RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 AQRO60306 1485 aaKnown RBP eCLIP6.61□□□□□ -1.35
MCF2-201ENST00000338585 RANGAP1P46060 587 aaPredicted RBP6.61□□□□□ -1.35
MCF2-201ENST00000338585 SCAF1Q9H7N4 1312 aaKnown RBP6.61□□□□□ -1.35
MCF2-201ENST00000338585 IFT140Q96RY7 1462 aa6.6□□□□□ -1.35
MCF2-201ENST00000338585 CUL7Q14999 1698 aa6.58□□□□□ -1.36
MCF2-201ENST00000338585 CLIP1P30622 1438 aa6.58□□□□□ -1.36
MCF2-201ENST00000338585 PBRM1Q86U86 1689 aa6.57□□□□□ -1.36
MCF2-201ENST00000338585 EIF4G3O43432 1585 aaKnown RBP6.57□□□□□ -1.36
MCF2-201ENST00000338585 GRIN2BQ13224 1484 aa6.56□□□□□ -1.36
MCF2-201ENST00000338585 PPARGC1BQ86YN6 1023 aaKnown RBP6.54□□□□□ -1.36
MCF2-201ENST00000338585 ADAMTS12P58397 1594 aa6.54□□□□□ -1.36
MCF2-201ENST00000338585 SNAPC4Q5SXM2 1469 aa6.53□□□□□ -1.36
MCF2-201ENST00000338585 FHAD1B1AJZ9 1412 aa6.53□□□□□ -1.36
MCF2-201ENST00000338585 ARAP1Q96P48 1450 aa6.53□□□□□ -1.36
MCF2-201ENST00000338585 ARHGAP35Q9NRY4 1499 aa6.52□□□□□ -1.37
MCF2-201ENST00000338585 MAPK8IP2Q13387 824 aaPredicted RBP6.52□□□□□ -1.37
MCF2-201ENST00000338585 CTTNBP2Q8WZ74 1663 aa6.51□□□□□ -1.37
MCF2-201ENST00000338585 VPS8Q8N3P4 1428 aa6.51□□□□□ -1.37
MCF2-201ENST00000338585 P3H3Q8IVL6 736 aa6.5□□□□□ -1.37
MCF2-201ENST00000338585 TTBK1Q5TCY1 1321 aaPredicted RBP6.5□□□□□ -1.37
MCF2-201ENST00000338585 MAGI1Q96QZ7 1491 aaPredicted RBP6.5□□□□□ -1.37
MCF2-201ENST00000338585 DCAF8L1A6NGE4 600 aa6.49□□□□□ -1.37
MCF2-201ENST00000338585 PCGF6Q9BYE7 350 aa6.49□□□□□ -1.37
MCF2-201ENST00000338585 GRIN2AQ12879 1464 aa6.49□□□□□ -1.37
MCF2-201ENST00000338585 FBLN2P98095 1184 aa6.49□□□□□ -1.37
MCF2-201ENST00000338585 SYNJ2O15056 1496 aa6.48□□□□□ -1.37
MCF2-201ENST00000338585 CHMP7Q8WUX9 453 aaPredicted RBP6.48□□□□□ -1.37
MCF2-201ENST00000338585 FHOD3Q2V2M9 1422 aa6.47□□□□□ -1.37
MCF2-201ENST00000338585 TRIM26Q12899 539 aaPredicted RBP6.46□□□□□ -1.37
MCF2-201ENST00000338585 IQGAP2Q13576 1575 aa6.46□□□□□ -1.38
MCF2-201ENST00000338585 CEP170Q5SW79 1584 aa6.46□□□□□ -1.38
MCF2-201ENST00000338585 EFCAB5A4FU69 1503 aa6.46□□□□□ -1.38
MCF2-201ENST00000338585 SAMD9Q5K651 1589 aa6.45□□□□□ -1.38
MCF2-201ENST00000338585 KIAA0586Q9BVV6 1533 aa6.44□□□□□ -1.38
MCF2-201ENST00000338585 NUP160Q12769 1436 aa6.44□□□□□ -1.38
MCF2-201ENST00000338585 APLP2Q06481 763 aa6.43□□□□□ -1.38
MCF2-201ENST00000338585 PCF11O94913 1555 aaKnown RBP6.43□□□□□ -1.38
MCF2-201ENST00000338585 CHD1O14646 1710 aa6.43□□□□□ -1.38
MCF2-201ENST00000338585 KANK4Q5T7N3 995 aaPredicted RBP6.43□□□□□ -1.38
MCF2-201ENST00000338585 UGGT2Q9NYU1 1516 aa6.43□□□□□ -1.38
MCF2-201ENST00000338585 ATP1B4Q9UN42 357 aaPredicted RBP6.42□□□□□ -1.38
MCF2-201ENST00000338585 DISP1Q96F81 1524 aa6.41□□□□□ -1.38
MCF2-201ENST00000338585 FMN1Q68DA7 1419 aa6.4□□□□□ -1.38
MCF2-201ENST00000338585 KIAA0556O60303 1618 aa6.4□□□□□ -1.38
MCF2-201ENST00000338585 CASKIN1Q8WXD9 1431 aa6.4□□□□□ -1.38
MCF2-201ENST00000338585 JPH4Q96JJ6 628 aa6.4□□□□□ -1.39
MCF2-201ENST00000338585 FYCO1Q9BQS8 1478 aa6.39□□□□□ -1.39
MCF2-201ENST00000338585 TIAM1Q13009 1591 aa6.39□□□□□ -1.39
MCF2-201ENST00000338585 LRRIQ1Q96JM4 1722 aa6.37□□□□□ -1.39
MCF2-201ENST00000338585 CFAP43Q8NDM7 1665 aa6.37□□□□□ -1.39
MCF2-201ENST00000338585 MAP3K1Q13233 1512 aa6.37□□□□□ -1.39
MCF2-201ENST00000338585 ARID3CA6NKF2 412 aa6.37□□□□□ -1.39
MCF2-201ENST00000338585 LRRC9Q6ZRR7 1453 aa6.36□□□□□ -1.39
MCF2-201ENST00000338585 PRG4Q92954 1404 aaPredicted RBP6.36□□□□□ -1.39
MCF2-201ENST00000338585 CARMIL2Q6F5E8 1435 aa6.36□□□□□ -1.39
MCF2-201ENST00000338585 PLB1Q6P1J6 1458 aa6.35□□□□□ -1.39
MCF2-201ENST00000338585 CLASP1Q7Z460 1538 aa6.35□□□□□ -1.39
MCF2-201ENST00000338585 HECW1Q76N89 1606 aa6.35□□□□□ -1.39
MCF2-201ENST00000338585 CDK13Q14004 1512 aaKnown RBP6.34□□□□□ -1.39
MCF2-201ENST00000338585 ERCC6L2Q5T890 1561 aa6.34□□□□□ -1.39
MCF2-201ENST00000338585 SHROOM2Q13796 1616 aa6.34□□□□□ -1.39
MCF2-201ENST00000338585 EPRSP07814 1512 aaKnown RBP6.34□□□□□ -1.39
MCF2-201ENST00000338585 NUP153P49790 1475 aaKnown RBP6.34□□□□□ -1.4
MCF2-201ENST00000338585 MAGI3Q5TCQ9 1506 aa6.33□□□□□ -1.4
MCF2-201ENST00000338585 RAPGEF6Q8TEU7 1601 aa6.33□□□□□ -1.4
MCF2-201ENST00000338585 PHLDB1Q86UU1 1377 aa6.33□□□□□ -1.4
MCF2-201ENST00000338585 MTUS2Q5JR59 1369 aa6.32□□□□□ -1.4
MCF2-201ENST00000338585 CCDC18Q5T9S5 1454 aa6.32□□□□□ -1.4
MCF2-201ENST00000338585 HNRNPUL2Q1KMD3 747 aaKnown RBP6.32□□□□□ -1.4
MCF2-201ENST00000338585 PTPRGP23470 1445 aa6.32□□□□□ -1.4
MCF2-201ENST00000338585 RRBP1Q9P2E9 1410 aaKnown RBP6.31□□□□□ -1.4
MCF2-201ENST00000338585 ABCA8O94911 1581 aa6.31□□□□□ -1.4
MCF2-201ENST00000338585 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.3□□□□□ -1.4
MCF2-201ENST00000338585 CCNB3Q8WWL7 1395 aa6.3□□□□□ -1.4
MCF2-201ENST00000338585 EHBP1L1Q8N3D4 1523 aa6.3□□□□□ -1.4
MCF2-201ENST00000338585 NCOA2Q15596 1464 aa6.29□□□□□ -1.4
MCF2-201ENST00000338585 OSCARQ8IYS5 282 aa6.29□□□□□ -1.4
MCF2-201ENST00000338585 HOXD11P31277 338 aaPredicted RBP6.28□□□□□ -1.4
MCF2-201ENST00000338585 SUPT6HQ7KZ85 1726 aaKnown RBP6.28□□□□□ -1.4
MCF2-201ENST00000338585 HRCP23327 699 aa6.28□□□□□ -1.4
MCF2-201ENST00000338585 ITGAEP38570 1179 aa6.28□□□□□ -1.4
MCF2-201ENST00000338585 ATP10BO94823 1461 aa6.28□□□□□ -1.4
MCF2-201ENST00000338585 FAM50AQ14320 339 aaKnown RBP6.27□□□□□ -1.41
MCF2-201ENST00000338585 ARHGEF11O15085 1522 aa6.27□□□□□ -1.41
MCF2-201ENST00000338585 UACAQ9BZF9 1416 aa6.27□□□□□ -1.41
MCF2-201ENST00000338585 MYOM3Q5VTT5 1437 aa6.26□□□□□ -1.41
MCF2-201ENST00000338585 FGD6Q6ZV73 1430 aa6.26□□□□□ -1.41
MCF2-201ENST00000338585 CDK11AQ9UQ88 783 aaPredicted RBP6.26□□□□□ -1.41
MCF2-201ENST00000338585 TROQ12816 1431 aaPredicted RBP6.26□□□□□ -1.41
MCF2-201ENST00000338585 ABCC2Q92887 1545 aa6.25□□□□□ -1.41
MCF2-201ENST00000338585 KIF14Q15058 1648 aa6.25□□□□□ -1.41
MCF2-201ENST00000338585 PLEKHD1A6NEE1 506 aa6.24□□□□□ -1.41
MCF2-201ENST00000338585 PTPN23Q9H3S7 1636 aa6.23□□□□□ -1.41
MCF2-201ENST00000338585 CCER1Q8TC90 406 aaPredicted RBP6.23□□□□□ -1.41
MCF2-201ENST00000338585 UHRF1BP1LA0JNW5 1464 aa6.22□□□□□ -1.41
MCF2-201ENST00000338585 ADCY10Q96PN6 1610 aa6.22□□□□□ -1.41
MCF2-201ENST00000338585 ZNF644Q9H582 1327 aaPredicted RBP6.22□□□□□ -1.41
MCF2-201ENST00000338585 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.22□□□□□ -1.41
MCF2-201ENST00000338585 PTPRKQ15262 1439 aa6.22□□□□□ -1.41
MCF2-201ENST00000338585 ZCCHC11Q5TAX3 1644 aaKnown RBP6.21□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms