RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 GRIN2AQ12879 1464 aa15.91■□□□□ 0.14
HMGB3-201ENST00000325307 CTTNBP2Q8WZ74 1663 aa15.85■□□□□ 0.13
HMGB3-201ENST00000325307 P3H3Q8IVL6 736 aa15.82■□□□□ 0.12
HMGB3-201ENST00000325307 CHD1O14646 1710 aa15.8■□□□□ 0.12
HMGB3-201ENST00000325307 KIAA0586Q9BVV6 1533 aa15.79■□□□□ 0.12
HMGB3-201ENST00000325307 IQGAP2Q13576 1575 aa15.79■□□□□ 0.12
HMGB3-201ENST00000325307 CEP170Q5SW79 1584 aa15.79■□□□□ 0.12
HMGB3-201ENST00000325307 ARHGAP35Q9NRY4 1499 aa15.78■□□□□ 0.12
HMGB3-201ENST00000325307 NUP160Q12769 1436 aa15.78■□□□□ 0.12
HMGB3-201ENST00000325307 ARAP1Q96P48 1450 aa15.74■□□□□ 0.11
HMGB3-201ENST00000325307 FHOD3Q2V2M9 1422 aa15.73■□□□□ 0.11
HMGB3-201ENST00000325307 EFCAB5A4FU69 1503 aa15.73■□□□□ 0.11
HMGB3-201ENST00000325307 JPH4Q96JJ6 628 aa15.72■□□□□ 0.11
HMGB3-201ENST00000325307 VPS8Q8N3P4 1428 aa15.72■□□□□ 0.11
HMGB3-201ENST00000325307 TTBK1Q5TCY1 1321 aaPredicted RBP15.71■□□□□ 0.11
HMGB3-201ENST00000325307 UGGT2Q9NYU1 1516 aa15.69■□□□□ 0.1
HMGB3-201ENST00000325307 APLP2Q06481 763 aa15.68■□□□□ 0.1
HMGB3-201ENST00000325307 ATP1B4Q9UN42 357 aaPredicted RBP15.68■□□□□ 0.1
HMGB3-201ENST00000325307 SAMD9Q5K651 1589 aa15.67■□□□□ 0.1
HMGB3-201ENST00000325307 PPARGC1BQ86YN6 1023 aaKnown RBP15.67■□□□□ 0.1
HMGB3-201ENST00000325307 OSCARQ8IYS5 282 aa15.66■□□□□ 0.1
HMGB3-201ENST00000325307 CARMIL2Q6F5E8 1435 aa15.65■□□□□ 0.1
HMGB3-201ENST00000325307 DISP1Q96F81 1524 aa15.63■□□□□ 0.09
HMGB3-201ENST00000325307 FMN1Q68DA7 1419 aa15.63■□□□□ 0.09
HMGB3-201ENST00000325307 PRG4Q92954 1404 aaPredicted RBP15.63■□□□□ 0.09
HMGB3-201ENST00000325307 KIAA0556O60303 1618 aa15.62■□□□□ 0.09
HMGB3-201ENST00000325307 CLASP1Q7Z460 1538 aa15.6■□□□□ 0.09
HMGB3-201ENST00000325307 PCF11O94913 1555 aaKnown RBP15.56■□□□□ 0.08
HMGB3-201ENST00000325307 CASKIN1Q8WXD9 1431 aa15.55■□□□□ 0.08
HMGB3-201ENST00000325307 SHROOM2Q13796 1616 aa15.55■□□□□ 0.08
HMGB3-201ENST00000325307 FYCO1Q9BQS8 1478 aa15.53■□□□□ 0.08
HMGB3-201ENST00000325307 ARID3CA6NKF2 412 aa15.53■□□□□ 0.08
HMGB3-201ENST00000325307 PTPRGP23470 1445 aa15.52■□□□□ 0.08
HMGB3-201ENST00000325307 ERCC6L2Q5T890 1561 aa15.51■□□□□ 0.07
HMGB3-201ENST00000325307 PELP1Q8IZL8 1130 aaKnown RBP15.5■□□□□ 0.07
HMGB3-201ENST00000325307 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.48■□□□□ 0.07
HMGB3-201ENST00000325307 HNRNPUL2Q1KMD3 747 aaKnown RBP15.48■□□□□ 0.07
HMGB3-201ENST00000325307 PLB1Q6P1J6 1458 aa15.48■□□□□ 0.07
HMGB3-201ENST00000325307 KANK4Q5T7N3 995 aaPredicted RBP15.48■□□□□ 0.07
HMGB3-201ENST00000325307 PCGF6Q9BYE7 350 aa15.47■□□□□ 0.07
HMGB3-201ENST00000325307 HECW1Q76N89 1606 aa15.46■□□□□ 0.07
HMGB3-201ENST00000325307 RAPGEF6Q8TEU7 1601 aa15.45■□□□□ 0.06
HMGB3-201ENST00000325307 TIAM1Q13009 1591 aa15.45■□□□□ 0.06
HMGB3-201ENST00000325307 MAP3K1Q13233 1512 aa15.42■□□□□ 0.06
HMGB3-201ENST00000325307 CCDC18Q5T9S5 1454 aa15.42■□□□□ 0.06
HMGB3-201ENST00000325307 EPRSP07814 1512 aaKnown RBP15.42■□□□□ 0.06
HMGB3-201ENST00000325307 TRIM26Q12899 539 aaPredicted RBP15.42■□□□□ 0.06
HMGB3-201ENST00000325307 NUP153P49790 1475 aaKnown RBP15.42■□□□□ 0.06
HMGB3-201ENST00000325307 MTUS2Q5JR59 1369 aa15.41■□□□□ 0.06
HMGB3-201ENST00000325307 CDK13Q14004 1512 aaKnown RBP15.41■□□□□ 0.06
HMGB3-201ENST00000325307 UACAQ9BZF9 1416 aa15.4■□□□□ 0.06
HMGB3-201ENST00000325307 LRRC9Q6ZRR7 1453 aa15.4■□□□□ 0.06
HMGB3-201ENST00000325307 CFAP43Q8NDM7 1665 aa15.4■□□□□ 0.06
HMGB3-201ENST00000325307 ABCA8O94911 1581 aa15.39■□□□□ 0.05
HMGB3-201ENST00000325307 CDK11AQ9UQ88 783 aaPredicted RBP15.38■□□□□ 0.05
HMGB3-201ENST00000325307 LRRIQ1Q96JM4 1722 aa15.38■□□□□ 0.05
HMGB3-201ENST00000325307 ARHGEF11O15085 1522 aa15.34■□□□□ 0.05
HMGB3-201ENST00000325307 ABCC2Q92887 1545 aa15.33■□□□□ 0.05
HMGB3-201ENST00000325307 ATP10BO94823 1461 aa15.32■□□□□ 0.04
HMGB3-201ENST00000325307 PLEKHD1A6NEE1 506 aa15.32■□□□□ 0.04
HMGB3-201ENST00000325307 MYT1Q01538 1121 aa15.31■□□□□ 0.04
HMGB3-201ENST00000325307 EHBP1L1Q8N3D4 1523 aa15.31■□□□□ 0.04
HMGB3-201ENST00000325307 MAGI3Q5TCQ9 1506 aa15.3■□□□□ 0.04
HMGB3-201ENST00000325307 HRCP23327 699 aa15.3■□□□□ 0.04
HMGB3-201ENST00000325307 CYB5RLQ6IPT4 315 aa15.29■□□□□ 0.04
HMGB3-201ENST00000325307 UHRF1BP1LA0JNW5 1464 aa15.29■□□□□ 0.04
HMGB3-201ENST00000325307 NPM1P06748 294 aaKnown RBP eCLIP15.27■□□□□ 0.03
HMGB3-201ENST00000325307 PHLDB1Q86UU1 1377 aa15.27■□□□□ 0.03
HMGB3-201ENST00000325307 TROQ12816 1431 aaPredicted RBP15.26■□□□□ 0.03
HMGB3-201ENST00000325307 RIMBP3CA6NJZ7 1639 aa15.26■□□□□ 0.03
HMGB3-201ENST00000325307 RIMBP3BA6NNM3 1639 aa15.26■□□□□ 0.03
HMGB3-201ENST00000325307 RIMBP3Q9UFD9 1639 aa15.26■□□□□ 0.03
HMGB3-201ENST00000325307 NCOA2Q15596 1464 aa15.26■□□□□ 0.03
HMGB3-201ENST00000325307 SUPT6HQ7KZ85 1726 aaKnown RBP15.25■□□□□ 0.03
HMGB3-201ENST00000325307 ADCY10Q96PN6 1610 aa15.25■□□□□ 0.03
HMGB3-201ENST00000325307 KDM5BQ9UGL1 1544 aa15.23■□□□□ 0.03
HMGB3-201ENST00000325307 KCNH8Q96L42 1107 aa15.23■□□□□ 0.03
HMGB3-201ENST00000325307 ZCCHC11Q5TAX3 1644 aaKnown RBP15.22■□□□□ 0.03
HMGB3-201ENST00000325307 FAM50AQ14320 339 aaKnown RBP15.22■□□□□ 0.03
HMGB3-201ENST00000325307 CCNB3Q8WWL7 1395 aa15.21■□□□□ 0.03
HMGB3-201ENST00000325307 ITGAEP38570 1179 aa15.19■□□□□ 0.02
HMGB3-201ENST00000325307 MYOM3Q5VTT5 1437 aa15.19■□□□□ 0.02
HMGB3-201ENST00000325307 RRBP1Q9P2E9 1410 aaKnown RBP15.18■□□□□ 0.02
HMGB3-201ENST00000325307 KIF14Q15058 1648 aa15.18■□□□□ 0.02
HMGB3-201ENST00000325307 FGD6Q6ZV73 1430 aa15.17■□□□□ 0.02
HMGB3-201ENST00000325307 CFDP1Q9UEE9 299 aaPredicted RBP15.14■□□□□ 0.01
HMGB3-201ENST00000325307 ASXL2Q76L83 1435 aa15.14■□□□□ 0.01
HMGB3-201ENST00000325307 ZNF777Q9ULD5 760 aaPredicted RBP15.14■□□□□ 0.01
HMGB3-201ENST00000325307 WDR7Q9Y4E6 1490 aa15.13■□□□□ 0.01
HMGB3-201ENST00000325307 ABCC10Q5T3U5 1492 aa15.1■□□□□ 0.01
HMGB3-201ENST00000325307 GPATCH8Q9UKJ3 1502 aaKnown RBP15.1■□□□□ 0.01
HMGB3-201ENST00000325307 MIA2Q96PC5 1412 aa15.1■□□□□ 0.01
HMGB3-201ENST00000325307 PTPN23Q9H3S7 1636 aa15.08■□□□□ 0.01
HMGB3-201ENST00000325307 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.08■□□□□ 07e-7■■□□□ 14.3
HMGB3-201ENST00000325307 ZNF644Q9H582 1327 aaPredicted RBP15.08■□□□□ 0
HMGB3-201ENST00000325307 ITSN2Q9NZM3 1697 aa15.07■□□□□ 0
HMGB3-201ENST00000325307 TTC37Q6PGP7 1564 aa15.07■□□□□ 0
HMGB3-201ENST00000325307 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.06■□□□□ 06e-8■■■■□ 21.9
HMGB3-201ENST00000325307 CDC42BPAQ5VT25 1732 aa15.04■□□□□ -0
HMGB3-201ENST00000325307 ARHGAP5Q13017 1502 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms