RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 AEBP2Q6ZN18 517 aaPredicted RBP23.65■■□□□ 1.38
HMGN1-201ENST00000288344 CHIC1Q5VXU3 224 aa22.93■■□□□ 1.26
HMGN1-201ENST00000288344 NISCHQ9Y2I1 1504 aa22.56■■□□□ 1.2
HMGN1-201ENST00000288344 SENP3Q9H4L4 574 aaPredicted RBP20.2■□□□□ 0.82
HMGN1-201ENST00000288344 PHF23Q9BUL5 403 aaPredicted RBP20.09■□□□□ 0.81
HMGN1-201ENST00000288344 CCDC180Q9P1Z9 1646 aa19.99■□□□□ 0.79
HMGN1-201ENST00000288344 ABCC9O60706 1549 aa19.56■□□□□ 0.72
HMGN1-201ENST00000288344 NACADO15069 1562 aa18.83■□□□□ 0.6
HMGN1-201ENST00000288344 MYO15BQ96JP2 1530 aa18.8■□□□□ 0.6
HMGN1-201ENST00000288344 RB1CC1Q8TDY2 1594 aa18.8■□□□□ 0.6
HMGN1-201ENST00000288344 ZCCHC6Q5VYS8 1495 aaKnown RBP18.77■□□□□ 0.6
HMGN1-201ENST00000288344 FOXD1Q16676 465 aa18.72■□□□□ 0.59
HMGN1-201ENST00000288344 DCAF1Q9Y4B6 1507 aa18.71■□□□□ 0.58
HMGN1-201ENST00000288344 DCAF8L2P0C7V8 631 aa18.68■□□□□ 0.58
HMGN1-201ENST00000288344 PLPPR3Q6T4P5 718 aa18.55■□□□□ 0.56
HMGN1-201ENST00000288344 UNC13AQ9UPW8 1703 aa18.44■□□□□ 0.54
HMGN1-201ENST00000288344 BICRAQ9NZM4 1560 aa18.38■□□□□ 0.53
HMGN1-201ENST00000288344 PABPN1Q86U42 306 aaKnown RBP eCLIP18.31■□□□□ 0.52
HMGN1-201ENST00000288344 DNAJC5BQ9UF47 199 aa18.18■□□□□ 0.5
HMGN1-201ENST00000288344 SCRIBQ14160 1630 aa18.17■□□□□ 0.5
HMGN1-201ENST00000288344 SHROOM4Q9ULL8 1493 aa18.09■□□□□ 0.49
HMGN1-201ENST00000288344 ADRA2BP18089 450 aa17.81■□□□□ 0.44
HMGN1-201ENST00000288344 PPP6R1Q9UPN7 881 aa17.8■□□□□ 0.44
HMGN1-201ENST00000288344 EIF4G1Q04637 1599 aaKnown RBP17.8■□□□□ 0.44
HMGN1-201ENST00000288344 CC2D2AQ9P2K1 1620 aa17.72■□□□□ 0.43
HMGN1-201ENST00000288344 PIAS4Q8N2W9 510 aaPredicted RBP17.65■□□□□ 0.42
HMGN1-201ENST00000288344 CECR2Q9BXF3 1484 aa17.6■□□□□ 0.41
HMGN1-201ENST00000288344 SMARCA4P51532 1647 aa17.46■□□□□ 0.38
HMGN1-201ENST00000288344 NCAPD3P42695 1498 aa17.45■□□□□ 0.38
HMGN1-201ENST00000288344 ATAD2BQ9ULI0 1458 aa17.43■□□□□ 0.38
HMGN1-201ENST00000288344 BAZ1AQ9NRL2 1556 aaPredicted RBP17.42■□□□□ 0.38
HMGN1-201ENST00000288344 MSH5O43196 834 aa17.42■□□□□ 0.38
HMGN1-201ENST00000288344 MROH2BQ7Z745 1585 aa17.39■□□□□ 0.37
HMGN1-201ENST00000288344 PEG3Q9GZU2 1588 aa17.37■□□□□ 0.37
HMGN1-201ENST00000288344 SMARCA2P51531 1590 aa17.32■□□□□ 0.36
HMGN1-201ENST00000288344 HMGXB3Q12766 1538 aa17.28■□□□□ 0.36
HMGN1-201ENST00000288344 RSF1Q96T23 1441 aaPredicted RBP17.21■□□□□ 0.35
HMGN1-201ENST00000288344 BAZ1BQ9UIG0 1483 aaKnown RBP17.17■□□□□ 0.34
HMGN1-201ENST00000288344 WIZO95785 1651 aa17.15■□□□□ 0.34
HMGN1-201ENST00000288344 NESP48681 1621 aa16.97■□□□□ 0.31
HMGN1-201ENST00000288344 TOP2AP11388 1531 aaKnown RBP16.95■□□□□ 0.3
HMGN1-201ENST00000288344 CADPSQ9ULU8 1353 aa16.9■□□□□ 0.3
HMGN1-201ENST00000288344 LAMC3Q9Y6N6 1575 aa16.9■□□□□ 0.3
HMGN1-201ENST00000288344 CFTRP13569 1480 aa16.82■□□□□ 0.28
HMGN1-201ENST00000288344 CCDC88BA6NC98 1476 aa16.81■□□□□ 0.28
HMGN1-201ENST00000288344 POTEDQ86YR6 584 aa16.78■□□□□ 0.28
HMGN1-201ENST00000288344 PDS5BQ9NTI5 1447 aa16.76■□□□□ 0.27
HMGN1-201ENST00000288344 ERCC6Q03468 1493 aa16.76■□□□□ 0.27
HMGN1-201ENST00000288344 KIF21AQ7Z4S6 1674 aa16.72■□□□□ 0.27
HMGN1-201ENST00000288344 CUX2O14529 1486 aa16.7■□□□□ 0.26
HMGN1-201ENST00000288344 THOC2Q8NI27 1593 aaKnown RBP16.7■□□□□ 0.26
HMGN1-201ENST00000288344 FANCD2Q9BXW9 1451 aa16.64■□□□□ 0.26
HMGN1-201ENST00000288344 SUPT5HO00267 1087 aaKnown RBP16.6■□□□□ 0.25
HMGN1-201ENST00000288344 MRC2Q9UBG0 1479 aa16.59■□□□□ 0.25
HMGN1-201ENST00000288344 CEP164Q9UPV0 1460 aa16.59■□□□□ 0.25
HMGN1-201ENST00000288344 WDR62O43379 1518 aa16.58■□□□□ 0.24
HMGN1-201ENST00000288344 PRDM2Q13029 1718 aa16.56■□□□□ 0.24
HMGN1-201ENST00000288344 URB2Q14146 1524 aaKnown RBP16.53■□□□□ 0.24
HMGN1-201ENST00000288344 KCNA4P22459 653 aa16.48■□□□□ 0.23
HMGN1-201ENST00000288344 TOPBP1Q92547 1522 aa16.4■□□□□ 0.22
HMGN1-201ENST00000288344 ABCC8Q09428 1581 aa16.38■□□□□ 0.21
HMGN1-201ENST00000288344 SCAF1Q9H7N4 1312 aaKnown RBP16.37■□□□□ 0.21
HMGN1-201ENST00000288344 DNMBPQ6XZF7 1577 aa16.35■□□□□ 0.21
HMGN1-201ENST00000288344 DNAJC5Q9H3Z4 198 aa16.31■□□□□ 0.2
HMGN1-201ENST00000288344 PPP4R3CPQ6ZMV5 832 aa16.3■□□□□ 0.2
HMGN1-201ENST00000288344 CUX1P39880 1505 aa16.29■□□□□ 0.2
HMGN1-201ENST00000288344 IFT140Q96RY7 1462 aa16.28■□□□□ 0.2
HMGN1-201ENST00000288344 POLA1P09884 1462 aaPredicted RBP16.27■□□□□ 0.2
HMGN1-201ENST00000288344 TARBP1Q13395 1621 aaKnown RBP16.26■□□□□ 0.19
HMGN1-201ENST00000288344 ZNF608Q9ULD9 1512 aaPredicted RBP16.26■□□□□ 0.19
HMGN1-201ENST00000288344 MAPK8IP2Q13387 824 aaPredicted RBP16.21■□□□□ 0.19
HMGN1-201ENST00000288344 FGD5Q6ZNL6 1462 aa16.19■□□□□ 0.18
HMGN1-201ENST00000288344 RAD54L2Q9Y4B4 1467 aa16.19■□□□□ 0.18
HMGN1-201ENST00000288344 SOGA1O94964 1423 aa16.19■□□□□ 0.18
HMGN1-201ENST00000288344 AQRO60306 1485 aaKnown RBP eCLIP16.15■□□□□ 0.182e-11■■■■■ 27.4
HMGN1-201ENST00000288344 WRNQ14191 1432 aaPredicted RBP eCLIP16.13■□□□□ 0.17
HMGN1-201ENST00000288344 TOP2BQ02880 1626 aa16.12■□□□□ 0.17
HMGN1-201ENST00000288344 BIVM-ERCC5R4GMW8 1640 aa16.12■□□□□ 0.17
HMGN1-201ENST00000288344 SYNJ1O43426 1573 aa16.12■□□□□ 0.17
HMGN1-201ENST00000288344 EIF4G3O43432 1585 aaKnown RBP16.11■□□□□ 0.17
HMGN1-201ENST00000288344 TDRD9Q8NDG6 1382 aaKnown RBP16.11■□□□□ 0.17
HMGN1-201ENST00000288344 ABCA10Q8WWZ4 1543 aa16.08■□□□□ 0.17
HMGN1-201ENST00000288344 WDR97A6NE52 1622 aa16.08■□□□□ 0.16
HMGN1-201ENST00000288344 DMRT2Q9Y5R5 561 aa16.06■□□□□ 0.16
HMGN1-201ENST00000288344 OSCARQ8IYS5 282 aa16.02■□□□□ 0.16
HMGN1-201ENST00000288344 ABCA5Q8WWZ7 1642 aa15.99■□□□□ 0.15
HMGN1-201ENST00000288344 GAPVD1Q14C86 1478 aa15.99■□□□□ 0.15
HMGN1-201ENST00000288344 GRIN2BQ13224 1484 aa15.98■□□□□ 0.15
HMGN1-201ENST00000288344 SNAPC4Q5SXM2 1469 aa15.94■□□□□ 0.14
HMGN1-201ENST00000288344 MAGI1Q96QZ7 1491 aaPredicted RBP15.94■□□□□ 0.14
HMGN1-201ENST00000288344 CNKSR2Q8WXI2 1034 aa15.92■□□□□ 0.14
HMGN1-201ENST00000288344 CHD1O14646 1710 aa15.9■□□□□ 0.14
HMGN1-201ENST00000288344 PBRM1Q86U86 1689 aa15.89■□□□□ 0.14
HMGN1-201ENST00000288344 SYNJ2O15056 1496 aa15.89■□□□□ 0.13
HMGN1-201ENST00000288344 EHMT2Q96KQ7 1210 aa15.87■□□□□ 0.13
HMGN1-201ENST00000288344 NCBP3Q53F19 620 aaKnown RBP15.86■□□□□ 0.13
HMGN1-201ENST00000288344 ERICH3Q5RHP9 1530 aa15.86■□□□□ 0.13
HMGN1-201ENST00000288344 IGF1RP08069 1367 aa15.85■□□□□ 0.13
HMGN1-201ENST00000288344 CHMP7Q8WUX9 453 aaPredicted RBP15.84■□□□□ 0.13
HMGN1-201ENST00000288344 FBLN2P98095 1184 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms