RNA–Protein interactions for RNA: ENST00000355379.3

SCAMP3-202, Transcript of secretory carrier membrane protein 3, humanhuman

TSL 1 (best) BASIC

Gene SCAMP3, Length 1,537 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP3-202ENST00000355379 PCGF6Q9BYE7 350 aa35.73■■■■□ 3.31
SCAMP3-202ENST00000355379 EFCAB5A4FU69 1503 aa35.62■■■■□ 3.29
SCAMP3-202ENST00000355379 SNAPC4Q5SXM2 1469 aa35.59■■■■□ 3.29
SCAMP3-202ENST00000355379 MAGI1Q96QZ7 1491 aaPredicted RBP35.58■■■■□ 3.29
SCAMP3-202ENST00000355379 PPARGC1BQ86YN6 1023 aaKnown RBP35.51■■■■□ 3.27
SCAMP3-202ENST00000355379 SAMD9Q5K651 1589 aa35.46■■■■□ 3.27
SCAMP3-202ENST00000355379 APLP2Q06481 763 aa35.44■■■■□ 3.26
SCAMP3-202ENST00000355379 GRIN2AQ12879 1464 aa35.43■■■■□ 3.26
SCAMP3-202ENST00000355379 SYNJ2O15056 1496 aa35.42■■■■□ 3.26
SCAMP3-202ENST00000355379 IQGAP2Q13576 1575 aa35.41■■■■□ 3.26
SCAMP3-202ENST00000355379 KIAA0586Q9BVV6 1533 aa35.31■■■■□ 3.24
SCAMP3-202ENST00000355379 FHOD3Q2V2M9 1422 aa35.31■■■■□ 3.24
SCAMP3-202ENST00000355379 MAP3K1Q13233 1512 aa35.31■■■■□ 3.24
SCAMP3-202ENST00000355379 UGGT2Q9NYU1 1516 aa35.27■■■■□ 3.24
SCAMP3-202ENST00000355379 FMN1Q68DA7 1419 aa35.25■■■■□ 3.23
SCAMP3-202ENST00000355379 P3H3Q8IVL6 736 aa35.25■■■■□ 3.23
SCAMP3-202ENST00000355379 CHMP7Q8WUX9 453 aaPredicted RBP35.25■■■■□ 3.23
SCAMP3-202ENST00000355379 PCF11O94913 1555 aaKnown RBP35.24■■■■□ 3.23
SCAMP3-202ENST00000355379 CEP170Q5SW79 1584 aa35.21■■■■□ 3.23
SCAMP3-202ENST00000355379 FYCO1Q9BQS8 1478 aa35.21■■■■□ 3.23
SCAMP3-202ENST00000355379 CASKIN1Q8WXD9 1431 aa35.2■■■■□ 3.22
SCAMP3-202ENST00000355379 NUP160Q12769 1436 aa35.18■■■■□ 3.22
SCAMP3-202ENST00000355379 TIAM1Q13009 1591 aa35.18■■■■□ 3.22
SCAMP3-202ENST00000355379 TTBK1Q5TCY1 1321 aaPredicted RBP35.17■■■■□ 3.22
SCAMP3-202ENST00000355379 CFAP43Q8NDM7 1665 aa35.15■■■■□ 3.22
SCAMP3-202ENST00000355379 FBLN2P98095 1184 aa35.06■■■■□ 3.2
SCAMP3-202ENST00000355379 KANK4Q5T7N3 995 aaPredicted RBP35.06■■■■□ 3.2
SCAMP3-202ENST00000355379 KIAA0556O60303 1618 aa35.06■■■■□ 3.2
SCAMP3-202ENST00000355379 CHD1O14646 1710 aa35.03■■■■□ 3.2
SCAMP3-202ENST00000355379 DISP1Q96F81 1524 aa35.03■■■■□ 3.2
SCAMP3-202ENST00000355379 LRRC9Q6ZRR7 1453 aa34.99■■■■□ 3.19
SCAMP3-202ENST00000355379 LRRIQ1Q96JM4 1722 aa34.93■■■■□ 3.18
SCAMP3-202ENST00000355379 HECW1Q76N89 1606 aa34.91■■■■□ 3.18
SCAMP3-202ENST00000355379 ATP1B4Q9UN42 357 aaPredicted RBP34.88■■■■□ 3.17
SCAMP3-202ENST00000355379 HRCP23327 699 aa34.87■■■■□ 3.17
SCAMP3-202ENST00000355379 JPH4Q96JJ6 628 aa34.86■■■■□ 3.17
SCAMP3-202ENST00000355379 CARMIL2Q6F5E8 1435 aa34.86■■■■□ 3.17
SCAMP3-202ENST00000355379 CCDC18Q5T9S5 1454 aa34.84■■■■□ 3.17
SCAMP3-202ENST00000355379 RRBP1Q9P2E9 1410 aaKnown RBP34.82■■■■□ 3.16
SCAMP3-202ENST00000355379 RAPGEF6Q8TEU7 1601 aa34.75■■■■□ 3.15
SCAMP3-202ENST00000355379 SHROOM2Q13796 1616 aa34.74■■■■□ 3.15
SCAMP3-202ENST00000355379 EPRSP07814 1512 aaKnown RBP34.72■■■■□ 3.15
SCAMP3-202ENST00000355379 EHBP1L1Q8N3D4 1523 aa34.69■■■■□ 3.14
SCAMP3-202ENST00000355379 MTUS2Q5JR59 1369 aa34.66■■■■□ 3.14
SCAMP3-202ENST00000355379 CCNB3Q8WWL7 1395 aa34.65■■■■□ 3.14
SCAMP3-202ENST00000355379 CLASP1Q7Z460 1538 aa34.63■■■■□ 3.13
SCAMP3-202ENST00000355379 PRG4Q92954 1404 aaPredicted RBP34.63■■■■□ 3.13
SCAMP3-202ENST00000355379 SUPT6HQ7KZ85 1726 aaKnown RBP34.62■■■■□ 3.13
SCAMP3-202ENST00000355379 PHLDB1Q86UU1 1377 aa34.62■■■■□ 3.13
SCAMP3-202ENST00000355379 NUP153P49790 1475 aaKnown RBP34.6■■■■□ 3.13
SCAMP3-202ENST00000355379 CDK13Q14004 1512 aaKnown RBP34.57■■■■□ 3.13
SCAMP3-202ENST00000355379 MAGI3Q5TCQ9 1506 aa34.57■■■■□ 3.13
SCAMP3-202ENST00000355379 ABCA8O94911 1581 aa34.56■■■■□ 3.12
SCAMP3-202ENST00000355379 HNRNPUL2Q1KMD3 747 aaKnown RBP34.53■■■■□ 3.12
SCAMP3-202ENST00000355379 PLB1Q6P1J6 1458 aa34.52■■■■□ 3.12
SCAMP3-202ENST00000355379 ARHGEF11O15085 1522 aa34.52■■■■□ 3.12
SCAMP3-202ENST00000355379 NCOA2Q15596 1464 aa34.51■■■■□ 3.11
SCAMP3-202ENST00000355379 ZEB1P37275 1124 aaPredicted RBP34.5■■■■□ 3.11
SCAMP3-202ENST00000355379 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP34.48■■■■□ 3.114e-6■■■■■ 30.2
SCAMP3-202ENST00000355379 PTPRGP23470 1445 aa34.45■■■■□ 3.11
SCAMP3-202ENST00000355379 FGD6Q6ZV73 1430 aa34.4■■■■□ 3.1
SCAMP3-202ENST00000355379 MYOM3Q5VTT5 1437 aa34.4■■■■□ 3.1
SCAMP3-202ENST00000355379 CDK11AQ9UQ88 783 aaPredicted RBP34.4■■■■□ 3.1
SCAMP3-202ENST00000355379 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.36■■■■□ 3.09
SCAMP3-202ENST00000355379 ERCC6L2Q5T890 1561 aa34.36■■■■□ 3.09
SCAMP3-202ENST00000355379 CCER1Q8TC90 406 aaPredicted RBP34.31■■■■□ 3.08
SCAMP3-202ENST00000355379 ADCY10Q96PN6 1610 aa34.31■■■■□ 3.08
SCAMP3-202ENST00000355379 TROQ12816 1431 aaPredicted RBP34.31■■■■□ 3.08
SCAMP3-202ENST00000355379 ARID3CA6NKF2 412 aa34.3■■■■□ 3.08
SCAMP3-202ENST00000355379 ATP10BO94823 1461 aa34.28■■■■□ 3.08
SCAMP3-202ENST00000355379 UACAQ9BZF9 1416 aa34.28■■■■□ 3.08
SCAMP3-202ENST00000355379 FAM50AQ14320 339 aaKnown RBP34.27■■■■□ 3.08
SCAMP3-202ENST00000355379 PTPN23Q9H3S7 1636 aa34.26■■■■□ 3.08
SCAMP3-202ENST00000355379 MIA2Q96PC5 1412 aa34.24■■■■□ 3.07
SCAMP3-202ENST00000355379 TCOF1Q13428 1488 aaKnown RBP34.23■■■■□ 3.07
SCAMP3-202ENST00000355379 ABCC2Q92887 1545 aa34.2■■■■□ 3.07
SCAMP3-202ENST00000355379 ITGAEP38570 1179 aa34.16■■■■□ 3.06
SCAMP3-202ENST00000355379 UHRF1BP1LA0JNW5 1464 aa34.14■■■■□ 3.06
SCAMP3-202ENST00000355379 ITSN2Q9NZM3 1697 aa34.14■■■■□ 3.06
SCAMP3-202ENST00000355379 OSCARQ8IYS5 282 aa34.14■■■■□ 3.06
SCAMP3-202ENST00000355379 PLEKHD1A6NEE1 506 aa34.13■■■■□ 3.05
SCAMP3-202ENST00000355379 KIF14Q15058 1648 aa34.12■■■■□ 3.05
SCAMP3-202ENST00000355379 SETD5Q9C0A6 1442 aa34.07■■■■□ 3.04
SCAMP3-202ENST00000355379 ABCC10Q5T3U5 1492 aa34.02■■■■□ 3.04
SCAMP3-202ENST00000355379 GPATCH8Q9UKJ3 1502 aaKnown RBP34.01■■■■□ 3.03
SCAMP3-202ENST00000355379 RAB3GAP2Q9H2M9 1393 aa34■■■■□ 3.03
SCAMP3-202ENST00000355379 PTPRKQ15262 1439 aa33.98■■■■□ 3.03
SCAMP3-202ENST00000355379 KDM5BQ9UGL1 1544 aa33.98■■■■□ 3.03
SCAMP3-202ENST00000355379 CDC42BPAQ5VT25 1732 aa33.98■■■■□ 3.03
SCAMP3-202ENST00000355379 ZCCHC11Q5TAX3 1644 aaKnown RBP33.97■■■■□ 3.03
SCAMP3-202ENST00000355379 DHX57Q6P158 1386 aaKnown RBP33.96■■■■□ 3.03
SCAMP3-202ENST00000355379 CLSPNQ9HAW4 1339 aa33.95■■■■□ 3.03
SCAMP3-202ENST00000355379 DNMT1P26358 1616 aaKnown RBP33.91■■■■□ 3.02
SCAMP3-202ENST00000355379 HFM1A2PYH4 1435 aa33.91■■■■□ 3.02
SCAMP3-202ENST00000355379 AKNAQ7Z591 1439 aa33.88■■■■□ 3.01
SCAMP3-202ENST00000355379 CFDP1Q9UEE9 299 aaPredicted RBP33.87■■■■□ 3.01
SCAMP3-202ENST00000355379 CAMSAP2Q08AD1 1489 aa33.87■■■■□ 3.01
SCAMP3-202ENST00000355379 GCC2Q8IWJ2 1684 aa33.84■■■■□ 3.01
SCAMP3-202ENST00000355379 DAPK1P53355 1430 aa33.83■■■■□ 3.01
SCAMP3-202ENST00000355379 PREX2Q70Z35 1606 aa33.82■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms