RNA–Protein interactions for RNA: ENST00000338910.8

PSPC1-201, Transcript of paraspeckle component 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PSPC1, Length 2,407 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-201ENST00000338910 TARBP1Q13395 1621 aaKnown RBP28.15■■■□□ 2.1
PSPC1-201ENST00000338910 GAPVD1Q14C86 1478 aa28.15■■■□□ 2.1
PSPC1-201ENST00000338910 ARHGAP35Q9NRY4 1499 aa28.12■■■□□ 2.09
PSPC1-201ENST00000338910 CUL7Q14999 1698 aa28.12■■■□□ 2.09
PSPC1-201ENST00000338910 ERCC6Q03468 1493 aa28.07■■■□□ 2.08
PSPC1-201ENST00000338910 WDR62O43379 1518 aa28.03■■■□□ 2.08
PSPC1-201ENST00000338910 AQRO60306 1485 aaKnown RBP eCLIP28■■■□□ 2.072e-11■■□□□ 13.8
PSPC1-201ENST00000338910 HNRNPUL2Q1KMD3 747 aaKnown RBP27.96■■■□□ 2.07
PSPC1-201ENST00000338910 KANK4Q5T7N3 995 aaPredicted RBP27.95■■■□□ 2.06
PSPC1-201ENST00000338910 ZNF316A6NFI3 1004 aaPredicted RBP27.94■■■□□ 2.06
PSPC1-201ENST00000338910 IFT140Q96RY7 1462 aa27.92■■■□□ 2.06
PSPC1-201ENST00000338910 P3H3Q8IVL6 736 aa27.91■■■□□ 2.06
PSPC1-201ENST00000338910 ZNF608Q9ULD9 1512 aaPredicted RBP27.9■■■□□ 2.06
PSPC1-201ENST00000338910 PBRM1Q86U86 1689 aa27.9■■■□□ 2.06
PSPC1-201ENST00000338910 CTTNBP2Q8WZ74 1663 aa27.9■■■□□ 2.06
PSPC1-201ENST00000338910 THOC2Q8NI27 1593 aaKnown RBP27.88■■■□□ 2.05
PSPC1-201ENST00000338910 GRIN2BQ13224 1484 aa27.83■■■□□ 2.05
PSPC1-201ENST00000338910 FHAD1B1AJZ9 1412 aa27.81■■■□□ 2.04
PSPC1-201ENST00000338910 FHOD3Q2V2M9 1422 aa27.8■■■□□ 2.04
PSPC1-201ENST00000338910 EFCAB5A4FU69 1503 aa27.77■■■□□ 2.04
PSPC1-201ENST00000338910 ADAMTS12P58397 1594 aa27.76■■■□□ 2.04
PSPC1-201ENST00000338910 YTHDC1Q96MU7 727 aaKnown RBP27.72■■■□□ 2.03
PSPC1-201ENST00000338910 EIF4G3O43432 1585 aaKnown RBP27.72■■■□□ 2.03
PSPC1-201ENST00000338910 ATP1B4Q9UN42 357 aaPredicted RBP27.69■■■□□ 2.02
PSPC1-201ENST00000338910 PCF11O94913 1555 aaKnown RBP27.67■■■□□ 2.02
PSPC1-201ENST00000338910 MIER1Q8N108 512 aa27.67■■■□□ 2.02
PSPC1-201ENST00000338910 SNAPC4Q5SXM2 1469 aa27.66■■■□□ 2.02
PSPC1-201ENST00000338910 TIAM1Q13009 1591 aa27.65■■■□□ 2.02
PSPC1-201ENST00000338910 SAMD9Q5K651 1589 aa27.63■■■□□ 2.01
PSPC1-201ENST00000338910 MAP3K1Q13233 1512 aa27.62■■■□□ 2.01
PSPC1-201ENST00000338910 FMN1Q68DA7 1419 aa27.59■■■□□ 2.01
PSPC1-201ENST00000338910 CASKIN1Q8WXD9 1431 aa27.58■■■□□ 2.01
PSPC1-201ENST00000338910 FYCO1Q9BQS8 1478 aa27.57■■■□□ 2
PSPC1-201ENST00000338910 IQGAP2Q13576 1575 aa27.57■■■□□ 2
PSPC1-201ENST00000338910 RRBP1Q9P2E9 1410 aaKnown RBP27.57■■■□□ 2
PSPC1-201ENST00000338910 LRRC9Q6ZRR7 1453 aa27.55■■■□□ 2
PSPC1-201ENST00000338910 CCNB3Q8WWL7 1395 aa27.53■■■□□ 2
PSPC1-201ENST00000338910 GRIN2AQ12879 1464 aa27.52■■■□□ 2
PSPC1-201ENST00000338910 MAGI1Q96QZ7 1491 aaPredicted RBP27.51■■■□□ 2
PSPC1-201ENST00000338910 CFAP43Q8NDM7 1665 aa27.51■■□□□ 1.99
PSPC1-201ENST00000338910 ITGAEP38570 1179 aa27.49■■□□□ 1.99
PSPC1-201ENST00000338910 CHMP7Q8WUX9 453 aaPredicted RBP27.49■■□□□ 1.99
PSPC1-201ENST00000338910 FBLN2P98095 1184 aa27.48■■□□□ 1.99
PSPC1-201ENST00000338910 KIAA0586Q9BVV6 1533 aa27.45■■□□□ 1.99
PSPC1-201ENST00000338910 SYNJ2O15056 1496 aa27.45■■□□□ 1.98
PSPC1-201ENST00000338910 PHLDB1Q86UU1 1377 aa27.41■■□□□ 1.98
PSPC1-201ENST00000338910 UGGT2Q9NYU1 1516 aa27.4■■□□□ 1.98
PSPC1-201ENST00000338910 LRRIQ1Q96JM4 1722 aa27.36■■□□□ 1.97
PSPC1-201ENST00000338910 CEP170Q5SW79 1584 aa27.35■■□□□ 1.97
PSPC1-201ENST00000338910 FAM50AQ14320 339 aaKnown RBP27.33■■□□□ 1.97
PSPC1-201ENST00000338910 DISP1Q96F81 1524 aa27.32■■□□□ 1.96
PSPC1-201ENST00000338910 MTUS2Q5JR59 1369 aa27.3■■□□□ 1.96
PSPC1-201ENST00000338910 DHX57Q6P158 1386 aaKnown RBP27.29■■□□□ 1.96
PSPC1-201ENST00000338910 KIAA0556O60303 1618 aa27.28■■□□□ 1.96
PSPC1-201ENST00000338910 CLSPNQ9HAW4 1339 aa27.28■■□□□ 1.96
PSPC1-201ENST00000338910 NUP160Q12769 1436 aa27.26■■□□□ 1.95
PSPC1-201ENST00000338910 HECW1Q76N89 1606 aa27.23■■□□□ 1.95
PSPC1-201ENST00000338910 ARID3CA6NKF2 412 aa27.21■■□□□ 1.95
PSPC1-201ENST00000338910 JPH4Q96JJ6 628 aa27.2■■□□□ 1.95
PSPC1-201ENST00000338910 CCDC18Q5T9S5 1454 aa27.2■■□□□ 1.94
PSPC1-201ENST00000338910 EPRSP07814 1512 aaKnown RBP27.19■■□□□ 1.94
PSPC1-201ENST00000338910 MAGI3Q5TCQ9 1506 aa27.16■■□□□ 1.94
PSPC1-201ENST00000338910 RAB3GAP2Q9H2M9 1393 aa27.16■■□□□ 1.94
PSPC1-201ENST00000338910 SUPT16HQ9Y5B9 1047 aaKnown RBP27.16■■□□□ 1.94
PSPC1-201ENST00000338910 CDK13Q14004 1512 aaKnown RBP27.15■■□□□ 1.94
PSPC1-201ENST00000338910 EHBP1L1Q8N3D4 1523 aa27.14■■□□□ 1.94
