RNA–Protein interactions for RNA: ENST00000434667.3

SCAF4-203, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 3,846 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-203ENST00000434667 NISCHQ9Y2I1 1504 aa21.56■■□□□ 1.04
SCAF4-203ENST00000434667 CCDC180Q9P1Z9 1646 aa18.85■□□□□ 0.61
SCAF4-203ENST00000434667 ZCCHC6Q5VYS8 1495 aaKnown RBP18.4■□□□□ 0.54
SCAF4-203ENST00000434667 SHROOM4Q9ULL8 1493 aa18.22■□□□□ 0.51
SCAF4-203ENST00000434667 DCAF1Q9Y4B6 1507 aa18.15■□□□□ 0.5
SCAF4-203ENST00000434667 SUPT5HO00267 1087 aaKnown RBP18.05■□□□□ 0.48
SCAF4-203ENST00000434667 MYO15BQ96JP2 1530 aa17.72■□□□□ 0.43
SCAF4-203ENST00000434667 PPARGC1BQ86YN6 1023 aaKnown RBP17.69■□□□□ 0.42
SCAF4-203ENST00000434667 PCGF6Q9BYE7 350 aa17.63■□□□□ 0.41
SCAF4-203ENST00000434667 HRCP23327 699 aa17.6■□□□□ 0.41
SCAF4-203ENST00000434667 ABCC9O60706 1549 aa17.42■□□□□ 0.38
SCAF4-203ENST00000434667 CHIC1Q5VXU3 224 aa17.41■□□□□ 0.38
SCAF4-203ENST00000434667 DCAF8L2P0C7V8 631 aa17.4■□□□□ 0.38
SCAF4-203ENST00000434667 LOC105371045A0A1W2PR82 267 aa17.28■□□□□ 0.36
SCAF4-203ENST00000434667 NACADO15069 1562 aa17.07■□□□□ 0.32
SCAF4-203ENST00000434667 EIF4G1Q04637 1599 aaKnown RBP17.04■□□□□ 0.32
SCAF4-203ENST00000434667 EHMT2Q96KQ7 1210 aa17.01■□□□□ 0.31
SCAF4-203ENST00000434667 UNC13AQ9UPW8 1703 aa17■□□□□ 0.31
SCAF4-203ENST00000434667 SCRIBQ14160 1630 aa16.91■□□□□ 0.3
SCAF4-203ENST00000434667 RB1CC1Q8TDY2 1594 aa16.86■□□□□ 0.29
SCAF4-203ENST00000434667 RSF1Q96T23 1441 aaPredicted RBP16.85■□□□□ 0.29
SCAF4-203ENST00000434667 FAM9AQ8IZU1 332 aaPredicted RBP16.81■□□□□ 0.28
SCAF4-203ENST00000434667 TRIM26Q12899 539 aaPredicted RBP16.78■□□□□ 0.28
SCAF4-203ENST00000434667 BAZ1AQ9NRL2 1556 aaPredicted RBP16.74■□□□□ 0.27
SCAF4-203ENST00000434667 SCAF1Q9H7N4 1312 aaKnown RBP16.72■□□□□ 0.27
SCAF4-203ENST00000434667 MROH2BQ7Z745 1585 aa16.65■□□□□ 0.26
SCAF4-203ENST00000434667 WIZO95785 1651 aa16.62■□□□□ 0.25
SCAF4-203ENST00000434667 PEG3Q9GZU2 1588 aa16.61■□□□□ 0.25
SCAF4-203ENST00000434667 CECR2Q9BXF3 1484 aa16.58■□□□□ 0.24
SCAF4-203ENST00000434667 BICRAQ9NZM4 1560 aa16.58■□□□□ 0.24
SCAF4-203ENST00000434667 SMARCA4P51532 1647 aa16.53■□□□□ 0.24
SCAF4-203ENST00000434667 TTBK1Q5TCY1 1321 aaPredicted RBP16.5■□□□□ 0.23
SCAF4-203ENST00000434667 TRIM41Q8WV44 630 aa16.48■□□□□ 0.23
SCAF4-203ENST00000434667 TOP2AP11388 1531 aaKnown RBP16.46■□□□□ 0.23
SCAF4-203ENST00000434667 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.44■□□□□ 0.22
SCAF4-203ENST00000434667 SMARCA2P51531 1590 aa16.4■□□□□ 0.22
SCAF4-203ENST00000434667 ZEB1P37275 1124 aaPredicted RBP16.37■□□□□ 0.21
SCAF4-203ENST00000434667 NEUROD1Q13562 356 aa16.36■□□□□ 0.21
SCAF4-203ENST00000434667 PELP1Q8IZL8 1130 aaKnown RBP16.32■□□□□ 0.2
SCAF4-203ENST00000434667 CCER1Q8TC90 406 aaPredicted RBP16.26■□□□□ 0.19
SCAF4-203ENST00000434667 GTF3C3Q9Y5Q9 886 aa16.24■□□□□ 0.19
SCAF4-203ENST00000434667 ACIN1Q9UKV3 1341 aaKnown RBP16.22■□□□□ 0.19
SCAF4-203ENST00000434667 YTHDC1Q96MU7 727 aaKnown RBP16.16■□□□□ 0.18
SCAF4-203ENST00000434667 CCDC88BA6NC98 1476 aa16.13■□□□□ 0.17
SCAF4-203ENST00000434667 DIEXFQ68CQ4 756 aaKnown RBP16.12■□□□□ 0.17
SCAF4-203ENST00000434667 PRDM2Q13029 1718 aa16.04■□□□□ 0.16
SCAF4-203ENST00000434667 BIVM-ERCC5R4GMW8 1640 aa16■□□□□ 0.15
SCAF4-203ENST00000434667 ABCC8Q09428 1581 aa15.97■□□□□ 0.15
SCAF4-203ENST00000434667 WRNQ14191 1432 aaPredicted RBP eCLIP15.94■□□□□ 0.141e-8■■■■■ 41.8
SCAF4-203ENST00000434667 CENPBP07199 599 aaPredicted RBP15.94■□□□□ 0.14
SCAF4-203ENST00000434667 SYNJ1O43426 1573 aa15.93■□□□□ 0.14
SCAF4-203ENST00000434667 KIF21BO75037 1637 aa15.93■□□□□ 0.14
SCAF4-203ENST00000434667 HMGXB3Q12766 1538 aa15.92■□□□□ 0.14
SCAF4-203ENST00000434667 ATAD2BQ9ULI0 1458 aa15.9■□□□□ 0.14
SCAF4-203ENST00000434667 TOP2BQ02880 1626 aa15.85■□□□□ 0.13
SCAF4-203ENST00000434667 MIER1Q8N108 512 aa15.83■□□□□ 0.12
SCAF4-203ENST00000434667 HNRNPUL2Q1KMD3 747 aaKnown RBP15.82■□□□□ 0.12
SCAF4-203ENST00000434667 RANGAP1P46060 587 aaPredicted RBP15.8■□□□□ 0.12
SCAF4-203ENST00000434667 EEA1Q15075 1411 aa15.77■□□□□ 0.12
SCAF4-203ENST00000434667 ZNF316A6NFI3 1004 aaPredicted RBP15.76■□□□□ 0.11
SCAF4-203ENST00000434667 UBTFP17480 764 aaKnown RBP15.75■□□□□ 0.11
SCAF4-203ENST00000434667 RUSC2Q8N2Y8 1516 aa15.71■□□□□ 0.11
SCAF4-203ENST00000434667 NCAPD3P42695 1498 aa15.71■□□□□ 0.11
SCAF4-203ENST00000434667 SOGA1O94964 1423 aa15.68■□□□□ 0.1
SCAF4-203ENST00000434667 BAZ1BQ9UIG0 1483 aaKnown RBP15.65■□□□□ 0.1
SCAF4-203ENST00000434667 TNIKQ9UKE5 1360 aa15.64■□□□□ 0.09
SCAF4-203ENST00000434667 CEP162Q5TB80 1403 aa15.63■□□□□ 0.09
SCAF4-203ENST00000434667 ERICH3Q5RHP9 1530 aa15.63■□□□□ 0.09
SCAF4-203ENST00000434667 CUX1P39880 1505 aa15.56■□□□□ 0.08
SCAF4-203ENST00000434667 CFTRP13569 1480 aa15.55■□□□□ 0.08
SCAF4-203ENST00000434667 PRXQ9BXM0 1461 aa15.54■□□□□ 0.08
SCAF4-203ENST00000434667 WDR97A6NE52 1622 aa15.53■□□□□ 0.08
SCAF4-203ENST00000434667 GOLGA3Q08378 1498 aa15.53■□□□□ 0.08
SCAF4-203ENST00000434667 CSRNP3Q8WYN3 585 aa15.5■□□□□ 0.07
SCAF4-203ENST00000434667 CEP164Q9UPV0 1460 aa15.48■□□□□ 0.07
SCAF4-203ENST00000434667 MYT1Q01538 1121 aa15.46■□□□□ 0.06
SCAF4-203ENST00000434667 BCANQ96GW7 911 aa15.44■□□□□ 0.06
SCAF4-203ENST00000434667 KCNH8Q96L42 1107 aa15.42■□□□□ 0.06
SCAF4-203ENST00000434667 SUPT16HQ9Y5B9 1047 aaKnown RBP15.4■□□□□ 0.06
SCAF4-203ENST00000434667 RAPGEF2Q9Y4G8 1499 aa15.39■□□□□ 0.05
SCAF4-203ENST00000434667 ARAP1Q96P48 1450 aa15.37■□□□□ 0.05
SCAF4-203ENST00000434667 ITGAEP38570 1179 aa15.36■□□□□ 0.05
SCAF4-203ENST00000434667 CUX2O14529 1486 aa15.33■□□□□ 0.05
SCAF4-203ENST00000434667 APLP2Q06481 763 aa15.33■□□□□ 0.04
SCAF4-203ENST00000434667 PABPN1Q86U42 306 aaKnown RBP eCLIP15.31■□□□□ 0.04
SCAF4-203ENST00000434667 VPS8Q8N3P4 1428 aa15.31■□□□□ 0.04
SCAF4-203ENST00000434667 CFAP43Q8NDM7 1665 aa15.3■□□□□ 0.04
SCAF4-203ENST00000434667 TSHZ2Q9NRE2 1034 aa15.3■□□□□ 0.04
SCAF4-203ENST00000434667 CLIP1P30622 1438 aa15.29■□□□□ 0.04
SCAF4-203ENST00000434667 MAP3K1Q13233 1512 aa15.29■□□□□ 0.04
SCAF4-203ENST00000434667 CC2D2AQ9P2K1 1620 aa15.28■□□□□ 0.04
SCAF4-203ENST00000434667 LRRIQ1Q96JM4 1722 aa15.25■□□□□ 0.03
SCAF4-203ENST00000434667 HIRIP3Q9BW71 556 aaPredicted RBP15.22■□□□□ 0.03
SCAF4-203ENST00000434667 KANK4Q5T7N3 995 aaPredicted RBP15.22■□□□□ 0.03
SCAF4-203ENST00000434667 ABCA5Q8WWZ7 1642 aa15.22■□□□□ 0.03
SCAF4-203ENST00000434667 CTTNBP2Q8WZ74 1663 aa15.21■□□□□ 0.03
SCAF4-203ENST00000434667 DNMBPQ6XZF7 1577 aa15.19■□□□□ 0.02
SCAF4-203ENST00000434667 ERICH6Q7L0X2 663 aa15.17■□□□□ 0.02
SCAF4-203ENST00000434667 ARHGAP35Q9NRY4 1499 aa15.16■□□□□ 0.02
SCAF4-203ENST00000434667 CUL7Q14999 1698 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms