RNA–Protein interactions for RNA: ENST00000434667.3

SCAF4-203, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 3,846 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-203ENST00000434667 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.9□□□□□ -0.821e-323■■■■■ 61.3
SCAF4-203ENST00000434667 DDX3XO00571 662 aaKnown RBP eCLIP11.36□□□□□ -0.594e-24■■■□□ 15.6
SCAF4-203ENST00000434667 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.96□□□□□ -0.181e-23■■■■□ 23.1
SCAF4-203ENST00000434667 U2AF1Q01081 240 aaKnown RBP eCLIP13.23□□□□□ -0.299e-23■■■■□ 19.4
SCAF4-203ENST00000434667 CSTF2P33240 577 aaKnown RBP eCLIP9.93□□□□□ -0.826e-21■■■■■ 32.8
SCAF4-203ENST00000434667 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.37□□□□□ -0.592e-15■■□□□ 11.9
SCAF4-203ENST00000434667 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.89□□□□□ -0.838e-15■■■■■ 32
SCAF4-203ENST00000434667 TRA2AQ13595 282 aaKnown RBP eCLIP8.84□□□□□ -0.991e-13■■■■□ 23.2
SCAF4-203ENST00000434667 RBM15Q96T37 977 aaKnown RBP eCLIP11.11□□□□□ -0.633e-12■■■■□ 25
SCAF4-203ENST00000434667 PCBP2Q15366 365 aaKnown RBP eCLIP10.08□□□□□ -0.85e-12■■■□□ 19.2
SCAF4-203ENST00000434667 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.29□□□□□ -0.767e-11■■■□□ 19.1
SCAF4-203ENST00000434667 PABPC4Q13310 644 aaKnown RBP eCLIP11.38□□□□□ -0.598e-11■■■■■ 41.8
SCAF4-203ENST00000434667 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.92□□□□□ -0.663e-10■■■■□ 22.1
SCAF4-203ENST00000434667 DDX6P26196 483 aaKnown RBP eCLIP9.52□□□□□ -0.882e-9■■■■■ 40
SCAF4-203ENST00000434667 CPSF6Q16630 551 aaKnown RBP eCLIP10.22□□□□□ -0.772e-9■■■■■ 44.3
SCAF4-203ENST00000434667 NONOQ15233 471 aaKnown RBP eCLIP11.44□□□□□ -0.582e-9■□□□□ 10
SCAF4-203ENST00000434667 PUM1Q14671 1186 aaKnown RBP eCLIP9.97□□□□□ -0.813e-9■■■■□ 21.1
SCAF4-203ENST00000434667 LARP4Q71RC2 724 aaKnown RBP eCLIP10.44□□□□□ -0.743e-9■■□□□ 13.6
SCAF4-203ENST00000434667 ZNF622Q969S3 477 aaKnown RBP eCLIP11.18□□□□□ -0.623e-9■■□□□ 12.5
SCAF4-203ENST00000434667 U2AF2P26368 475 aaKnown RBP eCLIP12.65□□□□□ -0.383e-9■■■□□ 16.3
SCAF4-203ENST00000434667 HNRNPLP14866 589 aaKnown RBP eCLIP10.67□□□□□ -0.74e-9■□□□□ 11.3
SCAF4-203ENST00000434667 PPIGQ13427 754 aaKnown RBP eCLIP10.07□□□□□ -0.88e-9■■□□□ 13.7
SCAF4-203ENST00000434667 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.77□□□□□ -0.219e-9■■□□□ 12.6
SCAF4-203ENST00000434667 WRNQ14191 1432 aaPredicted RBP eCLIP15.94■□□□□ 0.141e-8■■■■■ 41.8
SCAF4-203ENST00000434667 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.81□□□□□ -0.844e-8■■■■□ 24.8
SCAF4-203ENST00000434667 NIPBLQ6KC79 2804 aaeCLIP7.84□□□□□ -1.156e-8■■■■■ 30.6
SCAF4-203ENST00000434667 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.34□□□□□ -0.756e-8■□□□□ 9.9
SCAF4-203ENST00000434667 KHSRPQ92945 711 aaKnown RBP eCLIP10.65□□□□□ -0.79e-8■■■■□ 23.9
SCAF4-203ENST00000434667 SF3A3Q12874 501 aaKnown RBP eCLIP11.92□□□□□ -0.51e-7■■■□□ 16.1
SCAF4-203ENST00000434667 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.77□□□□□ -0.531e-7■■□□□ 12.7
SCAF4-203ENST00000434667 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.06□□□□□ -0.962e-7■■■□□ 16.8
SCAF4-203ENST00000434667 NOLC1Q14978 699 aaKnown RBP eCLIP12.67□□□□□ -0.382e-7■■□□□ 13.6
SCAF4-203ENST00000434667 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.16□□□□□ -0.462e-7■■□□□ 11.4
SCAF4-203ENST00000434667 NCBP2P52298 156 aaKnown RBP eCLIP9.77□□□□□ -0.855e-7■■■□□ 17
SCAF4-203ENST00000434667 RBFOX2O43251 390 aaKnown RBP eCLIP8.83□□□□□ -15e-7■■□□□ 14.3
SCAF4-203ENST00000434667 EFTUD2Q15029 972 aaKnown RBP eCLIP11.15□□□□□ -0.625e-7■■■■■ 28.8
SCAF4-203ENST00000434667 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.19□□□□□ -0.625e-7■■■□□ 16
SCAF4-203ENST00000434667 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.76□□□□□ -0.535e-7■■□□□ 12.8
SCAF4-203ENST00000434667 AQRO60306 1485 aaKnown RBP eCLIP15.01□□□□□ -0.015e-7■■■□□ 18.5
SCAF4-203ENST00000434667 QKIQ96PU8 341 aaKnown RBP eCLIP10.6□□□□□ -0.716e-7■■■■□ 23
SCAF4-203ENST00000434667 SF3B4Q15427 424 aaKnown RBP eCLIP10.43□□□□□ -0.747e-7■■□□□ 12.3
SCAF4-203ENST00000434667 YBX3P16989 372 aaKnown RBP eCLIP10.47□□□□□ -0.738e-7■■■□□ 14.9
SCAF4-203ENST00000434667 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.49□□□□□ -0.578e-7■■■■■ 56.9
SCAF4-203ENST00000434667 FMR1Q06787 632 aaKnown RBP eCLIP12.05□□□□□ -0.488e-7■■■■■ 28.2
SCAF4-203ENST00000434667 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.84□□□□□ -0.679e-7■■■□□ 16.3
SCAF4-203ENST00000434667 TIA1P31483 386 aaKnown RBP eCLIP9.9□□□□□ -0.831e-6■■■□□ 18.1
SCAF4-203ENST00000434667 ZRANB2O95218 330 aaKnown RBP eCLIP12.08□□□□□ -0.481e-6■■■■□ 23.3
SCAF4-203ENST00000434667 SF3B1O75533 1304 aaKnown RBP eCLIP10.76□□□□□ -0.691e-6■■■■■ 57.5
SCAF4-203ENST00000434667 RBM22Q9NW64 420 aaKnown RBP eCLIP10.42□□□□□ -0.741e-6■■■■■ 34.8
SCAF4-203ENST00000434667 TIAL1Q01085 375 aaKnown RBP eCLIP10.36□□□□□ -0.752e-6■■■■□ 22
SCAF4-203ENST00000434667 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.3□□□□□ -0.762e-6■■■■■ 54.9
SCAF4-203ENST00000434667 GPKOWQ92917 476 aaPredicted RBP eCLIP11.73□□□□□ -0.532e-6■■■□□ 16.4
SCAF4-203ENST00000434667 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.8□□□□□ -0.362e-6■■□□□ 14.1
SCAF4-203ENST00000434667 G3BP1Q13283 466 aaKnown RBP eCLIP12.25□□□□□ -0.452e-6■□□□□ 9.7
SCAF4-203ENST00000434667 LSM11P83369 360 aaKnown RBP eCLIP10.08□□□□□ -0.82e-6■■■□□ 15.4
SCAF4-203ENST00000434667 TARDBPQ13148 414 aaKnown RBP eCLIP9.96□□□□□ -0.823e-6■□□□□ 9.1
SCAF4-203ENST00000434667 AATFQ9NY61 560 aaKnown RBP eCLIP11.71□□□□□ -0.544e-6■□□□□ 10.1
SCAF4-203ENST00000434667 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.84□□□□□ -0.035e-6■■■■■ 46.2
SCAF4-203ENST00000434667 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.03□□□□□ -0.645e-6■■■■■ 29.2
SCAF4-203ENST00000434667 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.77□□□□□ -0.856e-6■■■□□ 19.1
SCAF4-203ENST00000434667 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.09□□□□□ -0.637e-6■■■□□ 16.5
SCAF4-203ENST00000434667 PTBP1P26599 531 aaKnown RBP eCLIP9.62□□□□□ -0.877e-6■□□□□ 8.1
SCAF4-203ENST00000434667 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.58□□□□□ -0.729e-6■■■■□ 26.1
Retrieved 63 of 63 RNA–protein pairs in 13.2 ms