PSPC1-201ENST00000338910 NCOA2Q15596 1464 aa27.14■■□□□ 1.93
PSPC1-201ENST00000338910 FGD6Q6ZV73 1430 aa27.11■■□□□ 1.93
PSPC1-201ENST00000338910 SUPT6HQ7KZ85 1726 aaKnown RBP27.11■■□□□ 1.93
PSPC1-201ENST00000338910 CARMIL2Q6F5E8 1435 aa27.1■■□□□ 1.93
PSPC1-201ENST00000338910 SETD5Q9C0A6 1442 aa27.1■■□□□ 1.93
PSPC1-201ENST00000338910 NUP153P49790 1475 aaKnown RBP27.07■■□□□ 1.92
PSPC1-201ENST00000338910 RAPGEF6Q8TEU7 1601 aa27.07■■□□□ 1.92
PSPC1-201ENST00000338910 CHD1O14646 1710 aa27.05■■□□□ 1.92
PSPC1-201ENST00000338910 MYOM3Q5VTT5 1437 aa27.05■■□□□ 1.92
PSPC1-201ENST00000338910 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.05■■□□□ 1.92
PSPC1-201ENST00000338910 PLB1Q6P1J6 1458 aa27.03■■□□□ 1.92
PSPC1-201ENST00000338910 ARHGEF11O15085 1522 aa27.02■■□□□ 1.92
PSPC1-201ENST00000338910 PRG4Q92954 1404 aaPredicted RBP26.96■■□□□ 1.91
PSPC1-201ENST00000338910 TSHZ2Q9NRE2 1034 aa26.95■■□□□ 1.9
PSPC1-201ENST00000338910 CDK11AQ9UQ88 783 aaPredicted RBP26.92■■□□□ 1.9
PSPC1-201ENST00000338910 PTPN23Q9H3S7 1636 aa26.91■■□□□ 1.9
PSPC1-201ENST00000338910 PTPRKQ15262 1439 aa26.9■■□□□ 1.9
PSPC1-201ENST00000338910 MAPKBP1O60336 1514 aa26.88■■□□□ 1.89
PSPC1-201ENST00000338910 ANP32EQ9BTT0 268 aa26.85■■□□□ 1.89
PSPC1-201ENST00000338910 ABCA8O94911 1581 aa26.84■■□□□ 1.89
PSPC1-201ENST00000338910 PTPRGP23470 1445 aa26.83■■□□□ 1.89
PSPC1-201ENST00000338910 TCOF1Q13428 1488 aaKnown RBP26.81■■□□□ 1.88
PSPC1-201ENST00000338910 MIA2Q96PC5 1412 aa26.81■■□□□ 1.88
PSPC1-201ENST00000338910 TROQ12816 1431 aaPredicted RBP26.81■■□□□ 1.88
PSPC1-201ENST00000338910 SIN3AQ96ST3 1273 aa26.81■■□□□ 1.88
PSPC1-201ENST00000338910 SHROOM2Q13796 1616 aa26.79■■□□□ 1.88
PSPC1-201ENST00000338910 CHIC2Q9UKJ5 165 aa26.78■■□□□ 1.88
PSPC1-201ENST00000338910 HFM1A2PYH4 1435 aa26.77■■□□□ 1.88
PSPC1-201ENST00000338910 ATP10BO94823 1461 aa26.76■■□□□ 1.87
PSPC1-201ENST00000338910 RRP7BPQ9NSQ0 103 aa26.74■■□□□ 1.87
PSPC1-201ENST00000338910 ERCC6L2Q5T890 1561 aa26.74■■□□□ 1.87
PSPC1-201ENST00000338910 NAIPQ13075 1403 aa26.73■■□□□ 1.87
PSPC1-201ENST00000338910 PLEKHD1A6NEE1 506 aa26.73■■□□□ 1.87
PSPC1-201ENST00000338910 KIF14Q15058 1648 aa26.71■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms