RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 NISCHQ9Y2I1 1504 aa22.97■■□□□ 1.27
HMGB3-201ENST00000325307 CCDC180Q9P1Z9 1646 aa20.09■□□□□ 0.81
HMGB3-201ENST00000325307 ABCC9O60706 1549 aa19.31■□□□□ 0.68
HMGB3-201ENST00000325307 DCAF8L2P0C7V8 631 aa19.24■□□□□ 0.67
HMGB3-201ENST00000325307 ZCCHC6Q5VYS8 1495 aaKnown RBP19.24■□□□□ 0.67
HMGB3-201ENST00000325307 DCAF1Q9Y4B6 1507 aa18.95■□□□□ 0.62
HMGB3-201ENST00000325307 NACADO15069 1562 aa18.8■□□□□ 0.6
HMGB3-201ENST00000325307 MYO15BQ96JP2 1530 aa18.79■□□□□ 0.6
HMGB3-201ENST00000325307 SHROOM4Q9ULL8 1493 aa18.73■□□□□ 0.59
HMGB3-201ENST00000325307 RB1CC1Q8TDY2 1594 aa18.71■□□□□ 0.59
HMGB3-201ENST00000325307 SCRIBQ14160 1630 aa18.53■□□□□ 0.56
HMGB3-201ENST00000325307 UNC13AQ9UPW8 1703 aa18.25■□□□□ 0.51
HMGB3-201ENST00000325307 PABPN1Q86U42 306 aaKnown RBP eCLIP18.21■□□□□ 0.51
HMGB3-201ENST00000325307 BICRAQ9NZM4 1560 aa18.1■□□□□ 0.49
HMGB3-201ENST00000325307 SUPT5HO00267 1087 aaKnown RBP17.93■□□□□ 0.46
HMGB3-201ENST00000325307 CECR2Q9BXF3 1484 aa17.9■□□□□ 0.46
HMGB3-201ENST00000325307 BAZ1AQ9NRL2 1556 aaPredicted RBP17.77■□□□□ 0.44
HMGB3-201ENST00000325307 RSF1Q96T23 1441 aaPredicted RBP17.76■□□□□ 0.43
HMGB3-201ENST00000325307 MROH2BQ7Z745 1585 aa17.75■□□□□ 0.43
HMGB3-201ENST00000325307 SMARCA4P51532 1647 aa17.7■□□□□ 0.42
HMGB3-201ENST00000325307 EIF4G1Q04637 1599 aaKnown RBP17.61■□□□□ 0.41
HMGB3-201ENST00000325307 WIZO95785 1651 aa17.59■□□□□ 0.41
HMGB3-201ENST00000325307 ATAD2BQ9ULI0 1458 aa17.49■□□□□ 0.39
HMGB3-201ENST00000325307 SMARCA2P51531 1590 aa17.47■□□□□ 0.39
HMGB3-201ENST00000325307 PEG3Q9GZU2 1588 aa17.45■□□□□ 0.38
HMGB3-201ENST00000325307 CC2D2AQ9P2K1 1620 aa17.41■□□□□ 0.38
HMGB3-201ENST00000325307 BAZ1BQ9UIG0 1483 aaKnown RBP17.41■□□□□ 0.38
HMGB3-201ENST00000325307 TOP2AP11388 1531 aaKnown RBP17.4■□□□□ 0.38
HMGB3-201ENST00000325307 NCAPD3P42695 1498 aa17.36■□□□□ 0.37
HMGB3-201ENST00000325307 HMGXB3Q12766 1538 aa17.3■□□□□ 0.36
HMGB3-201ENST00000325307 CCDC88BA6NC98 1476 aa17.24■□□□□ 0.35
HMGB3-201ENST00000325307 DNAJC5BQ9UF47 199 aa17.21■□□□□ 0.35
HMGB3-201ENST00000325307 CHIC1Q5VXU3 224 aa16.97■□□□□ 0.31
HMGB3-201ENST00000325307 CADPSQ9ULU8 1353 aa16.94■□□□□ 0.3
HMGB3-201ENST00000325307 CFTRP13569 1480 aa16.92■□□□□ 0.3
HMGB3-201ENST00000325307 NESP48681 1621 aa16.86■□□□□ 0.29
HMGB3-201ENST00000325307 TRIM41Q8WV44 630 aa16.86■□□□□ 0.29
HMGB3-201ENST00000325307 ABCC8Q09428 1581 aa16.82■□□□□ 0.28
HMGB3-201ENST00000325307 LAMC3Q9Y6N6 1575 aa16.8■□□□□ 0.28
HMGB3-201ENST00000325307 WRNQ14191 1432 aaPredicted RBP eCLIP16.76■□□□□ 0.27
HMGB3-201ENST00000325307 FANCD2Q9BXW9 1451 aa16.75■□□□□ 0.27
HMGB3-201ENST00000325307 PRDM2Q13029 1718 aa16.75■□□□□ 0.27
HMGB3-201ENST00000325307 PDS5BQ9NTI5 1447 aa16.73■□□□□ 0.27
HMGB3-201ENST00000325307 CEP164Q9UPV0 1460 aa16.68■□□□□ 0.26
HMGB3-201ENST00000325307 SYNJ1O43426 1573 aa16.65■□□□□ 0.26
HMGB3-201ENST00000325307 CUX1P39880 1505 aa16.61■□□□□ 0.25
HMGB3-201ENST00000325307 ERCC6Q03468 1493 aa16.61■□□□□ 0.25
HMGB3-201ENST00000325307 KIF21AQ7Z4S6 1674 aa16.61■□□□□ 0.25
HMGB3-201ENST00000325307 TOP2BQ02880 1626 aa16.59■□□□□ 0.25
HMGB3-201ENST00000325307 FAM9AQ8IZU1 332 aaPredicted RBP16.58■□□□□ 0.25
HMGB3-201ENST00000325307 BIVM-ERCC5R4GMW8 1640 aa16.55■□□□□ 0.24
HMGB3-201ENST00000325307 DNMBPQ6XZF7 1577 aa16.53■□□□□ 0.24
HMGB3-201ENST00000325307 URB2Q14146 1524 aaKnown RBP16.53■□□□□ 0.24
HMGB3-201ENST00000325307 TOPBP1Q92547 1522 aa16.53■□□□□ 0.24
HMGB3-201ENST00000325307 MRC2Q9UBG0 1479 aa16.51■□□□□ 0.23
HMGB3-201ENST00000325307 FGD5Q6ZNL6 1462 aa16.49■□□□□ 0.23
HMGB3-201ENST00000325307 SOGA1O94964 1423 aa16.47■□□□□ 0.23
HMGB3-201ENST00000325307 POLA1P09884 1462 aaPredicted RBP16.43■□□□□ 0.22
HMGB3-201ENST00000325307 RUSC2Q8N2Y8 1516 aa16.41■□□□□ 0.22
HMGB3-201ENST00000325307 EHMT2Q96KQ7 1210 aa16.4■□□□□ 0.22
HMGB3-201ENST00000325307 RAD54L2Q9Y4B4 1467 aa16.4■□□□□ 0.22
HMGB3-201ENST00000325307 WDR62O43379 1518 aa16.39■□□□□ 0.21
HMGB3-201ENST00000325307 EEA1Q15075 1411 aa16.38■□□□□ 0.21
HMGB3-201ENST00000325307 THOC2Q8NI27 1593 aaKnown RBP16.38■□□□□ 0.21
HMGB3-201ENST00000325307 CUX2O14529 1486 aa16.37■□□□□ 0.21
HMGB3-201ENST00000325307 CSRNP3Q8WYN3 585 aa16.36■□□□□ 0.21
HMGB3-201ENST00000325307 KIF27Q86VH2 1401 aa16.36■□□□□ 0.21
HMGB3-201ENST00000325307 LOC105371045A0A1W2PR82 267 aa16.36■□□□□ 0.21
HMGB3-201ENST00000325307 ABCA10Q8WWZ4 1543 aa16.31■□□□□ 0.2
HMGB3-201ENST00000325307 TDRD9Q8NDG6 1382 aaKnown RBP16.29■□□□□ 0.2
HMGB3-201ENST00000325307 IFT140Q96RY7 1462 aa16.27■□□□□ 0.2
HMGB3-201ENST00000325307 TARBP1Q13395 1621 aaKnown RBP16.25■□□□□ 0.19
HMGB3-201ENST00000325307 WDR97A6NE52 1622 aa16.22■□□□□ 0.19
HMGB3-201ENST00000325307 GAPVD1Q14C86 1478 aa16.22■□□□□ 0.19
HMGB3-201ENST00000325307 IGF1RP08069 1367 aa16.21■□□□□ 0.19
HMGB3-201ENST00000325307 AQRO60306 1485 aaKnown RBP eCLIP16.21■□□□□ 0.193e-6■■■■□ 24.7
HMGB3-201ENST00000325307 UBTFP17480 764 aaKnown RBP16.2■□□□□ 0.18
HMGB3-201ENST00000325307 ZNF608Q9ULD9 1512 aaPredicted RBP16.2■□□□□ 0.18
HMGB3-201ENST00000325307 ABCA5Q8WWZ7 1642 aa16.17■□□□□ 0.18
HMGB3-201ENST00000325307 GOLGA3Q08378 1498 aa16.16■□□□□ 0.18
HMGB3-201ENST00000325307 CARMIL1Q5VZK9 1371 aa16.16■□□□□ 0.18
HMGB3-201ENST00000325307 PRXQ9BXM0 1461 aa16.14■□□□□ 0.17
HMGB3-201ENST00000325307 RAPGEF2Q9Y4G8 1499 aa16.14■□□□□ 0.17
HMGB3-201ENST00000325307 KIF21BO75037 1637 aa16.14■□□□□ 0.17
HMGB3-201ENST00000325307 GRIN2BQ13224 1484 aa16.12■□□□□ 0.17
HMGB3-201ENST00000325307 ERICH3Q5RHP9 1530 aa16.12■□□□□ 0.17
HMGB3-201ENST00000325307 EIF4G3O43432 1585 aaKnown RBP16.11■□□□□ 0.17
HMGB3-201ENST00000325307 PBRM1Q86U86 1689 aa16.08■□□□□ 0.16
HMGB3-201ENST00000325307 CUL7Q14999 1698 aa16.07■□□□□ 0.16
HMGB3-201ENST00000325307 TNIKQ9UKE5 1360 aa16.06■□□□□ 0.16
HMGB3-201ENST00000325307 RANGAP1P46060 587 aaPredicted RBP16.06■□□□□ 0.16
HMGB3-201ENST00000325307 SNAPC4Q5SXM2 1469 aa16.04■□□□□ 0.16
HMGB3-201ENST00000325307 FHAD1B1AJZ9 1412 aa16.03■□□□□ 0.16
HMGB3-201ENST00000325307 FBLN2P98095 1184 aa16.02■□□□□ 0.16
HMGB3-201ENST00000325307 ADAMTS12P58397 1594 aa16■□□□□ 0.15
HMGB3-201ENST00000325307 CHMP7Q8WUX9 453 aaPredicted RBP16■□□□□ 0.15
HMGB3-201ENST00000325307 MAGI1Q96QZ7 1491 aaPredicted RBP15.99■□□□□ 0.15
HMGB3-201ENST00000325307 CEP162Q5TB80 1403 aa15.98■□□□□ 0.15
HMGB3-201ENST00000325307 SYNJ2O15056 1496 aa15.94■□□□□ 0.14
HMGB3-201ENST00000325307 CLIP1P30622 1438 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms