RNA–Protein interactions for RNA: ENST00000350028.4

SAMM50-201, Transcript of SAMM50 sorting and assembly machinery component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SAMM50, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SAMM50-201ENST00000350028 ZNF608Q9ULD9 1512 aaPredicted RBP25.31■■□□□ 1.64
SAMM50-201ENST00000350028 CTTNBP2Q8WZ74 1663 aa25.31■■□□□ 1.64
SAMM50-201ENST00000350028 MAP3K1Q13233 1512 aa25.28■■□□□ 1.64
SAMM50-201ENST00000350028 EFCAB5A4FU69 1503 aa25.27■■□□□ 1.64
SAMM50-201ENST00000350028 FHAD1B1AJZ9 1412 aa25.26■■□□□ 1.63
SAMM50-201ENST00000350028 KANK4Q5T7N3 995 aaPredicted RBP25.26■■□□□ 1.63
SAMM50-201ENST00000350028 AQRO60306 1485 aaKnown RBP eCLIP25.24■■□□□ 1.631e-10■■■■■ 44.8
SAMM50-201ENST00000350028 HNRNPUL2Q1KMD3 747 aaKnown RBP25.2■■□□□ 1.62
SAMM50-201ENST00000350028 EIF4G3O43432 1585 aaKnown RBP25.18■■□□□ 1.62
SAMM50-201ENST00000350028 TIAM1Q13009 1591 aa25.18■■□□□ 1.62
SAMM50-201ENST00000350028 PBRM1Q86U86 1689 aa25.17■■□□□ 1.62
SAMM50-201ENST00000350028 RRBP1Q9P2E9 1410 aaKnown RBP25.14■■□□□ 1.62
SAMM50-201ENST00000350028 FHOD3Q2V2M9 1422 aa25.11■■□□□ 1.61
SAMM50-201ENST00000350028 P3H3Q8IVL6 736 aa25.11■■□□□ 1.61
SAMM50-201ENST00000350028 PCF11O94913 1555 aaKnown RBP25.1■■□□□ 1.61
SAMM50-201ENST00000350028 CFAP43Q8NDM7 1665 aa25.09■■□□□ 1.61
SAMM50-201ENST00000350028 FYCO1Q9BQS8 1478 aa25.08■■□□□ 1.61
SAMM50-201ENST00000350028 GRIN2BQ13224 1484 aa25.08■■□□□ 1.6
SAMM50-201ENST00000350028 CASKIN1Q8WXD9 1431 aa25.07■■□□□ 1.6
SAMM50-201ENST00000350028 LRRC9Q6ZRR7 1453 aa25.07■■□□□ 1.6
SAMM50-201ENST00000350028 SAMD9Q5K651 1589 aa25.07■■□□□ 1.6
SAMM50-201ENST00000350028 FMN1Q68DA7 1419 aa25.06■■□□□ 1.6
SAMM50-201ENST00000350028 ADAMTS12P58397 1594 aa25.05■■□□□ 1.6
SAMM50-201ENST00000350028 CCNB3Q8WWL7 1395 aa25.02■■□□□ 1.6
SAMM50-201ENST00000350028 SNAPC4Q5SXM2 1469 aa24.98■■□□□ 1.59
SAMM50-201ENST00000350028 ATP1B4Q9UN42 357 aaPredicted RBP24.95■■□□□ 1.58
SAMM50-201ENST00000350028 IQGAP2Q13576 1575 aa24.91■■□□□ 1.58
SAMM50-201ENST00000350028 MAGI1Q96QZ7 1491 aaPredicted RBP24.9■■□□□ 1.58
SAMM50-201ENST00000350028 PHLDB1Q86UU1 1377 aa24.87■■□□□ 1.57
SAMM50-201ENST00000350028 CLSPNQ9HAW4 1339 aa24.84■■□□□ 1.57
SAMM50-201ENST00000350028 SYNJ2O15056 1496 aa24.82■■□□□ 1.56
SAMM50-201ENST00000350028 UGGT2Q9NYU1 1516 aa24.81■■□□□ 1.56
SAMM50-201ENST00000350028 KIAA0586Q9BVV6 1533 aa24.79■■□□□ 1.56
SAMM50-201ENST00000350028 GRIN2AQ12879 1464 aa24.78■■□□□ 1.56
SAMM50-201ENST00000350028 DHX57Q6P158 1386 aaKnown RBP24.78■■□□□ 1.56
SAMM50-201ENST00000350028 LRRIQ1Q96JM4 1722 aa24.78■■□□□ 1.56
SAMM50-201ENST00000350028 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.77■■□□□ 1.56
SAMM50-201ENST00000350028 MTUS2Q5JR59 1369 aa24.76■■□□□ 1.55
SAMM50-201ENST00000350028 CCDC18Q5T9S5 1454 aa24.74■■□□□ 1.55
SAMM50-201ENST00000350028 CHD1O14646 1710 aa24.74■■□□□ 1.55
SAMM50-201ENST00000350028 ITGAEP38570 1179 aa24.73■■□□□ 1.55
SAMM50-201ENST00000350028 CHMP7Q8WUX9 453 aaPredicted RBP24.72■■□□□ 1.55
SAMM50-201ENST00000350028 HECW1Q76N89 1606 aa24.72■■□□□ 1.55
SAMM50-201ENST00000350028 FBLN2P98095 1184 aa24.72■■□□□ 1.55
SAMM50-201ENST00000350028 FAM50AQ14320 339 aaKnown RBP24.7■■□□□ 1.54
SAMM50-201ENST00000350028 EHBP1L1Q8N3D4 1523 aa24.7■■□□□ 1.54
SAMM50-201ENST00000350028 CEP170Q5SW79 1584 aa24.68■■□□□ 1.54
SAMM50-201ENST00000350028 SUPT6HQ7KZ85 1726 aaKnown RBP24.67■■□□□ 1.54
SAMM50-201ENST00000350028 SETD5Q9C0A6 1442 aa24.66■■□□□ 1.54
SAMM50-201ENST00000350028 FGD6Q6ZV73 1430 aa24.65■■□□□ 1.54
SAMM50-201ENST00000350028 KIAA0556O60303 1618 aa24.65■■□□□ 1.54
SAMM50-201ENST00000350028 NUP160Q12769 1436 aa24.64■■□□□ 1.54
SAMM50-201ENST00000350028 RAB3GAP2Q9H2M9 1393 aa24.64■■□□□ 1.53
SAMM50-201ENST00000350028 NCOA2Q15596 1464 aa24.64■■□□□ 1.53
SAMM50-201ENST00000350028 DISP1Q96F81 1524 aa24.63■■□□□ 1.53
SAMM50-201ENST00000350028 EPRSP07814 1512 aaKnown RBP24.61■■□□□ 1.53
SAMM50-201ENST00000350028 ZNF316A6NFI3 1004 aaPredicted RBP24.61■■□□□ 1.53
SAMM50-201ENST00000350028 MYOM3Q5VTT5 1437 aa24.59■■□□□ 1.53
SAMM50-201ENST00000350028 ARHGEF11O15085 1522 aa24.58■■□□□ 1.53
SAMM50-201ENST00000350028 MAGI3Q5TCQ9 1506 aa24.56■■□□□ 1.52
SAMM50-201ENST00000350028 DIEXFQ68CQ4 756 aaKnown RBP24.52■■□□□ 1.52
SAMM50-201ENST00000350028 CDK13Q14004 1512 aaKnown RBP24.5■■□□□ 1.51
SAMM50-201ENST00000350028 RAPGEF6Q8TEU7 1601 aa24.5■■□□□ 1.51
SAMM50-201ENST00000350028 PTPN23Q9H3S7 1636 aa24.47■■□□□ 1.51
SAMM50-201ENST00000350028 CARMIL2Q6F5E8 1435 aa24.47■■□□□ 1.51
SAMM50-201ENST00000350028 CLASP1Q7Z460 1538 aa24.47■■□□□ 1.51
SAMM50-201ENST00000350028 TCOF1Q13428 1488 aaKnown RBP24.45■■□□□ 1.5
SAMM50-201ENST00000350028 JPH4Q96JJ6 628 aa24.44■■□□□ 1.5
SAMM50-201ENST00000350028 NUP153P49790 1475 aaKnown RBP24.44■■□□□ 1.5
SAMM50-201ENST00000350028 MAPKBP1O60336 1514 aa24.43■■□□□ 1.5
SAMM50-201ENST00000350028 MIA2Q96PC5 1412 aa24.42■■□□□ 1.5
SAMM50-201ENST00000350028 HFM1A2PYH4 1435 aa24.4■■□□□ 1.5
SAMM50-201ENST00000350028 PTPRKQ15262 1439 aa24.4■■□□□ 1.5
SAMM50-201ENST00000350028 CDK11AQ9UQ88 783 aaPredicted RBP24.39■■□□□ 1.5
SAMM50-201ENST00000350028 SHROOM2Q13796 1616 aa24.38■■□□□ 1.49
SAMM50-201ENST00000350028 OSCARQ8IYS5 282 aa24.35■■□□□ 1.49
SAMM50-201ENST00000350028 ARID3CA6NKF2 412 aa24.34■■□□□ 1.49
SAMM50-201ENST00000350028 ERCC6L2Q5T890 1561 aa24.31■■□□□ 1.48
SAMM50-201ENST00000350028 NAIPQ13075 1403 aa24.31■■□□□ 1.48
SAMM50-201ENST00000350028 PLB1Q6P1J6 1458 aa24.3■■□□□ 1.48
SAMM50-201ENST00000350028 TROQ12816 1431 aaPredicted RBP24.28■■□□□ 1.48
SAMM50-201ENST00000350028 AKNAQ7Z591 1439 aa24.28■■□□□ 1.48
SAMM50-201ENST00000350028 PRG4Q92954 1404 aaPredicted RBP24.28■■□□□ 1.48
SAMM50-201ENST00000350028 TIMELESSQ9UNS1 1208 aa24.27■■□□□ 1.48
SAMM50-201ENST00000350028 UACAQ9BZF9 1416 aa24.27■■□□□ 1.48
SAMM50-201ENST00000350028 ABCA8O94911 1581 aa24.26■■□□□ 1.47
SAMM50-201ENST00000350028 GCC2Q8IWJ2 1684 aa24.24■■□□□ 1.47
SAMM50-201ENST00000350028 ADCY10Q96PN6 1610 aa24.23■■□□□ 1.47
SAMM50-201ENST00000350028 ITSN2Q9NZM3 1697 aa24.18■■□□□ 1.46
SAMM50-201ENST00000350028 SIN3AQ96ST3 1273 aa24.18■■□□□ 1.46
SAMM50-201ENST00000350028 DNMT1P26358 1616 aaKnown RBP24.17■■□□□ 1.46
SAMM50-201ENST00000350028 ACIN1Q9UKV3 1341 aaKnown RBP24.16■■□□□ 1.46
SAMM50-201ENST00000350028 RRP7BPQ9NSQ0 103 aa24.15■■□□□ 1.46
SAMM50-201ENST00000350028 CHIC2Q9UKJ5 165 aa24.15■■□□□ 1.46
SAMM50-201ENST00000350028 DAPK1P53355 1430 aa24.15■■□□□ 1.46
SAMM50-201ENST00000350028 NEUROD1Q13562 356 aa24.15■■□□□ 1.46
SAMM50-201ENST00000350028 ROCK1Q13464 1354 aa24.15■■□□□ 1.46
SAMM50-201ENST00000350028 PTPRGP23470 1445 aa24.15■■□□□ 1.46
SAMM50-201ENST00000350028 ATP10BO94823 1461 aa24.14■■□□□ 1.45
SAMM50-201ENST00000350028 PLEKHD1A6NEE1 506 aa24.13■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms