 aa14.76□□□□□ -0.05
SCAF4-203ENST00000434667 WDR62O43379 1518 aa14.76□□□□□ -0.05
SCAF4-203ENST00000434667 ANP32CO43423 234 aa14.75□□□□□ -0.05
SCAF4-203ENST00000434667 HNRNPUQ00839 825 aaKnown RBP eCLIP14.73□□□□□ -0.05
SCAF4-203ENST00000434667 CARMIL1Q5VZK9 1371 aa14.73□□□□□ -0.05
SCAF4-203ENST00000434667 UGGT2Q9NYU1 1516 aa14.71□□□□□ -0.06
SCAF4-203ENST00000434667 TCOF1Q13428 1488 aaKnown RBP14.7□□□□□ -0.06
SCAF4-203ENST00000434667 DENND4BO75064 1496 aaPredicted RBP14.69□□□□□ -0.06
SCAF4-203ENST00000434667 PHLDB1Q86UU1 1377 aa14.69□□□□□ -0.06
SCAF4-203ENST00000434667 POLR3GLQ9BT43 218 aa14.68□□□□□ -0.06
SCAF4-203ENST00000434667 ADCY10Q96PN6 1610 aa14.67□□□□□ -0.06
SCAF4-203ENST00000434667 HECW1Q76N89 1606 aa14.67□□□□□ -0.06
SCAF4-203ENST00000434667 CCDC184Q52MB2 194 aa14.66□□□□□ -0.06
SCAF4-203ENST00000434667 DNAJC5BQ9UF47 199 aa14.66□□□□□ -0.06
SCAF4-203ENST00000434667 SETD5Q9C0A6 1442 aa14.66□□□□□ -0.06
SCAF4-203ENST00000434667 FHAD1B1AJZ9 1412 aa14.65□□□□□ -0.06
SCAF4-203ENST00000434667 PTPN23Q9H3S7 1636 aa14.65□□□□□ -0.06
SCAF4-203ENST00000434667 SUPT6HQ7KZ85 1726 aaKnown RBP14.64□□□□□ -0.07
SCAF4-203ENST00000434667 CROCC2H7BZ55 1655 aa14.63□□□□□ -0.07
SCAF4-203ENST00000434667 POLR1AO95602 1720 aaPredicted RBP14.63□□□□□ -0.07
SCAF4-203ENST00000434667 B4GALNT3Q6L9W6 998 aa14.63□□□□□ -0.07
SCAF4-203ENST00000434667 EHBP1L1Q8N3D4 1523 aa14.62□□□□□ -0.07
SCAF4-203ENST00000434667 NBR1Q14596 966 aa14.61□□□□□ -0.07
SCAF4-203ENST00000434667 FAM9BQ8IZU0 186 aa14.6□□□□□ -0.07
SCAF4-203ENST00000434667 CDK11AQ9UQ88 783 aaPredicted RBP14.59□□□□□ -0.07
SCAF4-203ENST00000434667 GAPVD1Q14C86 1478 aa14.59□□□□□ -0.07
SCAF4-203ENST00000434667 IQGAP2Q13576 1575 aa14.59□□□□□ -0.07
SCAF4-203ENST00000434667 AKNAQ7Z591 1439 aa14.58□□□□□ -0.08
SCAF4-203ENST00000434667 PTPRKQ15262 1439 aa14.57□□□□□ -0.08
SCAF4-203ENST00000434667 KIAA0556O60303 1618 aa14.57□□□□□ -0.08
SCAF4-203ENST00000434667 EIF4G3O43432 1585 aaKnown RBP14.56□□□□□ -0.08
SCAF4-203ENST00000434667 CCER2I3L3R5 266 aa14.56□□□□□ -0.08
SCAF4-203ENST00000434667 TONSLQ96HA7 1378 aa14.56□□□□□ -0.08
SCAF4-203ENST00000434667 KDM6BO15054 1643 aa14.55□□□□□ -0.08
SCAF4-203ENST00000434667 CHIC2Q9UKJ5 165 aa14.55□□□□□ -0.08
SCAF4-203ENST00000434667 DISP1Q96F81 1524 aa14.54□□□□□ -0.08
SCAF4-203ENST00000434667 FHOD3Q2V2M9 1422 aa14.53□□□□□ -0.08
SCAF4-203ENST00000434667 FOXD1Q16676 465 aa14.53□□□□□ -0.08
SCAF4-203ENST00000434667 MRC2Q9UBG0 1479 aa14.53□□□□□ -0.08
SCAF4-203ENST00000434667 ARID3CA6NKF2 412 aa14.52□□□□□ -0.08
SCAF4-203ENST00000434667 HFM1A2PYH4 1435 aa14.52□□□□□ -0.09
SCAF4-203ENST00000434667 FMN1Q68DA7 1419 aa14.52□□□□□ -0.09
SCAF4-203ENST00000434667 FGD6Q6ZV73 1430 aa14.51□□□□□ -0.09
SCAF4-203ENST00000434667 PDS5BQ9NTI5 1447 aa14.51□□□□□ -0.09
SCAF4-203ENST00000434667 CCDC18Q5T9S5 1454 aa14.5□□□□□ -0.09
SCAF4-203ENST00000434667 PAK3O75914 559 aaPredicted RBP14.5□□□□□ -0.09
SCAF4-203ENST00000434667 DNMT1P26358 1616 aaKnown RBP14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms