RNA–Protein interactions for RNA: ENST00000392456.3

CCDC50-202, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CCDC50, Length 2,454 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-202ENST00000392456 NISCHQ9Y2I1 1504 aa42.05■■■■■ 4.32
CCDC50-202ENST00000392456 CCDC180Q9P1Z9 1646 aa36.47■■■■□ 3.43
CCDC50-202ENST00000392456 ZCCHC6Q5VYS8 1495 aaKnown RBP35.29■■■■□ 3.24
CCDC50-202ENST00000392456 DCAF8L2P0C7V8 631 aa35.04■■■■□ 3.2
CCDC50-202ENST00000392456 ABCC9O60706 1549 aa34.86■■■■□ 3.17
CCDC50-202ENST00000392456 DCAF1Q9Y4B6 1507 aa34.61■■■■□ 3.13
CCDC50-202ENST00000392456 SHROOM4Q9ULL8 1493 aa34.58■■■■□ 3.13
CCDC50-202ENST00000392456 MYO15BQ96JP2 1530 aa34.17■■■■□ 3.06
CCDC50-202ENST00000392456 NACADO15069 1562 aa34.05■■■■□ 3.04
CCDC50-202ENST00000392456 SCRIBQ14160 1630 aa33.79■■■■□ 3
CCDC50-202ENST00000392456 RB1CC1Q8TDY2 1594 aa33.78■■■■□ 3
CCDC50-202ENST00000392456 SUPT5HO00267 1087 aaKnown RBP33.25■■■□□ 2.91
CCDC50-202ENST00000392456 UNC13AQ9UPW8 1703 aa33.18■■■□□ 2.9
CCDC50-202ENST00000392456 PABPN1Q86U42 306 aaKnown RBP eCLIP33■■■□□ 2.87
CCDC50-202ENST00000392456 BICRAQ9NZM4 1560 aa32.9■■■□□ 2.86
CCDC50-202ENST00000392456 CECR2Q9BXF3 1484 aa32.84■■■□□ 2.85
CCDC50-202ENST00000392456 RSF1Q96T23 1441 aaPredicted RBP32.7■■■□□ 2.82
CCDC50-202ENST00000392456 MROH2BQ7Z745 1585 aa32.58■■■□□ 2.81
CCDC50-202ENST00000392456 BAZ1AQ9NRL2 1556 aaPredicted RBP32.4■■■□□ 2.78
CCDC50-202ENST00000392456 SMARCA4P51532 1647 aa32.3■■■□□ 2.76
CCDC50-202ENST00000392456 WIZO95785 1651 aa32.3■■■□□ 2.76
CCDC50-202ENST00000392456 PELP1Q8IZL8 1130 aaKnown RBP32.26■■■□□ 2.75
CCDC50-202ENST00000392456 EIF4G1Q04637 1599 aaKnown RBP31.87■■■□□ 2.69
CCDC50-202ENST00000392456 ATAD2BQ9ULI0 1458 aa31.84■■■□□ 2.69
CCDC50-202ENST00000392456 TOP2AP11388 1531 aaKnown RBP31.83■■■□□ 2.69
CCDC50-202ENST00000392456 PEG3Q9GZU2 1588 aa31.83■■■□□ 2.69
CCDC50-202ENST00000392456 CHIC1Q5VXU3 224 aa31.74■■■□□ 2.67
CCDC50-202ENST00000392456 SMARCA2P51531 1590 aa31.69■■■□□ 2.66
CCDC50-202ENST00000392456 CCDC88BA6NC98 1476 aa31.64■■■□□ 2.66
CCDC50-202ENST00000392456 BAZ1BQ9UIG0 1483 aaKnown RBP31.62■■■□□ 2.65
CCDC50-202ENST00000392456 NCAPD3P42695 1498 aa31.52■■■□□ 2.64
CCDC50-202ENST00000392456 MYT1Q01538 1121 aa31.49■■■□□ 2.63
CCDC50-202ENST00000392456 CC2D2AQ9P2K1 1620 aa31.43■■■□□ 2.62
CCDC50-202ENST00000392456 HMGXB3Q12766 1538 aa31.38■■■□□ 2.61
CCDC50-202ENST00000392456 TRIM41Q8WV44 630 aa31.14■■■□□ 2.57
CCDC50-202ENST00000392456 HRCP23327 699 aa31.09■■■□□ 2.57
CCDC50-202ENST00000392456 DNAJC5BQ9UF47 199 aa31.03■■■□□ 2.56
CCDC50-202ENST00000392456 ABCC8Q09428 1581 aa31.02■■■□□ 2.56
CCDC50-202ENST00000392456 CFTRP13569 1480 aa30.83■■■□□ 2.53
CCDC50-202ENST00000392456 CADPSQ9ULU8 1353 aa30.76■■■□□ 2.51
CCDC50-202ENST00000392456 FAM9AQ8IZU1 332 aaPredicted RBP30.74■■■□□ 2.51
CCDC50-202ENST00000392456 WRNQ14191 1432 aaPredicted RBP eCLIP30.73■■■□□ 2.519e-6■■■■■ 50.1
CCDC50-202ENST00000392456 LOC105371045A0A1W2PR82 267 aa30.67■■■□□ 2.5
CCDC50-202ENST00000392456 NESP48681 1621 aa30.63■■■□□ 2.49
CCDC50-202ENST00000392456 SYNJ1O43426 1573 aa30.63■■■□□ 2.49
CCDC50-202ENST00000392456 SOGA1O94964 1423 aa30.47■■■□□ 2.47
CCDC50-202ENST00000392456 PRDM2Q13029 1718 aa30.47■■■□□ 2.47
CCDC50-202ENST00000392456 CUX1P39880 1505 aa30.43■■■□□ 2.46
CCDC50-202ENST00000392456 EHMT2Q96KQ7 1210 aa30.43■■■□□ 2.46
CCDC50-202ENST00000392456 FANCD2Q9BXW9 1451 aa30.42■■■□□ 2.46
CCDC50-202ENST00000392456 TOP2BQ02880 1626 aa30.41■■■□□ 2.46
CCDC50-202ENST00000392456 RUSC2Q8N2Y8 1516 aa30.4■■■□□ 2.46
CCDC50-202ENST00000392456 LAMC3Q9Y6N6 1575 aa30.37■■■□□ 2.45
CCDC50-202ENST00000392456 BIVM-ERCC5R4GMW8 1640 aa30.33■■■□□ 2.45
CCDC50-202ENST00000392456 PPARGC1BQ86YN6 1023 aaKnown RBP30.2■■■□□ 2.43
CCDC50-202ENST00000392456 PDS5BQ9NTI5 1447 aa30.2■■■□□ 2.42
CCDC50-202ENST00000392456 SCAF1Q9H7N4 1312 aaKnown RBP30.18■■■□□ 2.42
CCDC50-202ENST00000392456 CSRNP3Q8WYN3 585 aa30.18■■■□□ 2.42
CCDC50-202ENST00000392456 CEP164Q9UPV0 1460 aa30.17■■■□□ 2.42
CCDC50-202ENST00000392456 EEA1Q15075 1411 aa30.12■■■□□ 2.41
CCDC50-202ENST00000392456 KIF21AQ7Z4S6 1674 aa30.1■■■□□ 2.41
CCDC50-202ENST00000392456 FGD5Q6ZNL6 1462 aa30.09■■■□□ 2.41
CCDC50-202ENST00000392456 URB2Q14146 1524 aaKnown RBP30.08■■■□□ 2.41
CCDC50-202ENST00000392456 TOPBP1Q92547 1522 aa30.08■■■□□ 2.41
CCDC50-202ENST00000392456 TTBK1Q5TCY1 1321 aaPredicted RBP30.07■■■□□ 2.4
CCDC50-202ENST00000392456 DNMBPQ6XZF7 1577 aa30.05■■■□□ 2.4
CCDC50-202ENST00000392456 POLA1P09884 1462 aaPredicted RBP29.96■■■□□ 2.39
CCDC50-202ENST00000392456 RAD54L2Q9Y4B4 1467 aa29.96■■■□□ 2.39
CCDC50-202ENST00000392456 KIF27Q86VH2 1401 aa29.91■■■□□ 2.38
CCDC50-202ENST00000392456 CUX2O14529 1486 aa29.91■■■□□ 2.38
CCDC50-202ENST00000392456 UBTFP17480 764 aaKnown RBP29.84■■■□□ 2.37
CCDC50-202ENST00000392456 MRC2Q9UBG0 1479 aa29.81■■■□□ 2.36
CCDC50-202ENST00000392456 RAPGEF2Q9Y4G8 1499 aa29.8■■■□□ 2.36
CCDC50-202ENST00000392456 GOLGA3Q08378 1498 aa29.8■■■□□ 2.36
CCDC50-202ENST00000392456 ERCC6Q03468 1493 aa29.79■■■□□ 2.36
CCDC50-202ENST00000392456 KIF21BO75037 1637 aa29.77■■■□□ 2.36
CCDC50-202ENST00000392456 ABCA10Q8WWZ4 1543 aa29.76■■■□□ 2.35
CCDC50-202ENST00000392456 IGF1RP08069 1367 aa29.76■■■□□ 2.35
CCDC50-202ENST00000392456 PRXQ9BXM0 1461 aa29.74■■■□□ 2.35
CCDC50-202ENST00000392456 TNIKQ9UKE5 1360 aa29.74■■■□□ 2.35
CCDC50-202ENST00000392456 TDRD9Q8NDG6 1382 aaKnown RBP29.69■■■□□ 2.34
CCDC50-202ENST00000392456 WDR62O43379 1518 aa29.64■■■□□ 2.33
CCDC50-202ENST00000392456 CEP162Q5TB80 1403 aa29.63■■■□□ 2.33
CCDC50-202ENST00000392456 WDR97A6NE52 1622 aa29.6■■■□□ 2.33
CCDC50-202ENST00000392456 TARBP1Q13395 1621 aaKnown RBP29.6■■■□□ 2.33
CCDC50-202ENST00000392456 CARMIL1Q5VZK9 1371 aa29.57■■■□□ 2.32
CCDC50-202ENST00000392456 THOC2Q8NI27 1593 aaKnown RBP29.57■■■□□ 2.32
CCDC50-202ENST00000392456 ERICH3Q5RHP9 1530 aa29.56■■■□□ 2.32
CCDC50-202ENST00000392456 RANGAP1P46060 587 aaPredicted RBP29.54■■■□□ 2.32
CCDC50-202ENST00000392456 PCGF6Q9BYE7 350 aa29.53■■■□□ 2.32
CCDC50-202ENST00000392456 GAPVD1Q14C86 1478 aa29.51■■■□□ 2.31
CCDC50-202ENST00000392456 ABCA5Q8WWZ7 1642 aa29.49■■■□□ 2.31
CCDC50-202ENST00000392456 AQRO60306 1485 aaKnown RBP eCLIP29.49■■■□□ 2.313e-7■■■■■ 29
CCDC50-202ENST00000392456 ZNF608Q9ULD9 1512 aaPredicted RBP29.46■■■□□ 2.31
CCDC50-202ENST00000392456 IFT140Q96RY7 1462 aa29.43■■■□□ 2.3
CCDC50-202ENST00000392456 CLIP1P30622 1438 aa29.4■■■□□ 2.3
CCDC50-202ENST00000392456 CUL7Q14999 1698 aa29.3■■■□□ 2.28
CCDC50-202ENST00000392456 PBRM1Q86U86 1689 aa29.25■■■□□ 2.27
CCDC50-202ENST00000392456 GRIN2BQ13224 1484 aa29.24■■■□□ 2.27
CCDC50-202ENST00000392456 EIF4G3O43432 1585 aaKnown RBP29.21■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms