RNA–Protein interactions for RNA: ENST00000261674.8

SFSWAP-201, Transcript of splicing factor SWAP, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,246 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-201ENST00000261674 CARMIL1Q5VZK9 1371 aa21.32■■□□□ 1
SFSWAP-201ENST00000261674 ITGAEP38570 1179 aa21.32■■□□□ 1
SFSWAP-201ENST00000261674 VPS8Q8N3P4 1428 aa21.25■□□□□ 0.99
SFSWAP-201ENST00000261674 ARID3CA6NKF2 412 aa21.23■□□□□ 0.99
SFSWAP-201ENST00000261674 GAPVD1Q14C86 1478 aa21.21■□□□□ 0.99
SFSWAP-201ENST00000261674 KANK4Q5T7N3 995 aaPredicted RBP21.19■□□□□ 0.98
SFSWAP-201ENST00000261674 CHMP7Q8WUX9 453 aaPredicted RBP21.18■□□□□ 0.98
SFSWAP-201ENST00000261674 ABCA10Q8WWZ4 1543 aa21.17■□□□□ 0.98
SFSWAP-201ENST00000261674 PRXQ9BXM0 1461 aa21.14■□□□□ 0.98
SFSWAP-201ENST00000261674 KIF21BO75037 1637 aa21.08■□□□□ 0.97
SFSWAP-201ENST00000261674 WDR62O43379 1518 aa21.07■□□□□ 0.96
SFSWAP-201ENST00000261674 THOC2Q8NI27 1593 aaKnown RBP21.04■□□□□ 0.96
SFSWAP-201ENST00000261674 IFT140Q96RY7 1462 aa21.03■□□□□ 0.96
SFSWAP-201ENST00000261674 TARBP1Q13395 1621 aaKnown RBP21.03■□□□□ 0.96
SFSWAP-201ENST00000261674 SNAPC4Q5SXM2 1469 aa21■□□□□ 0.95
SFSWAP-201ENST00000261674 DHX57Q6P158 1386 aaKnown RBP20.99■□□□□ 0.95
SFSWAP-201ENST00000261674 GRIN2BQ13224 1484 aa20.95■□□□□ 0.94
SFSWAP-201ENST00000261674 FHOD3Q2V2M9 1422 aa20.93■□□□□ 0.94
SFSWAP-201ENST00000261674 EIF4G3O43432 1585 aaKnown RBP20.9■□□□□ 0.94
SFSWAP-201ENST00000261674 ABCA5Q8WWZ7 1642 aa20.89■□□□□ 0.94
SFSWAP-201ENST00000261674 FAM50AQ14320 339 aaKnown RBP20.89■□□□□ 0.94
SFSWAP-201ENST00000261674 ARAP1Q96P48 1450 aa20.89■□□□□ 0.93
SFSWAP-201ENST00000261674 ERICH3Q5RHP9 1530 aa20.87■□□□□ 0.93
SFSWAP-201ENST00000261674 FHAD1B1AJZ9 1412 aa20.86■□□□□ 0.93
SFSWAP-201ENST00000261674 WDR97A6NE52 1622 aa20.85■□□□□ 0.93
SFSWAP-201ENST00000261674 ARHGAP35Q9NRY4 1499 aa20.85■□□□□ 0.93
SFSWAP-201ENST00000261674 CLSPNQ9HAW4 1339 aa20.84■□□□□ 0.93
SFSWAP-201ENST00000261674 KCNH8Q96L42 1107 aa20.83■□□□□ 0.93
SFSWAP-201ENST00000261674 CCNB3Q8WWL7 1395 aa20.83■□□□□ 0.93
SFSWAP-201ENST00000261674 HIRIP3Q9BW71 556 aaPredicted RBP20.8■□□□□ 0.92
SFSWAP-201ENST00000261674 JPH4Q96JJ6 628 aa20.79■□□□□ 0.92
SFSWAP-201ENST00000261674 SIN3AQ96ST3 1273 aa20.79■□□□□ 0.92
SFSWAP-201ENST00000261674 PBRM1Q86U86 1689 aa20.78■□□□□ 0.92
SFSWAP-201ENST00000261674 SUPT16HQ9Y5B9 1047 aaKnown RBP20.78■□□□□ 0.92
SFSWAP-201ENST00000261674 DDX10Q13206 875 aaKnown RBP20.77■□□□□ 0.92
SFSWAP-201ENST00000261674 BCANQ96GW7 911 aa20.76■□□□□ 0.91
SFSWAP-201ENST00000261674 RAB3GAP2Q9H2M9 1393 aa20.73■□□□□ 0.91
SFSWAP-201ENST00000261674 GRIN2AQ12879 1464 aa20.72■□□□□ 0.91
SFSWAP-201ENST00000261674 CUL7Q14999 1698 aa20.72■□□□□ 0.91
SFSWAP-201ENST00000261674 ADAMTS12P58397 1594 aa20.71■□□□□ 0.91
SFSWAP-201ENST00000261674 RRBP1Q9P2E9 1410 aaKnown RBP20.69■□□□□ 0.9
SFSWAP-201ENST00000261674 SYNJ2O15056 1496 aa20.68■□□□□ 0.9
SFSWAP-201ENST00000261674 MYT1Q01538 1121 aa20.65■□□□□ 0.9
SFSWAP-201ENST00000261674 MAGI1Q96QZ7 1491 aaPredicted RBP20.63■□□□□ 0.89
SFSWAP-201ENST00000261674 CEP170Q5SW79 1584 aa20.58■□□□□ 0.88
SFSWAP-201ENST00000261674 SETD5Q9C0A6 1442 aa20.56■□□□□ 0.88
SFSWAP-201ENST00000261674 PHLDB1Q86UU1 1377 aa20.56■□□□□ 0.88
SFSWAP-201ENST00000261674 TRIM52Q96A61 297 aa20.56■□□□□ 0.88
SFSWAP-201ENST00000261674 IQGAP2Q13576 1575 aa20.56■□□□□ 0.88
SFSWAP-201ENST00000261674 FKBP8Q14318 412 aa20.55■□□□□ 0.88
SFSWAP-201ENST00000261674 KIAA0586Q9BVV6 1533 aa20.55■□□□□ 0.88
SFSWAP-201ENST00000261674 PRG4Q92954 1404 aaPredicted RBP20.54■□□□□ 0.88
SFSWAP-201ENST00000261674 CTTNBP2Q8WZ74 1663 aa20.52■□□□□ 0.88
SFSWAP-201ENST00000261674 OSCARQ8IYS5 282 aa20.51■□□□□ 0.87
SFSWAP-201ENST00000261674 MTUS2Q5JR59 1369 aa20.49■□□□□ 0.87
SFSWAP-201ENST00000261674 TSHZ2Q9NRE2 1034 aa20.48■□□□□ 0.87
SFSWAP-201ENST00000261674 PLB1Q6P1J6 1458 aa20.47■□□□□ 0.87
SFSWAP-201ENST00000261674 PCF11O94913 1555 aaKnown RBP20.47■□□□□ 0.87
SFSWAP-201ENST00000261674 CHD1O14646 1710 aa20.46■□□□□ 0.87
SFSWAP-201ENST00000261674 FMN1Q68DA7 1419 aa20.46■□□□□ 0.87
SFSWAP-201ENST00000261674 ZNF777Q9ULD5 760 aaPredicted RBP20.45■□□□□ 0.86
SFSWAP-201ENST00000261674 ANP32CO43423 234 aa20.45■□□□□ 0.86
SFSWAP-201ENST00000261674 DISP1Q96F81 1524 aa20.45■□□□□ 0.86
SFSWAP-201ENST00000261674 LRRC9Q6ZRR7 1453 aa20.45■□□□□ 0.86
SFSWAP-201ENST00000261674 NEFLP07196 543 aa20.44■□□□□ 0.86
SFSWAP-201ENST00000261674 NUP160Q12769 1436 aa20.44■□□□□ 0.86
SFSWAP-201ENST00000261674 MAPKBP1O60336 1514 aa20.43■□□□□ 0.86
SFSWAP-201ENST00000261674 ERCC6L2Q5T890 1561 aa20.42■□□□□ 0.86
SFSWAP-201ENST00000261674 CARMIL2Q6F5E8 1435 aa20.42■□□□□ 0.86
SFSWAP-201ENST00000261674 CDK13Q14004 1512 aaKnown RBP20.42■□□□□ 0.86
SFSWAP-201ENST00000261674 TIAM1Q13009 1591 aa20.41■□□□□ 0.86
SFSWAP-201ENST00000261674 PTPRGP23470 1445 aa20.41■□□□□ 0.86
SFSWAP-201ENST00000261674 PPP1R15AO75807 674 aaPredicted RBP20.4■□□□□ 0.86
SFSWAP-201ENST00000261674 CHIC2Q9UKJ5 165 aa20.39■□□□□ 0.85
SFSWAP-201ENST00000261674 TONSLQ96HA7 1378 aa20.38■□□□□ 0.85
SFSWAP-201ENST00000261674 CASKIN1Q8WXD9 1431 aa20.37■□□□□ 0.85
SFSWAP-201ENST00000261674 EFCAB5A4FU69 1503 aa20.36■□□□□ 0.85
SFSWAP-201ENST00000261674 CYB5RLQ6IPT4 315 aa20.36■□□□□ 0.85
SFSWAP-201ENST00000261674 SAMD9Q5K651 1589 aa20.32■□□□□ 0.84
SFSWAP-201ENST00000261674 UGGT2Q9NYU1 1516 aa20.32■□□□□ 0.84
SFSWAP-201ENST00000261674 KIAA0556O60303 1618 aa20.31■□□□□ 0.84
SFSWAP-201ENST00000261674 ZNF644Q9H582 1327 aaPredicted RBP20.31■□□□□ 0.84
SFSWAP-201ENST00000261674 RRP7BPQ9NSQ0 103 aa20.31■□□□□ 0.84
SFSWAP-201ENST00000261674 PLEKHD1A6NEE1 506 aa20.3■□□□□ 0.84
SFSWAP-201ENST00000261674 IRX6P78412 446 aaPredicted RBP20.28■□□□□ 0.84
SFSWAP-201ENST00000261674 FYCO1Q9BQS8 1478 aa20.28■□□□□ 0.84
SFSWAP-201ENST00000261674 CDK11AQ9UQ88 783 aaPredicted RBP20.26■□□□□ 0.83
SFSWAP-201ENST00000261674 EPRSP07814 1512 aaKnown RBP20.26■□□□□ 0.83
SFSWAP-201ENST00000261674 CNGB1Q14028 1251 aaPredicted RBP20.25■□□□□ 0.83
SFSWAP-201ENST00000261674 TIMELESSQ9UNS1 1208 aa20.25■□□□□ 0.83
SFSWAP-201ENST00000261674 HNRNPUQ00839 825 aaKnown RBP eCLIP20.24■□□□□ 0.83
SFSWAP-201ENST00000261674 NUP153P49790 1475 aaKnown RBP20.24■□□□□ 0.83
SFSWAP-201ENST00000261674 MAGI3Q5TCQ9 1506 aa20.21■□□□□ 0.83
SFSWAP-201ENST00000261674 MAP3K1Q13233 1512 aa20.21■□□□□ 0.83
SFSWAP-201ENST00000261674 CCER2I3L3R5 266 aa20.19■□□□□ 0.82
SFSWAP-201ENST00000261674 CFDP1Q9UEE9 299 aaPredicted RBP20.17■□□□□ 0.82
SFSWAP-201ENST00000261674 FGD6Q6ZV73 1430 aa20.17■□□□□ 0.82
SFSWAP-201ENST00000261674 FOXD1Q16676 465 aa20.16■□□□□ 0.82
SFSWAP-201ENST00000261674 ANP32EQ9BTT0 268 aa20.16■□□□□ 0.82
SFSWAP-201ENST00000261674 NCOA2Q15596 1464 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms