RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 CLASP1Q7Z460 1538 aa15.82■□□□□ 0.12
HMGN1-201ENST00000288344 FHAD1B1AJZ9 1412 aa15.81■□□□□ 0.12
HMGN1-201ENST00000288344 ADAMTS12P58397 1594 aa15.81■□□□□ 0.12
HMGN1-201ENST00000288344 GRIN2AQ12879 1464 aa15.79■□□□□ 0.12
HMGN1-201ENST00000288344 NUP160Q12769 1436 aa15.78■□□□□ 0.12
HMGN1-201ENST00000288344 KIF27Q86VH2 1401 aa15.78■□□□□ 0.12
HMGN1-201ENST00000288344 ARHGEF11O15085 1522 aa15.75■□□□□ 0.11
HMGN1-201ENST00000288344 RIMBP3CA6NJZ7 1639 aa15.74■□□□□ 0.11
HMGN1-201ENST00000288344 RIMBP3BA6NNM3 1639 aa15.74■□□□□ 0.11
HMGN1-201ENST00000288344 RIMBP3Q9UFD9 1639 aa15.74■□□□□ 0.11
HMGN1-201ENST00000288344 RUSC2Q8N2Y8 1516 aa15.74■□□□□ 0.11
HMGN1-201ENST00000288344 NPM3O75607 178 aaKnown RBP15.73■□□□□ 0.11
HMGN1-201ENST00000288344 CEP170Q5SW79 1584 aa15.72■□□□□ 0.11
HMGN1-201ENST00000288344 SLC4A1APQ9BWU0 796 aaKnown RBP15.7■□□□□ 0.1
HMGN1-201ENST00000288344 TRIM41Q8WV44 630 aa15.69■□□□□ 0.1
HMGN1-201ENST00000288344 CARMIL1Q5VZK9 1371 aa15.67■□□□□ 0.1
HMGN1-201ENST00000288344 RNF216Q9NWF9 866 aaPredicted RBP15.65■□□□□ 0.1
HMGN1-201ENST00000288344 ARAP1Q96P48 1450 aa15.65■□□□□ 0.1
HMGN1-201ENST00000288344 CUL7Q14999 1698 aa15.65■□□□□ 0.1
HMGN1-201ENST00000288344 SHROOM2Q13796 1616 aa15.64■□□□□ 0.09
HMGN1-201ENST00000288344 HOXD11P31277 338 aaPredicted RBP15.62■□□□□ 0.09
HMGN1-201ENST00000288344 ERCC6L2Q5T890 1561 aa15.6■□□□□ 0.09
HMGN1-201ENST00000288344 CYB5RLQ6IPT4 315 aa15.6■□□□□ 0.09
HMGN1-201ENST00000288344 JPH4Q96JJ6 628 aa15.6■□□□□ 0.09
HMGN1-201ENST00000288344 KIAA0586Q9BVV6 1533 aa15.59■□□□□ 0.09
HMGN1-201ENST00000288344 PRXQ9BXM0 1461 aa15.58■□□□□ 0.08
HMGN1-201ENST00000288344 CSRNP3Q8WYN3 585 aa15.55■□□□□ 0.08
HMGN1-201ENST00000288344 RAPGEF2Q9Y4G8 1499 aa15.55■□□□□ 0.08
HMGN1-201ENST00000288344 PRG4Q92954 1404 aaPredicted RBP15.51■□□□□ 0.07
HMGN1-201ENST00000288344 EEA1Q15075 1411 aa15.46■□□□□ 0.07
HMGN1-201ENST00000288344 DCAF8L1A6NGE4 600 aa15.45■□□□□ 0.06
HMGN1-201ENST00000288344 IQGAP2Q13576 1575 aa15.42■□□□□ 0.06
HMGN1-201ENST00000288344 DISP1Q96F81 1524 aa15.42■□□□□ 0.06
HMGN1-201ENST00000288344 UGGT2Q9NYU1 1516 aa15.42■□□□□ 0.06
HMGN1-201ENST00000288344 TNIKQ9UKE5 1360 aa15.34■□□□□ 0.05
HMGN1-201ENST00000288344 CTTNBP2Q8WZ74 1663 aa15.34■□□□□ 0.05
HMGN1-201ENST00000288344 FAM9AQ8IZU1 332 aaPredicted RBP15.33■□□□□ 0.04
HMGN1-201ENST00000288344 PTPRGP23470 1445 aa15.33■□□□□ 0.04
HMGN1-201ENST00000288344 CARMIL2Q6F5E8 1435 aa15.33■□□□□ 0.04
HMGN1-201ENST00000288344 KIF21BO75037 1637 aa15.31■□□□□ 0.04
HMGN1-201ENST00000288344 ADCY10Q96PN6 1610 aa15.3■□□□□ 0.04
HMGN1-201ENST00000288344 KIAA0556O60303 1618 aa15.29■□□□□ 0.04
HMGN1-201ENST00000288344 UHRF1BP1LA0JNW5 1464 aa15.27■□□□□ 0.04
HMGN1-201ENST00000288344 ZBTB22O15209 634 aa15.25■□□□□ 0.03
HMGN1-201ENST00000288344 UACAQ9BZF9 1416 aa15.24■□□□□ 0.03
HMGN1-201ENST00000288344 GOLGA3Q08378 1498 aa15.23■□□□□ 0.03
HMGN1-201ENST00000288344 SAMD9Q5K651 1589 aa15.23■□□□□ 0.03
HMGN1-201ENST00000288344 MAPKBP1O60336 1514 aa15.21■□□□□ 0.03
HMGN1-201ENST00000288344 ABCC2Q92887 1545 aa15.21■□□□□ 0.02
HMGN1-201ENST00000288344 KDM5BQ9UGL1 1544 aa15.21■□□□□ 0.02
HMGN1-201ENST00000288344 ABCA8O94911 1581 aa15.19■□□□□ 0.02
HMGN1-201ENST00000288344 PLB1Q6P1J6 1458 aa15.18■□□□□ 0.02
HMGN1-201ENST00000288344 TRHP20396 242 aaPredicted RBP15.17■□□□□ 0.02
HMGN1-201ENST00000288344 ABCC10Q5T3U5 1492 aa15.16■□□□□ 0.02
HMGN1-201ENST00000288344 KIF13AQ9H1H9 1805 aa15.15■□□□□ 0.02
HMGN1-201ENST00000288344 P3H3Q8IVL6 736 aa15.15■□□□□ 0.02
HMGN1-201ENST00000288344 TTBK1Q5TCY1 1321 aaPredicted RBP15.14■□□□□ 0.01
HMGN1-201ENST00000288344 NPM1P06748 294 aaKnown RBP eCLIP15.14■□□□□ 0.01
HMGN1-201ENST00000288344 UBTFP17480 764 aaKnown RBP15.11■□□□□ 0.01
HMGN1-201ENST00000288344 DIP2BQ9P265 1576 aa15.1■□□□□ 0.01
HMGN1-201ENST00000288344 ASXL2Q76L83 1435 aa15.1■□□□□ 0.01
HMGN1-201ENST00000288344 ARHGAP35Q9NRY4 1499 aa15.1■□□□□ 0.01
HMGN1-201ENST00000288344 EFCAB5A4FU69 1503 aa15.09■□□□□ 0.01
HMGN1-201ENST00000288344 ATP10BO94823 1461 aa15.09■□□□□ 0.01
HMGN1-201ENST00000288344 ZCCHC11Q5TAX3 1644 aaKnown RBP15.09■□□□□ 0.01
HMGN1-201ENST00000288344 FHOD3Q2V2M9 1422 aa15.08■□□□□ 0.01
HMGN1-201ENST00000288344 FAM69CQ0P6D2 419 aa15.07■□□□□ 0
HMGN1-201ENST00000288344 GLI2P10070 1586 aa15.06■□□□□ 0
HMGN1-201ENST00000288344 NUP153P49790 1475 aaKnown RBP15.05■□□□□ -0
HMGN1-201ENST00000288344 EPRSP07814 1512 aaKnown RBP15.04■□□□□ -0
HMGN1-201ENST00000288344 RANGAP1P46060 587 aaPredicted RBP15.03■□□□□ -0
HMGN1-201ENST00000288344 RAPGEF6Q8TEU7 1601 aa15.02■□□□□ -0
HMGN1-201ENST00000288344 WDR7Q9Y4E6 1490 aa15.01□□□□□ -0.01
HMGN1-201ENST00000288344 PPRC1Q5VV67 1664 aaKnown RBP14.99□□□□□ -0.01
HMGN1-201ENST00000288344 MAP3K4Q9Y6R4 1608 aa14.96□□□□□ -0.01
HMGN1-201ENST00000288344 LOC105371045A0A1W2PR82 267 aa14.96□□□□□ -0.01
HMGN1-201ENST00000288344 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.96□□□□□ -0.011e-6■■□□□ 12.8
HMGN1-201ENST00000288344 FMN1Q68DA7 1419 aa14.96□□□□□ -0.02
HMGN1-201ENST00000288344 FOXD4L1Q9NU39 408 aa14.93□□□□□ -0.02
HMGN1-201ENST00000288344 ARID3CA6NKF2 412 aa14.92□□□□□ -0.02
HMGN1-201ENST00000288344 COL17A1Q9UMD9 1497 aaPredicted RBP14.91□□□□□ -0.02
HMGN1-201ENST00000288344 CLIP1P30622 1438 aa14.91□□□□□ -0.02
HMGN1-201ENST00000288344 KCNH8Q96L42 1107 aa14.91□□□□□ -0.02
HMGN1-201ENST00000288344 MAGI3Q5TCQ9 1506 aa14.9□□□□□ -0.02
HMGN1-201ENST00000288344 TSPOAP1O95153 1857 aa14.9□□□□□ -0.02
HMGN1-201ENST00000288344 CASKIN1Q8WXD9 1431 aa14.89□□□□□ -0.03
HMGN1-201ENST00000288344 LRRIQ1Q96JM4 1722 aa14.89□□□□□ -0.03
HMGN1-201ENST00000288344 CD109Q6YHK3 1445 aa14.88□□□□□ -0.03
HMGN1-201ENST00000288344 CDK13Q14004 1512 aaKnown RBP14.88□□□□□ -0.03
HMGN1-201ENST00000288344 ABCA9Q8IUA7 1624 aa14.87□□□□□ -0.03
HMGN1-201ENST00000288344 CFAP43Q8NDM7 1665 aa14.87□□□□□ -0.03
HMGN1-201ENST00000288344 PLEKHD1A6NEE1 506 aa14.87□□□□□ -0.03
HMGN1-201ENST00000288344 CEP162Q5TB80 1403 aa14.85□□□□□ -0.03
HMGN1-201ENST00000288344 RNF39Q9H2S5 420 aa14.85□□□□□ -0.03
HMGN1-201ENST00000288344 HECW1Q76N89 1606 aa14.84□□□□□ -0.03
HMGN1-201ENST00000288344 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.82□□□□□ -0.043e-6■□□□□ 8.1
HMGN1-201ENST00000288344 PCF11O94913 1555 aaKnown RBP14.82□□□□□ -0.04
HMGN1-201ENST00000288344 TEX14Q8IWB6 1497 aa14.81□□□□□ -0.04
HMGN1-201ENST00000288344 FYCO1Q9BQS8 1478 aa14.81□□□□□ -0.04
HMGN1-201ENST00000288344 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms