RNA–Protein interactions for RNA: ENST00000434667.3

SCAF4-203, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 3,846 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-203ENST00000434667 NISCHQ9Y2I1 1504 aa21.56■■□□□ 1.04
SCAF4-203ENST00000434667 CCDC180Q9P1Z9 1646 aa18.85■□□□□ 0.61
SCAF4-203ENST00000434667 ZCCHC6Q5VYS8 1495 aaKnown RBP18.4■□□□□ 0.54
SCAF4-203ENST00000434667 SHROOM4Q9ULL8 1493 aa18.22■□□□□ 0.51
SCAF4-203ENST00000434667 DCAF1Q9Y4B6 1507 aa18.15■□□□□ 0.5
SCAF4-203ENST00000434667 SUPT5HO00267 1087 aaKnown RBP18.05■□□□□ 0.48
SCAF4-203ENST00000434667 MYO15BQ96JP2 1530 aa17.72■□□□□ 0.43
SCAF4-203ENST00000434667 PPARGC1BQ86YN6 1023 aaKnown RBP17.69■□□□□ 0.42
SCAF4-203ENST00000434667 PCGF6Q9BYE7 350 aa17.63■□□□□ 0.41
SCAF4-203ENST00000434667 HRCP23327 699 aa17.6■□□□□ 0.41
SCAF4-203ENST00000434667 ABCC9O60706 1549 aa17.42■□□□□ 0.38
SCAF4-203ENST00000434667 CHIC1Q5VXU3 224 aa17.41■□□□□ 0.38
SCAF4-203ENST00000434667 DCAF8L2P0C7V8 631 aa17.4■□□□□ 0.38
SCAF4-203ENST00000434667 LOC105371045A0A1W2PR82 267 aa17.28■□□□□ 0.36
SCAF4-203ENST00000434667 NACADO15069 1562 aa17.07■□□□□ 0.32
SCAF4-203ENST00000434667 EIF4G1Q04637 1599 aaKnown RBP17.04■□□□□ 0.32
SCAF4-203ENST00000434667 EHMT2Q96KQ7 1210 aa17.01■□□□□ 0.31
SCAF4-203ENST00000434667 UNC13AQ9UPW8 1703 aa17■□□□□ 0.31
SCAF4-203ENST00000434667 SCRIBQ14160 1630 aa16.91■□□□□ 0.3
SCAF4-203ENST00000434667 RB1CC1Q8TDY2 1594 aa16.86■□□□□ 0.29
SCAF4-203ENST00000434667 RSF1Q96T23 1441 aaPredicted RBP16.85■□□□□ 0.29
SCAF4-203ENST00000434667 FAM9AQ8IZU1 332 aaPredicted RBP16.81■□□□□ 0.28
SCAF4-203ENST00000434667 TRIM26Q12899 539 aaPredicted RBP16.78■□□□□ 0.28
SCAF4-203ENST00000434667 BAZ1AQ9NRL2 1556 aaPredicted RBP16.74■□□□□ 0.27
SCAF4-203ENST00000434667 SCAF1Q9H7N4 1312 aaKnown RBP16.72■□□□□ 0.27
SCAF4-203ENST00000434667 MROH2BQ7Z745 1585 aa16.65■□□□□ 0.26
SCAF4-203ENST00000434667 WIZO95785 1651 aa16.62■□□□□ 0.25
SCAF4-203ENST00000434667 PEG3Q9GZU2 1588 aa16.61■□□□□ 0.25
SCAF4-203ENST00000434667 CECR2Q9BXF3 1484 aa16.58■□□□□ 0.24
SCAF4-203ENST00000434667 BICRAQ9NZM4 1560 aa16.58■□□□□ 0.24
SCAF4-203ENST00000434667 SMARCA4P51532 1647 aa16.53■□□□□ 0.24
SCAF4-203ENST00000434667 TTBK1Q5TCY1 1321 aaPredicted RBP16.5■□□□□ 0.23
SCAF4-203ENST00000434667 TRIM41Q8WV44 630 aa16.48■□□□□ 0.23
SCAF4-203ENST00000434667 TOP2AP11388 1531 aaKnown RBP16.46■□□□□ 0.23
SCAF4-203ENST00000434667 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.44■□□□□ 0.22
SCAF4-203ENST00000434667 SMARCA2P51531 1590 aa16.4■□□□□ 0.22
SCAF4-203ENST00000434667 ZEB1P37275 1124 aaPredicted RBP16.37■□□□□ 0.21
SCAF4-203ENST00000434667 NEUROD1Q13562 356 aa16.36■□□□□ 0.21
SCAF4-203ENST00000434667 PELP1Q8IZL8 1130 aaKnown RBP16.32■□□□□ 0.2
SCAF4-203ENST00000434667 CCER1Q8TC90 406 aaPredicted RBP16.26■□□□□ 0.19
SCAF4-203ENST00000434667 GTF3C3Q9Y5Q9 886 aa16.24■□□□□ 0.19
SCAF4-203ENST00000434667 ACIN1Q9UKV3 1341 aaKnown RBP16.22■□□□□ 0.19
SCAF4-203ENST00000434667 YTHDC1Q96MU7 727 aaKnown RBP16.16■□□□□ 0.18
SCAF4-203ENST00000434667 CCDC88BA6NC98 1476 aa16.13■□□□□ 0.17
SCAF4-203ENST00000434667 DIEXFQ68CQ4 756 aaKnown RBP16.12■□□□□ 0.17
SCAF4-203ENST00000434667 PRDM2Q13029 1718 aa16.04■□□□□ 0.16
SCAF4-203ENST00000434667 BIVM-ERCC5R4GMW8 1640 aa16■□□□□ 0.15
SCAF4-203ENST00000434667 ABCC8Q09428 1581 aa15.97■□□□□ 0.15
SCAF4-203ENST00000434667 WRNQ14191 1432 aaPredicted RBP eCLIP15.94■□□□□ 0.141e-8■■■■■ 41.8
SCAF4-203ENST00000434667 CENPBP07199 599 aaPredicted RBP15.94■□□□□ 0.14
SCAF4-203ENST00000434667 SYNJ1O43426 1573 aa15.93■□□□□ 0.14
SCAF4-203ENST00000434667 KIF21BO75037 1637 aa15.93■□□□□ 0.14
SCAF4-203ENST00000434667 HMGXB3Q12766 1538 aa15.92■□□□□ 0.14
SCAF4-203ENST00000434667 ATAD2BQ9ULI0 1458 aa15.9■□□□□ 0.14
SCAF4-203ENST00000434667 TOP2BQ02880 1626 aa15.85■□□□□ 0.13
SCAF4-203ENST00000434667 MIER1Q8N108 512 aa15.83■□□□□ 0.12
SCAF4-203ENST00000434667 HNRNPUL2Q1KMD3 747 aaKnown RBP15.82■□□□□ 0.12
SCAF4-203ENST00000434667 RANGAP1P46060 587 aaPredicted RBP15.8■□□□□ 0.12
SCAF4-203ENST00000434667 EEA1Q15075 1411 aa15.77■□□□□ 0.12
SCAF4-203ENST00000434667 ZNF316A6NFI3 1004 aaPredicted RBP15.76■□□□□ 0.11
SCAF4-203ENST00000434667 UBTFP17480 764 aaKnown RBP15.75■□□□□ 0.11
SCAF4-203ENST00000434667 RUSC2Q8N2Y8 1516 aa15.71■□□□□ 0.11
SCAF4-203ENST00000434667 NCAPD3P42695 1498 aa15.71■□□□□ 0.11
SCAF4-203ENST00000434667 SOGA1O94964 1423 aa15.68■□□□□ 0.1
SCAF4-203ENST00000434667 BAZ1BQ9UIG0 1483 aaKnown RBP15.65■□□□□ 0.1
SCAF4-203ENST00000434667 TNIKQ9UKE5 1360 aa15.64■□□□□ 0.09
SCAF4-203ENST00000434667 CEP162Q5TB80 1403 aa15.63■□□□□ 0.09
SCAF4-203ENST00000434667 ERICH3Q5RHP9 1530 aa15.63■□□□□ 0.09
SCAF4-203ENST00000434667 CUX1P39880 1505 aa15.56■□□□□ 0.08
SCAF4-203ENST00000434667 CFTRP13569 1480 aa15.55■□□□□ 0.08
SCAF4-203ENST00000434667 PRXQ9BXM0 1461 aa15.54■□□□□ 0.08
SCAF4-203ENST00000434667 WDR97A6NE52 1622 aa15.53■□□□□ 0.08
SCAF4-203ENST00000434667 GOLGA3Q08378 1498 aa15.53■□□□□ 0.08
SCAF4-203ENST00000434667 CSRNP3Q8WYN3 585 aa15.5■□□□□ 0.07
SCAF4-203ENST00000434667 CEP164Q9UPV0 1460 aa15.48■□□□□ 0.07
SCAF4-203ENST00000434667 MYT1Q01538 1121 aa15.46■□□□□ 0.06
SCAF4-203ENST00000434667 BCANQ96GW7 911 aa15.44■□□□□ 0.06
SCAF4-203ENST00000434667 KCNH8Q96L42 1107 aa15.42■□□□□ 0.06
SCAF4-203ENST00000434667 SUPT16HQ9Y5B9 1047 aaKnown RBP15.4■□□□□ 0.06
SCAF4-203ENST00000434667 RAPGEF2Q9Y4G8 1499 aa15.39■□□□□ 0.05
SCAF4-203ENST00000434667 ARAP1Q96P48 1450 aa15.37■□□□□ 0.05
SCAF4-203ENST00000434667 ITGAEP38570 1179 aa15.36■□□□□ 0.05
SCAF4-203ENST00000434667 CUX2O14529 1486 aa15.33■□□□□ 0.05
SCAF4-203ENST00000434667 APLP2Q06481 763 aa15.33■□□□□ 0.04
SCAF4-203ENST00000434667 PABPN1Q86U42 306 aaKnown RBP eCLIP15.31■□□□□ 0.04
SCAF4-203ENST00000434667 VPS8Q8N3P4 1428 aa15.31■□□□□ 0.04
SCAF4-203ENST00000434667 CFAP43Q8NDM7 1665 aa15.3■□□□□ 0.04
SCAF4-203ENST00000434667 TSHZ2Q9NRE2 1034 aa15.3■□□□□ 0.04
SCAF4-203ENST00000434667 CLIP1P30622 1438 aa15.29■□□□□ 0.04
SCAF4-203ENST00000434667 MAP3K1Q13233 1512 aa15.29■□□□□ 0.04
SCAF4-203ENST00000434667 CC2D2AQ9P2K1 1620 aa15.28■□□□□ 0.04
SCAF4-203ENST00000434667 LRRIQ1Q96JM4 1722 aa15.25■□□□□ 0.03
SCAF4-203ENST00000434667 HIRIP3Q9BW71 556 aaPredicted RBP15.22■□□□□ 0.03
SCAF4-203ENST00000434667 KANK4Q5T7N3 995 aaPredicted RBP15.22■□□□□ 0.03
SCAF4-203ENST00000434667 ABCA5Q8WWZ7 1642 aa15.22■□□□□ 0.03
SCAF4-203ENST00000434667 CTTNBP2Q8WZ74 1663 aa15.21■□□□□ 0.03
SCAF4-203ENST00000434667 DNMBPQ6XZF7 1577 aa15.19■□□□□ 0.02
SCAF4-203ENST00000434667 ERICH6Q7L0X2 663 aa15.17■□□□□ 0.02
SCAF4-203ENST00000434667 ARHGAP35Q9NRY4 1499 aa15.16■□□□□ 0.02
SCAF4-203ENST00000434667 CUL7Q14999 1698 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms