RNA–Protein interactions for RNA: ENST00000221494.9

SF3A2-201, Transcript of splicing factor 3a subunit 2, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SF3A2, Length 1,963 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A2-201ENST00000221494 ZNF316A6NFI3 1004 aaPredicted RBP23.83■■□□□ 1.41
SF3A2-201ENST00000221494 ABCA5Q8WWZ7 1642 aa23.83■■□□□ 1.4
SF3A2-201ENST00000221494 AQRO60306 1485 aaKnown RBP eCLIP23.76■■□□□ 1.399e-9■■■■■ 28.9
SF3A2-201ENST00000221494 ZNF608Q9ULD9 1512 aaPredicted RBP23.73■■□□□ 1.39
SF3A2-201ENST00000221494 CLIP1P30622 1438 aa23.72■■□□□ 1.39
SF3A2-201ENST00000221494 CUL7Q14999 1698 aa23.7■■□□□ 1.38
SF3A2-201ENST00000221494 GRIN2BQ13224 1484 aa23.65■■□□□ 1.38
SF3A2-201ENST00000221494 RANGAP1P46060 587 aaPredicted RBP23.64■■□□□ 1.38
SF3A2-201ENST00000221494 FHAD1B1AJZ9 1412 aa23.58■■□□□ 1.37
SF3A2-201ENST00000221494 VPS8Q8N3P4 1428 aa23.58■■□□□ 1.37
SF3A2-201ENST00000221494 PBRM1Q86U86 1689 aa23.57■■□□□ 1.36
SF3A2-201ENST00000221494 EIF4G3O43432 1585 aaKnown RBP23.56■■□□□ 1.36
SF3A2-201ENST00000221494 CLSPNQ9HAW4 1339 aa23.53■■□□□ 1.36
SF3A2-201ENST00000221494 ADAMTS12P58397 1594 aa23.52■■□□□ 1.36
SF3A2-201ENST00000221494 ARHGAP35Q9NRY4 1499 aa23.5■■□□□ 1.35
SF3A2-201ENST00000221494 SNAPC4Q5SXM2 1469 aa23.49■■□□□ 1.35
SF3A2-201ENST00000221494 ARAP1Q96P48 1450 aa23.49■■□□□ 1.35
SF3A2-201ENST00000221494 MAGI1Q96QZ7 1491 aaPredicted RBP23.44■■□□□ 1.34
SF3A2-201ENST00000221494 SLC24A1O60721 1099 aa23.39■■□□□ 1.33
SF3A2-201ENST00000221494 MIER1Q8N108 512 aa23.38■■□□□ 1.33
SF3A2-201ENST00000221494 CTTNBP2Q8WZ74 1663 aa23.38■■□□□ 1.33
SF3A2-201ENST00000221494 SYNJ2O15056 1496 aa23.36■■□□□ 1.33
SF3A2-201ENST00000221494 GRIN2AQ12879 1464 aa23.36■■□□□ 1.33
SF3A2-201ENST00000221494 CHMP7Q8WUX9 453 aaPredicted RBP23.35■■□□□ 1.33
SF3A2-201ENST00000221494 APLP2Q06481 763 aa23.32■■□□□ 1.32
SF3A2-201ENST00000221494 P3H3Q8IVL6 736 aa23.32■■□□□ 1.32
SF3A2-201ENST00000221494 EFCAB5A4FU69 1503 aa23.32■■□□□ 1.32
SF3A2-201ENST00000221494 PRKCSHP14314 528 aaPredicted RBP23.29■■□□□ 1.32
SF3A2-201ENST00000221494 FBLN2P98095 1184 aa23.29■■□□□ 1.32
SF3A2-201ENST00000221494 HNRNPUL2Q1KMD3 747 aaKnown RBP23.28■■□□□ 1.32
SF3A2-201ENST00000221494 KIAA0586Q9BVV6 1533 aa23.27■■□□□ 1.32
SF3A2-201ENST00000221494 FHOD3Q2V2M9 1422 aa23.27■■□□□ 1.32
SF3A2-201ENST00000221494 IQGAP2Q13576 1575 aa23.26■■□□□ 1.31
SF3A2-201ENST00000221494 YTHDC1Q96MU7 727 aaKnown RBP23.25■■□□□ 1.31
SF3A2-201ENST00000221494 SAMD9Q5K651 1589 aa23.23■■□□□ 1.31
SF3A2-201ENST00000221494 NUP160Q12769 1436 aa23.21■■□□□ 1.31
SF3A2-201ENST00000221494 DHX57Q6P158 1386 aaKnown RBP23.19■■□□□ 1.3
SF3A2-201ENST00000221494 CEP170Q5SW79 1584 aa23.19■■□□□ 1.3
SF3A2-201ENST00000221494 UGGT2Q9NYU1 1516 aa23.18■■□□□ 1.3
SF3A2-201ENST00000221494 RRBP1Q9P2E9 1410 aaKnown RBP23.16■■□□□ 1.3
SF3A2-201ENST00000221494 FMN1Q68DA7 1419 aa23.15■■□□□ 1.3
SF3A2-201ENST00000221494 KANK4Q5T7N3 995 aaPredicted RBP23.12■■□□□ 1.29
SF3A2-201ENST00000221494 CASKIN1Q8WXD9 1431 aa23.12■■□□□ 1.29
SF3A2-201ENST00000221494 DISP1Q96F81 1524 aa23.09■■□□□ 1.29
SF3A2-201ENST00000221494 JPH4Q96JJ6 628 aa23.09■■□□□ 1.29
SF3A2-201ENST00000221494 PCF11O94913 1555 aaKnown RBP23.08■■□□□ 1.29
SF3A2-201ENST00000221494 FYCO1Q9BQS8 1478 aa23.08■■□□□ 1.29
SF3A2-201ENST00000221494 MAP3K1Q13233 1512 aa23.07■■□□□ 1.28
SF3A2-201ENST00000221494 ERICH6Q7L0X2 663 aa23.07■■□□□ 1.28
SF3A2-201ENST00000221494 ATP1B4Q9UN42 357 aaPredicted RBP23.04■■□□□ 1.28
SF3A2-201ENST00000221494 TIAM1Q13009 1591 aa23.02■■□□□ 1.28
SF3A2-201ENST00000221494 KIAA0556O60303 1618 aa23.02■■□□□ 1.28
SF3A2-201ENST00000221494 CHD1O14646 1710 aa23■■□□□ 1.27
SF3A2-201ENST00000221494 LRRC9Q6ZRR7 1453 aa22.96■■□□□ 1.27
SF3A2-201ENST00000221494 CARMIL2Q6F5E8 1435 aa22.95■■□□□ 1.27
SF3A2-201ENST00000221494 SUPT16HQ9Y5B9 1047 aaKnown RBP22.95■■□□□ 1.26
SF3A2-201ENST00000221494 CFAP43Q8NDM7 1665 aa22.91■■□□□ 1.26
SF3A2-201ENST00000221494 CCNB3Q8WWL7 1395 aa22.9■■□□□ 1.26
SF3A2-201ENST00000221494 PRG4Q92954 1404 aaPredicted RBP22.89■■□□□ 1.26
SF3A2-201ENST00000221494 CCDC18Q5T9S5 1454 aa22.83■■□□□ 1.25
SF3A2-201ENST00000221494 HECW1Q76N89 1606 aa22.83■■□□□ 1.25
SF3A2-201ENST00000221494 EPRSP07814 1512 aaKnown RBP22.83■■□□□ 1.24
SF3A2-201ENST00000221494 CLASP1Q7Z460 1538 aa22.83■■□□□ 1.24
SF3A2-201ENST00000221494 SHROOM2Q13796 1616 aa22.82■■□□□ 1.24
SF3A2-201ENST00000221494 LRRIQ1Q96JM4 1722 aa22.82■■□□□ 1.24
SF3A2-201ENST00000221494 MTUS2Q5JR59 1369 aa22.8■■□□□ 1.24
SF3A2-201ENST00000221494 NUP153P49790 1475 aaKnown RBP22.8■■□□□ 1.24
SF3A2-201ENST00000221494 PLB1Q6P1J6 1458 aa22.8■■□□□ 1.24
SF3A2-201ENST00000221494 PHLDB1Q86UU1 1377 aa22.78■■□□□ 1.24
SF3A2-201ENST00000221494 MAPKBP1O60336 1514 aa22.78■■□□□ 1.24
SF3A2-201ENST00000221494 RAPGEF6Q8TEU7 1601 aa22.77■■□□□ 1.24
SF3A2-201ENST00000221494 PTPRGP23470 1445 aa22.76■■□□□ 1.23
SF3A2-201ENST00000221494 ARID3CA6NKF2 412 aa22.76■■□□□ 1.23
SF3A2-201ENST00000221494 CDK13Q14004 1512 aaKnown RBP22.76■■□□□ 1.23
SF3A2-201ENST00000221494 MAGI3Q5TCQ9 1506 aa22.74■■□□□ 1.23
SF3A2-201ENST00000221494 TIMELESSQ9UNS1 1208 aa22.73■■□□□ 1.23
SF3A2-201ENST00000221494 ABCA8O94911 1581 aa22.71■■□□□ 1.23
SF3A2-201ENST00000221494 ERCC6L2Q5T890 1561 aa22.71■■□□□ 1.23
SF3A2-201ENST00000221494 EHBP1L1Q8N3D4 1523 aa22.71■■□□□ 1.23
SF3A2-201ENST00000221494 TSHZ2Q9NRE2 1034 aa22.7■■□□□ 1.22
SF3A2-201ENST00000221494 RAB3GAP2Q9H2M9 1393 aa22.69■■□□□ 1.22
SF3A2-201ENST00000221494 OSCARQ8IYS5 282 aa22.69■■□□□ 1.22
SF3A2-201ENST00000221494 SETD5Q9C0A6 1442 aa22.68■■□□□ 1.22
SF3A2-201ENST00000221494 NCOA2Q15596 1464 aa22.67■■□□□ 1.22
SF3A2-201ENST00000221494 CDK11AQ9UQ88 783 aaPredicted RBP22.65■■□□□ 1.22
SF3A2-201ENST00000221494 ARHGEF11O15085 1522 aa22.64■■□□□ 1.21
SF3A2-201ENST00000221494 UACAQ9BZF9 1416 aa22.63■■□□□ 1.21
SF3A2-201ENST00000221494 ATP10BO94823 1461 aa22.62■■□□□ 1.21
SF3A2-201ENST00000221494 ANP32EQ9BTT0 268 aa22.61■■□□□ 1.21
SF3A2-201ENST00000221494 SUPT6HQ7KZ85 1726 aaKnown RBP22.6■■□□□ 1.21
SF3A2-201ENST00000221494 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.6■■□□□ 1.211e-7■□□□□ 11.3
SF3A2-201ENST00000221494 FGD6Q6ZV73 1430 aa22.59■■□□□ 1.21
SF3A2-201ENST00000221494 MYOM3Q5VTT5 1437 aa22.58■■□□□ 1.21
SF3A2-201ENST00000221494 TROQ12816 1431 aaPredicted RBP22.57■■□□□ 1.2
SF3A2-201ENST00000221494 FAM50AQ14320 339 aaKnown RBP22.56■■□□□ 1.2
SF3A2-201ENST00000221494 CCER2I3L3R5 266 aa22.55■■□□□ 1.2
SF3A2-201ENST00000221494 PLEKHD1A6NEE1 506 aa22.53■■□□□ 1.2
SF3A2-201ENST00000221494 ITGAEP38570 1179 aa22.52■■□□□ 1.2
SF3A2-201ENST00000221494 ABCC2Q92887 1545 aa22.51■■□□□ 1.19
SF3A2-201ENST00000221494 UHRF1BP1LA0JNW5 1464 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms