RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 EIF4G3O43432 1585 aaKnown RBP23.19■■□□□ 1.3
CCDC47-201ENST00000225726 PPARGC1BQ86YN6 1023 aaKnown RBP23.18■■□□□ 1.3
CCDC47-201ENST00000225726 EFCAB5A4FU69 1503 aa23.12■■□□□ 1.29
CCDC47-201ENST00000225726 SNAPC4Q5SXM2 1469 aa23.07■■□□□ 1.28
CCDC47-201ENST00000225726 APLP2Q06481 763 aa23.06■■□□□ 1.28
CCDC47-201ENST00000225726 MAGI1Q96QZ7 1491 aaPredicted RBP23.04■■□□□ 1.28
CCDC47-201ENST00000225726 SAMD9Q5K651 1589 aa23.01■■□□□ 1.27
CCDC47-201ENST00000225726 IQGAP2Q13576 1575 aa22.97■■□□□ 1.27
CCDC47-201ENST00000225726 TTBK1Q5TCY1 1321 aaPredicted RBP22.97■■□□□ 1.27
CCDC47-201ENST00000225726 GRIN2AQ12879 1464 aa22.96■■□□□ 1.27
CCDC47-201ENST00000225726 FHOD3Q2V2M9 1422 aa22.96■■□□□ 1.27
CCDC47-201ENST00000225726 SYNJ2O15056 1496 aa22.95■■□□□ 1.26
CCDC47-201ENST00000225726 MAP3K1Q13233 1512 aa22.92■■□□□ 1.26
CCDC47-201ENST00000225726 P3H3Q8IVL6 736 aa22.91■■□□□ 1.26
CCDC47-201ENST00000225726 PCF11O94913 1555 aaKnown RBP22.91■■□□□ 1.26
CCDC47-201ENST00000225726 FMN1Q68DA7 1419 aa22.88■■□□□ 1.25
CCDC47-201ENST00000225726 KIAA0586Q9BVV6 1533 aa22.88■■□□□ 1.25
CCDC47-201ENST00000225726 FYCO1Q9BQS8 1478 aa22.88■■□□□ 1.25
CCDC47-201ENST00000225726 TIAM1Q13009 1591 aa22.87■■□□□ 1.25
CCDC47-201ENST00000225726 UGGT2Q9NYU1 1516 aa22.87■■□□□ 1.25
CCDC47-201ENST00000225726 CASKIN1Q8WXD9 1431 aa22.86■■□□□ 1.25
CCDC47-201ENST00000225726 CFAP43Q8NDM7 1665 aa22.85■■□□□ 1.25
CCDC47-201ENST00000225726 CHMP7Q8WUX9 453 aaPredicted RBP22.84■■□□□ 1.25
CCDC47-201ENST00000225726 HRCP23327 699 aa22.83■■□□□ 1.25
CCDC47-201ENST00000225726 CEP170Q5SW79 1584 aa22.82■■□□□ 1.24
CCDC47-201ENST00000225726 KANK4Q5T7N3 995 aaPredicted RBP22.82■■□□□ 1.24
CCDC47-201ENST00000225726 NUP160Q12769 1436 aa22.79■■□□□ 1.24
CCDC47-201ENST00000225726 LRRC9Q6ZRR7 1453 aa22.75■■□□□ 1.23
CCDC47-201ENST00000225726 KIAA0556O60303 1618 aa22.74■■□□□ 1.23
CCDC47-201ENST00000225726 FBLN2P98095 1184 aa22.74■■□□□ 1.23
CCDC47-201ENST00000225726 DISP1Q96F81 1524 aa22.72■■□□□ 1.23
CCDC47-201ENST00000225726 ATP1B4Q9UN42 357 aaPredicted RBP22.69■■□□□ 1.22
CCDC47-201ENST00000225726 LRRIQ1Q96JM4 1722 aa22.68■■□□□ 1.22
CCDC47-201ENST00000225726 CHD1O14646 1710 aa22.67■■□□□ 1.22
CCDC47-201ENST00000225726 HECW1Q76N89 1606 aa22.66■■□□□ 1.22
CCDC47-201ENST00000225726 RRBP1Q9P2E9 1410 aaKnown RBP22.65■■□□□ 1.22
CCDC47-201ENST00000225726 CCDC18Q5T9S5 1454 aa22.62■■□□□ 1.21
CCDC47-201ENST00000225726 CARMIL2Q6F5E8 1435 aa22.59■■□□□ 1.21
CCDC47-201ENST00000225726 JPH4Q96JJ6 628 aa22.58■■□□□ 1.21
CCDC47-201ENST00000225726 CCNB3Q8WWL7 1395 aa22.55■■□□□ 1.2
CCDC47-201ENST00000225726 RAPGEF6Q8TEU7 1601 aa22.54■■□□□ 1.2
CCDC47-201ENST00000225726 EHBP1L1Q8N3D4 1523 aa22.54■■□□□ 1.2
CCDC47-201ENST00000225726 EPRSP07814 1512 aaKnown RBP22.54■■□□□ 1.2
CCDC47-201ENST00000225726 MTUS2Q5JR59 1369 aa22.53■■□□□ 1.2
CCDC47-201ENST00000225726 PHLDB1Q86UU1 1377 aa22.53■■□□□ 1.2
CCDC47-201ENST00000225726 ZEB1P37275 1124 aaPredicted RBP22.52■■□□□ 1.2
CCDC47-201ENST00000225726 HNRNPUL2Q1KMD3 747 aaKnown RBP22.52■■□□□ 1.2
CCDC47-201ENST00000225726 SUPT6HQ7KZ85 1726 aaKnown RBP22.49■■□□□ 1.19
CCDC47-201ENST00000225726 SHROOM2Q13796 1616 aa22.49■■□□□ 1.19
CCDC47-201ENST00000225726 CDK13Q14004 1512 aaKnown RBP22.47■■□□□ 1.19
CCDC47-201ENST00000225726 NUP153P49790 1475 aaKnown RBP22.46■■□□□ 1.19
CCDC47-201ENST00000225726 MAGI3Q5TCQ9 1506 aa22.46■■□□□ 1.19
CCDC47-201ENST00000225726 PRG4Q92954 1404 aaPredicted RBP22.45■■□□□ 1.18
CCDC47-201ENST00000225726 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.45■■□□□ 1.18
CCDC47-201ENST00000225726 NCOA2Q15596 1464 aa22.43■■□□□ 1.18
CCDC47-201ENST00000225726 ARHGEF11O15085 1522 aa22.42■■□□□ 1.18
CCDC47-201ENST00000225726 CLASP1Q7Z460 1538 aa22.41■■□□□ 1.18
CCDC47-201ENST00000225726 CCER1Q8TC90 406 aaPredicted RBP22.41■■□□□ 1.18
CCDC47-201ENST00000225726 PLB1Q6P1J6 1458 aa22.4■■□□□ 1.18
CCDC47-201ENST00000225726 ABCA8O94911 1581 aa22.4■■□□□ 1.18
CCDC47-201ENST00000225726 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.39■■□□□ 1.17
CCDC47-201ENST00000225726 FGD6Q6ZV73 1430 aa22.38■■□□□ 1.17
CCDC47-201ENST00000225726 MYOM3Q5VTT5 1437 aa22.36■■□□□ 1.17
CCDC47-201ENST00000225726 PTPRGP23470 1445 aa22.32■■□□□ 1.16
CCDC47-201ENST00000225726 ARID3CA6NKF2 412 aa22.32■■□□□ 1.16
CCDC47-201ENST00000225726 FAM50AQ14320 339 aaKnown RBP22.32■■□□□ 1.16
CCDC47-201ENST00000225726 CDK11AQ9UQ88 783 aaPredicted RBP22.31■■□□□ 1.16
CCDC47-201ENST00000225726 ERCC6L2Q5T890 1561 aa22.27■■□□□ 1.16
CCDC47-201ENST00000225726 PTPN23Q9H3S7 1636 aa22.26■■□□□ 1.15
CCDC47-201ENST00000225726 ITGAEP38570 1179 aa22.26■■□□□ 1.15
CCDC47-201ENST00000225726 TROQ12816 1431 aaPredicted RBP22.26■■□□□ 1.15
CCDC47-201ENST00000225726 ADCY10Q96PN6 1610 aa22.25■■□□□ 1.15
CCDC47-201ENST00000225726 TCOF1Q13428 1488 aaKnown RBP22.24■■□□□ 1.15
CCDC47-201ENST00000225726 ATP10BO94823 1461 aa22.23■■□□□ 1.15
CCDC47-201ENST00000225726 MIA2Q96PC5 1412 aa22.23■■□□□ 1.15
CCDC47-201ENST00000225726 UACAQ9BZF9 1416 aa22.22■■□□□ 1.15
CCDC47-201ENST00000225726 SETD5Q9C0A6 1442 aa22.17■■□□□ 1.14
CCDC47-201ENST00000225726 ABCC2Q92887 1545 aa22.16■■□□□ 1.14
CCDC47-201ENST00000225726 KIF14Q15058 1648 aa22.16■■□□□ 1.14
CCDC47-201ENST00000225726 ITSN2Q9NZM3 1697 aa22.15■■□□□ 1.14
CCDC47-201ENST00000225726 RAB3GAP2Q9H2M9 1393 aa22.14■■□□□ 1.13
CCDC47-201ENST00000225726 PLEKHD1A6NEE1 506 aa22.13■■□□□ 1.13
CCDC47-201ENST00000225726 DHX57Q6P158 1386 aaKnown RBP22.13■■□□□ 1.13
CCDC47-201ENST00000225726 UHRF1BP1LA0JNW5 1464 aa22.11■■□□□ 1.13
CCDC47-201ENST00000225726 PTPRKQ15262 1439 aa22.1■■□□□ 1.13
CCDC47-201ENST00000225726 CLSPNQ9HAW4 1339 aa22.09■■□□□ 1.13
CCDC47-201ENST00000225726 GPATCH8Q9UKJ3 1502 aaKnown RBP22.07■■□□□ 1.12
CCDC47-201ENST00000225726 ABCC10Q5T3U5 1492 aa22.07■■□□□ 1.12
CCDC47-201ENST00000225726 OSCARQ8IYS5 282 aa22.06■■□□□ 1.12
CCDC47-201ENST00000225726 HFM1A2PYH4 1435 aa22.06■■□□□ 1.12
CCDC47-201ENST00000225726 CDC42BPAQ5VT25 1732 aa22.03■■□□□ 1.12
CCDC47-201ENST00000225726 DNMT1P26358 1616 aaKnown RBP22.03■■□□□ 1.12
CCDC47-201ENST00000225726 ZCCHC11Q5TAX3 1644 aaKnown RBP22.02■■□□□ 1.12
CCDC47-201ENST00000225726 AKNAQ7Z591 1439 aa22.01■■□□□ 1.11
CCDC47-201ENST00000225726 CAMSAP2Q08AD1 1489 aa22.01■■□□□ 1.11
CCDC47-201ENST00000225726 KDM5BQ9UGL1 1544 aa22.01■■□□□ 1.11
CCDC47-201ENST00000225726 GCC2Q8IWJ2 1684 aa22■■□□□ 1.11
CCDC47-201ENST00000225726 CFDP1Q9UEE9 299 aaPredicted RBP22■■□□□ 1.11
CCDC47-201ENST00000225726 DAPK1P53355 1430 aa21.99■■□□□ 1.11
CCDC47-201ENST00000225726 NAIPQ13075 1403 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms