RNA–Protein interactions for RNA: ENST00000406659.3

DNMT3A-206, Transcript of DNA methyltransferase 3 alpha, humanhuman

TSL 1 (best) BASIC

Gene DNMT3A, Length 1,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3A-206ENST00000406659 EFCAB5A4FU69 1503 aa37.52■■■■□ 3.6
DNMT3A-206ENST00000406659 KANK4Q5T7N3 995 aaPredicted RBP37.5■■■■□ 3.59
DNMT3A-206ENST00000406659 FHAD1B1AJZ9 1412 aa37.49■■■■□ 3.59
DNMT3A-206ENST00000406659 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP37.48■■■■□ 3.59
DNMT3A-206ENST00000406659 P3H3Q8IVL6 736 aa37.48■■■■□ 3.59
DNMT3A-206ENST00000406659 GRIN2BQ13224 1484 aa37.45■■■■□ 3.59
DNMT3A-206ENST00000406659 CCER1Q8TC90 406 aaPredicted RBP37.44■■■■□ 3.58
DNMT3A-206ENST00000406659 THOC2Q8NI27 1593 aaKnown RBP37.4■■■■□ 3.58
DNMT3A-206ENST00000406659 FHOD3Q2V2M9 1422 aa37.4■■■■□ 3.58
DNMT3A-206ENST00000406659 MAP3K1Q13233 1512 aa37.4■■■■□ 3.58
DNMT3A-206ENST00000406659 ZNF608Q9ULD9 1512 aaPredicted RBP37.38■■■■□ 3.58
DNMT3A-206ENST00000406659 ADAMTS12P58397 1594 aa37.37■■■■□ 3.57
DNMT3A-206ENST00000406659 HNRNPUL2Q1KMD3 747 aaKnown RBP37.34■■■■□ 3.57
DNMT3A-206ENST00000406659 TIAM1Q13009 1591 aa37.34■■■■□ 3.57
DNMT3A-206ENST00000406659 PCF11O94913 1555 aaKnown RBP37.3■■■■□ 3.56
DNMT3A-206ENST00000406659 SAMD9Q5K651 1589 aa37.26■■■■□ 3.56
DNMT3A-206ENST00000406659 FMN1Q68DA7 1419 aa37.24■■■■□ 3.55
DNMT3A-206ENST00000406659 FYCO1Q9BQS8 1478 aa37.24■■■■□ 3.55
DNMT3A-206ENST00000406659 CASKIN1Q8WXD9 1431 aa37.23■■■■□ 3.55
DNMT3A-206ENST00000406659 ATP1B4Q9UN42 357 aaPredicted RBP37.23■■■■□ 3.55
DNMT3A-206ENST00000406659 EIF4G3O43432 1585 aaKnown RBP37.22■■■■□ 3.55
DNMT3A-206ENST00000406659 CFAP43Q8NDM7 1665 aa37.18■■■■□ 3.54
DNMT3A-206ENST00000406659 LRRC9Q6ZRR7 1453 aa37.18■■■■□ 3.54
DNMT3A-206ENST00000406659 RRBP1Q9P2E9 1410 aaKnown RBP37.18■■■■□ 3.54
DNMT3A-206ENST00000406659 SNAPC4Q5SXM2 1469 aa37.15■■■■□ 3.54
DNMT3A-206ENST00000406659 IQGAP2Q13576 1575 aa37.13■■■■□ 3.54
DNMT3A-206ENST00000406659 CCNB3Q8WWL7 1395 aa37.07■■■■□ 3.52
DNMT3A-206ENST00000406659 MAGI1Q96QZ7 1491 aaPredicted RBP37.03■■■■□ 3.52
DNMT3A-206ENST00000406659 GRIN2AQ12879 1464 aa37■■■■□ 3.51
DNMT3A-206ENST00000406659 KIAA0586Q9BVV6 1533 aa36.96■■■■□ 3.51
DNMT3A-206ENST00000406659 UGGT2Q9NYU1 1516 aa36.94■■■■□ 3.5
DNMT3A-206ENST00000406659 CHMP7Q8WUX9 453 aaPredicted RBP36.91■■■■□ 3.5
DNMT3A-206ENST00000406659 SYNJ2O15056 1496 aa36.91■■■■□ 3.5
DNMT3A-206ENST00000406659 PHLDB1Q86UU1 1377 aa36.9■■■■□ 3.5
DNMT3A-206ENST00000406659 MTUS2Q5JR59 1369 aa36.82■■■■□ 3.48
DNMT3A-206ENST00000406659 LRRIQ1Q96JM4 1722 aa36.82■■■■□ 3.48
DNMT3A-206ENST00000406659 FBLN2P98095 1184 aa36.8■■■■□ 3.48
DNMT3A-206ENST00000406659 ITGAEP38570 1179 aa36.78■■■■□ 3.48
DNMT3A-206ENST00000406659 CCDC18Q5T9S5 1454 aa36.76■■■■□ 3.47
DNMT3A-206ENST00000406659 HECW1Q76N89 1606 aa36.76■■■■□ 3.47
DNMT3A-206ENST00000406659 CEP170Q5SW79 1584 aa36.74■■■■□ 3.47
DNMT3A-206ENST00000406659 KIAA0556O60303 1618 aa36.73■■■■□ 3.47
DNMT3A-206ENST00000406659 DISP1Q96F81 1524 aa36.72■■■■□ 3.47
DNMT3A-206ENST00000406659 FAM50AQ14320 339 aaKnown RBP36.72■■■■□ 3.47
DNMT3A-206ENST00000406659 EHBP1L1Q8N3D4 1523 aa36.67■■■■□ 3.46
DNMT3A-206ENST00000406659 NUP160Q12769 1436 aa36.66■■■■□ 3.46
DNMT3A-206ENST00000406659 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP36.63■■■■□ 3.455e-6■■□□□ 11.5
DNMT3A-206ENST00000406659 EPRSP07814 1512 aaKnown RBP36.62■■■■□ 3.45
DNMT3A-206ENST00000406659 SUPT6HQ7KZ85 1726 aaKnown RBP36.61■■■■□ 3.45
DNMT3A-206ENST00000406659 NCOA2Q15596 1464 aa36.6■■■■□ 3.45
DNMT3A-206ENST00000406659 FGD6Q6ZV73 1430 aa36.59■■■■□ 3.45
DNMT3A-206ENST00000406659 DHX57Q6P158 1386 aaKnown RBP36.58■■■■□ 3.45
DNMT3A-206ENST00000406659 CLSPNQ9HAW4 1339 aa36.56■■■■□ 3.44
DNMT3A-206ENST00000406659 JPH4Q96JJ6 628 aa36.54■■■■□ 3.44
DNMT3A-206ENST00000406659 MAGI3Q5TCQ9 1506 aa36.53■■■■□ 3.44
DNMT3A-206ENST00000406659 CARMIL2Q6F5E8 1435 aa36.52■■■■□ 3.44
DNMT3A-206ENST00000406659 CDK13Q14004 1512 aaKnown RBP36.51■■■■□ 3.44
DNMT3A-206ENST00000406659 MYOM3Q5VTT5 1437 aa36.51■■■■□ 3.43
DNMT3A-206ENST00000406659 SETD5Q9C0A6 1442 aa36.5■■■■□ 3.43
DNMT3A-206ENST00000406659 RAPGEF6Q8TEU7 1601 aa36.48■■■■□ 3.43
DNMT3A-206ENST00000406659 RAB3GAP2Q9H2M9 1393 aa36.48■■■■□ 3.43
DNMT3A-206ENST00000406659 ARHGEF11O15085 1522 aa36.45■■■■□ 3.43
DNMT3A-206ENST00000406659 ARID3CA6NKF2 412 aa36.45■■■■□ 3.43
DNMT3A-206ENST00000406659 NUP153P49790 1475 aaKnown RBP36.41■■■■□ 3.42
DNMT3A-206ENST00000406659 CDK11AQ9UQ88 783 aaPredicted RBP36.33■■■■□ 3.41
DNMT3A-206ENST00000406659 PTPN23Q9H3S7 1636 aa36.32■■■■□ 3.41
DNMT3A-206ENST00000406659 CHD1O14646 1710 aa36.31■■■■□ 3.4
DNMT3A-206ENST00000406659 PLB1Q6P1J6 1458 aa36.29■■■■□ 3.4
DNMT3A-206ENST00000406659 TCOF1Q13428 1488 aaKnown RBP36.24■■■■□ 3.39
DNMT3A-206ENST00000406659 MIA2Q96PC5 1412 aa36.23■■■■□ 3.39
DNMT3A-206ENST00000406659 PRG4Q92954 1404 aaPredicted RBP36.21■■■■□ 3.39
DNMT3A-206ENST00000406659 PTPRKQ15262 1439 aa36.2■■■■□ 3.39
DNMT3A-206ENST00000406659 ZNF316A6NFI3 1004 aaPredicted RBP36.17■■■■□ 3.38
DNMT3A-206ENST00000406659 ABCA8O94911 1581 aa36.15■■■■□ 3.38
DNMT3A-206ENST00000406659 TROQ12816 1431 aaPredicted RBP36.14■■■■□ 3.38
DNMT3A-206ENST00000406659 HFM1A2PYH4 1435 aa36.13■■■■□ 3.37
DNMT3A-206ENST00000406659 MAPKBP1O60336 1514 aa36.11■■■■□ 3.37
DNMT3A-206ENST00000406659 PTPRGP23470 1445 aa36.09■■■■□ 3.37
DNMT3A-206ENST00000406659 SHROOM2Q13796 1616 aa36.04■■■■□ 3.36
DNMT3A-206ENST00000406659 NAIPQ13075 1403 aa36.04■■■■□ 3.36
DNMT3A-206ENST00000406659 DIEXFQ68CQ4 756 aaKnown RBP36.01■■■■□ 3.35
DNMT3A-206ENST00000406659 ADCY10Q96PN6 1610 aa36■■■■□ 3.35
DNMT3A-206ENST00000406659 ATP10BO94823 1461 aa35.99■■■■□ 3.35
DNMT3A-206ENST00000406659 PLEKHD1A6NEE1 506 aa35.99■■■■□ 3.35
DNMT3A-206ENST00000406659 CHIC2Q9UKJ5 165 aa35.97■■■■□ 3.35
DNMT3A-206ENST00000406659 AKNAQ7Z591 1439 aa35.93■■■■□ 3.34
DNMT3A-206ENST00000406659 KIF14Q15058 1648 aa35.92■■■■□ 3.34
DNMT3A-206ENST00000406659 RRP7BPQ9NSQ0 103 aa35.92■■■■□ 3.34
DNMT3A-206ENST00000406659 ITSN2Q9NZM3 1697 aa35.92■■■■□ 3.34
DNMT3A-206ENST00000406659 UACAQ9BZF9 1416 aa35.91■■■■□ 3.34
DNMT3A-206ENST00000406659 CFDP1Q9UEE9 299 aaPredicted RBP35.89■■■■□ 3.34
DNMT3A-206ENST00000406659 GCC2Q8IWJ2 1684 aa35.88■■■■□ 3.33
DNMT3A-206ENST00000406659 GPATCH8Q9UKJ3 1502 aaKnown RBP35.88■■■■□ 3.33
DNMT3A-206ENST00000406659 DAPK1P53355 1430 aa35.88■■■■□ 3.33
DNMT3A-206ENST00000406659 ZNF644Q9H582 1327 aaPredicted RBP35.87■■■■□ 3.33
DNMT3A-206ENST00000406659 DNMT1P26358 1616 aaKnown RBP35.86■■■■□ 3.33
DNMT3A-206ENST00000406659 CLASP1Q7Z460 1538 aa35.84■■■■□ 3.33
DNMT3A-206ENST00000406659 ABCC5O15440 1437 aa35.82■■■■□ 3.33
DNMT3A-206ENST00000406659 SIN3AQ96ST3 1273 aa35.82■■■■□ 3.33
DNMT3A-206ENST00000406659 NEUROD1Q13562 356 aa35.81■■■■□ 3.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms