RNA–Protein interactions for RNA: ENST00000392456.3

CCDC50-202, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CCDC50, Length 2,454 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-202ENST00000392456 PRKCSHP14314 528 aaPredicted RBP29.19■■■□□ 2.26
CCDC50-202ENST00000392456 FHAD1B1AJZ9 1412 aa29.15■■■□□ 2.26
CCDC50-202ENST00000392456 BCL11AQ9H165 835 aa29.14■■■□□ 2.25
CCDC50-202ENST00000392456 ARHGAP35Q9NRY4 1499 aa29.13■■■□□ 2.25
CCDC50-202ENST00000392456 ARAP1Q96P48 1450 aa29.13■■■□□ 2.25
CCDC50-202ENST00000392456 SNAPC4Q5SXM2 1469 aa29.11■■■□□ 2.25
CCDC50-202ENST00000392456 ADAMTS12P58397 1594 aa29.11■■■□□ 2.25
CCDC50-202ENST00000392456 VPS8Q8N3P4 1428 aa29.09■■■□□ 2.25
CCDC50-202ENST00000392456 P3H3Q8IVL6 736 aa29.05■■■□□ 2.24
CCDC50-202ENST00000392456 TRIM26Q12899 539 aaPredicted RBP29.01■■■□□ 2.23
CCDC50-202ENST00000392456 ACIN1Q9UKV3 1341 aaKnown RBP29■■■□□ 2.23
CCDC50-202ENST00000392456 CTTNBP2Q8WZ74 1663 aa29■■■□□ 2.23
CCDC50-202ENST00000392456 FBLN2P98095 1184 aa28.96■■■□□ 2.23
CCDC50-202ENST00000392456 MAGI1Q96QZ7 1491 aaPredicted RBP28.94■■■□□ 2.22
CCDC50-202ENST00000392456 CHMP7Q8WUX9 453 aaPredicted RBP28.93■■■□□ 2.22
CCDC50-202ENST00000392456 GRIN2AQ12879 1464 aa28.91■■■□□ 2.22
CCDC50-202ENST00000392456 FHOD3Q2V2M9 1422 aa28.9■■■□□ 2.22
CCDC50-202ENST00000392456 SYNJ2O15056 1496 aa28.88■■■□□ 2.21
CCDC50-202ENST00000392456 APLP2Q06481 763 aa28.81■■■□□ 2.2
CCDC50-202ENST00000392456 IQGAP2Q13576 1575 aa28.8■■■□□ 2.2
CCDC50-202ENST00000392456 EFCAB5A4FU69 1503 aa28.79■■■□□ 2.2
CCDC50-202ENST00000392456 NEUROD1Q13562 356 aa28.79■■■□□ 2.2
CCDC50-202ENST00000392456 CEP170Q5SW79 1584 aa28.76■■■□□ 2.19
CCDC50-202ENST00000392456 KIAA0586Q9BVV6 1533 aa28.76■■■□□ 2.19
CCDC50-202ENST00000392456 KANK4Q5T7N3 995 aaPredicted RBP28.76■■■□□ 2.19
CCDC50-202ENST00000392456 GTF3C3Q9Y5Q9 886 aa28.76■■■□□ 2.19
CCDC50-202ENST00000392456 SAMD9Q5K651 1589 aa28.75■■■□□ 2.19
CCDC50-202ENST00000392456 CENPBP07199 599 aaPredicted RBP28.72■■■□□ 2.19
CCDC50-202ENST00000392456 ATP1B4Q9UN42 357 aaPredicted RBP28.69■■■□□ 2.18
CCDC50-202ENST00000392456 NUP160Q12769 1436 aa28.69■■■□□ 2.18
CCDC50-202ENST00000392456 ZEB1P37275 1124 aaPredicted RBP28.68■■■□□ 2.18
CCDC50-202ENST00000392456 PCF11O94913 1555 aaKnown RBP28.65■■■□□ 2.18
CCDC50-202ENST00000392456 UGGT2Q9NYU1 1516 aa28.65■■■□□ 2.18
CCDC50-202ENST00000392456 DISP1Q96F81 1524 aa28.61■■■□□ 2.17
CCDC50-202ENST00000392456 FMN1Q68DA7 1419 aa28.61■■■□□ 2.17
CCDC50-202ENST00000392456 JPH4Q96JJ6 628 aa28.59■■■□□ 2.17
CCDC50-202ENST00000392456 CASKIN1Q8WXD9 1431 aa28.58■■■□□ 2.17
CCDC50-202ENST00000392456 CHD1O14646 1710 aa28.57■■■□□ 2.16
CCDC50-202ENST00000392456 FYCO1Q9BQS8 1478 aa28.53■■■□□ 2.16
CCDC50-202ENST00000392456 TIAM1Q13009 1591 aa28.52■■■□□ 2.16
CCDC50-202ENST00000392456 ERICH6Q7L0X2 663 aa28.51■■■□□ 2.15
CCDC50-202ENST00000392456 KIAA0556O60303 1618 aa28.51■■■□□ 2.15
CCDC50-202ENST00000392456 MAP3K1Q13233 1512 aa28.46■■■□□ 2.15
CCDC50-202ENST00000392456 LRRC9Q6ZRR7 1453 aa28.44■■■□□ 2.14
CCDC50-202ENST00000392456 ARID3CA6NKF2 412 aa28.43■■■□□ 2.14
CCDC50-202ENST00000392456 LRRIQ1Q96JM4 1722 aa28.41■■■□□ 2.14
CCDC50-202ENST00000392456 CFAP43Q8NDM7 1665 aa28.38■■■□□ 2.13
CCDC50-202ENST00000392456 PRG4Q92954 1404 aaPredicted RBP28.37■■■□□ 2.13
CCDC50-202ENST00000392456 CARMIL2Q6F5E8 1435 aa28.36■■■□□ 2.13
CCDC50-202ENST00000392456 PLB1Q6P1J6 1458 aa28.29■■■□□ 2.12
CCDC50-202ENST00000392456 HNRNPUL2Q1KMD3 747 aaKnown RBP28.29■■■□□ 2.12
CCDC50-202ENST00000392456 PHLDB1Q86UU1 1377 aa28.28■■■□□ 2.12
CCDC50-202ENST00000392456 CDK13Q14004 1512 aaKnown RBP28.28■■■□□ 2.12
CCDC50-202ENST00000392456 EPRSP07814 1512 aaKnown RBP28.28■■■□□ 2.12
CCDC50-202ENST00000392456 HECW1Q76N89 1606 aa28.26■■■□□ 2.11
CCDC50-202ENST00000392456 MTUS2Q5JR59 1369 aa28.25■■■□□ 2.11
CCDC50-202ENST00000392456 NUP153P49790 1475 aaKnown RBP28.25■■■□□ 2.11
CCDC50-202ENST00000392456 ERCC6L2Q5T890 1561 aa28.25■■■□□ 2.11
CCDC50-202ENST00000392456 MAGI3Q5TCQ9 1506 aa28.24■■■□□ 2.11
CCDC50-202ENST00000392456 SHROOM2Q13796 1616 aa28.23■■■□□ 2.11
CCDC50-202ENST00000392456 CLASP1Q7Z460 1538 aa28.23■■■□□ 2.11
CCDC50-202ENST00000392456 RRBP1Q9P2E9 1410 aaKnown RBP28.21■■■□□ 2.11
CCDC50-202ENST00000392456 RAPGEF6Q8TEU7 1601 aa28.21■■■□□ 2.11
CCDC50-202ENST00000392456 CCDC18Q5T9S5 1454 aa28.2■■■□□ 2.11
CCDC50-202ENST00000392456 ANP32EQ9BTT0 268 aa28.19■■■□□ 2.1
CCDC50-202ENST00000392456 PTPRGP23470 1445 aa28.18■■■□□ 2.1
CCDC50-202ENST00000392456 CCNB3Q8WWL7 1395 aa28.17■■■□□ 2.1
CCDC50-202ENST00000392456 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.16■■■□□ 2.1
CCDC50-202ENST00000392456 ABCA8O94911 1581 aa28.1■■■□□ 2.09
CCDC50-202ENST00000392456 NCOA2Q15596 1464 aa28.09■■■□□ 2.09
CCDC50-202ENST00000392456 ITGAEP38570 1179 aa28.09■■■□□ 2.09
CCDC50-202ENST00000392456 EHBP1L1Q8N3D4 1523 aa28.09■■■□□ 2.09
CCDC50-202ENST00000392456 OSCARQ8IYS5 282 aa28.07■■■□□ 2.08
CCDC50-202ENST00000392456 FAM50AQ14320 339 aaKnown RBP28.04■■■□□ 2.08
CCDC50-202ENST00000392456 ATP10BO94823 1461 aa28.01■■■□□ 2.08
CCDC50-202ENST00000392456 SUPT6HQ7KZ85 1726 aaKnown RBP28.01■■■□□ 2.07
CCDC50-202ENST00000392456 ARHGEF11O15085 1522 aa28■■■□□ 2.07
CCDC50-202ENST00000392456 FGD6Q6ZV73 1430 aa27.98■■■□□ 2.07
CCDC50-202ENST00000392456 UACAQ9BZF9 1416 aa27.98■■■□□ 2.07
CCDC50-202ENST00000392456 CDK11AQ9UQ88 783 aaPredicted RBP27.97■■■□□ 2.07
CCDC50-202ENST00000392456 MYOM3Q5VTT5 1437 aa27.96■■■□□ 2.07
CCDC50-202ENST00000392456 TROQ12816 1431 aaPredicted RBP27.92■■■□□ 2.06
CCDC50-202ENST00000392456 CCER1Q8TC90 406 aaPredicted RBP27.92■■■□□ 2.06
CCDC50-202ENST00000392456 PLEKHD1A6NEE1 506 aa27.89■■■□□ 2.06
CCDC50-202ENST00000392456 ABCC2Q92887 1545 aa27.84■■■□□ 2.05
CCDC50-202ENST00000392456 KIF14Q15058 1648 aa27.84■■■□□ 2.05
CCDC50-202ENST00000392456 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.83■■■□□ 2.04
CCDC50-202ENST00000392456 PTPRKQ15262 1439 aa27.8■■■□□ 2.04
CCDC50-202ENST00000392456 ZNF644Q9H582 1327 aaPredicted RBP27.79■■■□□ 2.04
CCDC50-202ENST00000392456 PTPN23Q9H3S7 1636 aa27.79■■■□□ 2.04
CCDC50-202ENST00000392456 MIA2Q96PC5 1412 aa27.74■■■□□ 2.03
CCDC50-202ENST00000392456 UHRF1BP1LA0JNW5 1464 aa27.73■■■□□ 2.03
CCDC50-202ENST00000392456 GPATCH8Q9UKJ3 1502 aaKnown RBP27.73■■■□□ 2.03
CCDC50-202ENST00000392456 TCOF1Q13428 1488 aaKnown RBP27.72■■■□□ 2.03
CCDC50-202ENST00000392456 ADCY10Q96PN6 1610 aa27.72■■■□□ 2.03
CCDC50-202ENST00000392456 ABCC10Q5T3U5 1492 aa27.7■■■□□ 2.02
CCDC50-202ENST00000392456 CFDP1Q9UEE9 299 aaPredicted RBP27.69■■■□□ 2.02
CCDC50-202ENST00000392456 KDM5BQ9UGL1 1544 aa27.69■■■□□ 2.02
CCDC50-202ENST00000392456 RAB3GAP2Q9H2M9 1393 aa27.68■■■□□ 2.02
CCDC50-202ENST00000392456 KCNH8Q96L42 1107 aa27.68■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms