RNA–Protein interactions for RNA: ENST00000221494.9

SF3A2-201, Transcript of splicing factor 3a subunit 2, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SF3A2, Length 1,963 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A2-201ENST00000221494 NISCHQ9Y2I1 1504 aa33.99■■■■□ 3.03
SF3A2-201ENST00000221494 CCDC180Q9P1Z9 1646 aa29.53■■■□□ 2.32
SF3A2-201ENST00000221494 ZCCHC6Q5VYS8 1495 aaKnown RBP28.54■■■□□ 2.16
SF3A2-201ENST00000221494 DCAF8L2P0C7V8 631 aa28.13■■■□□ 2.09
SF3A2-201ENST00000221494 DCAF1Q9Y4B6 1507 aa28.09■■■□□ 2.09
SF3A2-201ENST00000221494 ABCC9O60706 1549 aa28.07■■■□□ 2.08
SF3A2-201ENST00000221494 MYO15BQ96JP2 1530 aa27.77■■■□□ 2.04
SF3A2-201ENST00000221494 SHROOM4Q9ULL8 1493 aa27.73■■■□□ 2.03
SF3A2-201ENST00000221494 NACADO15069 1562 aa27.58■■■□□ 2.01
SF3A2-201ENST00000221494 RB1CC1Q8TDY2 1594 aa27.33■■□□□ 1.97
SF3A2-201ENST00000221494 SCRIBQ14160 1630 aa27.21■■□□□ 1.95
SF3A2-201ENST00000221494 SUPT5HO00267 1087 aaKnown RBP26.69■■□□□ 1.86
SF3A2-201ENST00000221494 UNC13AQ9UPW8 1703 aa26.69■■□□□ 1.86
SF3A2-201ENST00000221494 BICRAQ9NZM4 1560 aa26.55■■□□□ 1.84
SF3A2-201ENST00000221494 PABPN1Q86U42 306 aaKnown RBP eCLIP26.53■■□□□ 1.848e-6■□□□□ 8.9
SF3A2-201ENST00000221494 CECR2Q9BXF3 1484 aa26.45■■□□□ 1.82
SF3A2-201ENST00000221494 HRCP23327 699 aa26.44■■□□□ 1.82
SF3A2-201ENST00000221494 RSF1Q96T23 1441 aaPredicted RBP26.4■■□□□ 1.82
SF3A2-201ENST00000221494 CHIC1Q5VXU3 224 aa26.31■■□□□ 1.8
SF3A2-201ENST00000221494 MROH2BQ7Z745 1585 aa26.27■■□□□ 1.8
SF3A2-201ENST00000221494 BAZ1AQ9NRL2 1556 aaPredicted RBP26.21■■□□□ 1.79
SF3A2-201ENST00000221494 SMARCA4P51532 1647 aa26.08■■□□□ 1.77
SF3A2-201ENST00000221494 WIZO95785 1651 aa25.99■■□□□ 1.75
SF3A2-201ENST00000221494 PCGF6Q9BYE7 350 aa25.83■■□□□ 1.73
SF3A2-201ENST00000221494 PEG3Q9GZU2 1588 aa25.79■■□□□ 1.72
SF3A2-201ENST00000221494 EIF4G1Q04637 1599 aaKnown RBP25.74■■□□□ 1.71
SF3A2-201ENST00000221494 TOP2AP11388 1531 aaKnown RBP25.73■■□□□ 1.71
SF3A2-201ENST00000221494 ATAD2BQ9ULI0 1458 aa25.73■■□□□ 1.71
SF3A2-201ENST00000221494 SMARCA2P51531 1590 aa25.65■■□□□ 1.7
SF3A2-201ENST00000221494 BAZ1BQ9UIG0 1483 aaKnown RBP25.55■■□□□ 1.68
SF3A2-201ENST00000221494 CCDC88BA6NC98 1476 aa25.53■■□□□ 1.68
SF3A2-201ENST00000221494 NCAPD3P42695 1498 aa25.52■■□□□ 1.68
SF3A2-201ENST00000221494 TRIM26Q12899 539 aaPredicted RBP25.51■■□□□ 1.67
SF3A2-201ENST00000221494 HMGXB3Q12766 1538 aa25.42■■□□□ 1.66
SF3A2-201ENST00000221494 PPARGC1BQ86YN6 1023 aaKnown RBP25.42■■□□□ 1.66
SF3A2-201ENST00000221494 ZEB1P37275 1124 aaPredicted RBP25.38■■□□□ 1.65
SF3A2-201ENST00000221494 CC2D2AQ9P2K1 1620 aa25.35■■□□□ 1.65
SF3A2-201ENST00000221494 LOC105371045A0A1W2PR82 267 aa25.31■■□□□ 1.64
SF3A2-201ENST00000221494 PELP1Q8IZL8 1130 aaKnown RBP25.12■■□□□ 1.61
SF3A2-201ENST00000221494 TRIM41Q8WV44 630 aa25.09■■□□□ 1.61
SF3A2-201ENST00000221494 CFTRP13569 1480 aa24.94■■□□□ 1.58
SF3A2-201ENST00000221494 ABCC8Q09428 1581 aa24.94■■□□□ 1.58
SF3A2-201ENST00000221494 MYT1Q01538 1121 aa24.93■■□□□ 1.58
SF3A2-201ENST00000221494 DNAJC5BQ9UF47 199 aa24.89■■□□□ 1.58
SF3A2-201ENST00000221494 CADPSQ9ULU8 1353 aa24.88■■□□□ 1.57
SF3A2-201ENST00000221494 WRNQ14191 1432 aaPredicted RBP eCLIP24.82■■□□□ 1.569e-7■■■□□ 18.8
SF3A2-201ENST00000221494 SYNJ1O43426 1573 aa24.68■■□□□ 1.54
SF3A2-201ENST00000221494 NESP48681 1621 aa24.65■■□□□ 1.54
SF3A2-201ENST00000221494 FAM9AQ8IZU1 332 aaPredicted RBP24.63■■□□□ 1.53
SF3A2-201ENST00000221494 PRDM2Q13029 1718 aa24.59■■□□□ 1.53
SF3A2-201ENST00000221494 LAMC3Q9Y6N6 1575 aa24.58■■□□□ 1.53
SF3A2-201ENST00000221494 FANCD2Q9BXW9 1451 aa24.57■■□□□ 1.52
SF3A2-201ENST00000221494 TOP2BQ02880 1626 aa24.57■■□□□ 1.52
SF3A2-201ENST00000221494 CUX1P39880 1505 aa24.55■■□□□ 1.52
SF3A2-201ENST00000221494 SOGA1O94964 1423 aa24.53■■□□□ 1.52
SF3A2-201ENST00000221494 SCAF1Q9H7N4 1312 aaKnown RBP24.52■■□□□ 1.52
SF3A2-201ENST00000221494 BIVM-ERCC5R4GMW8 1640 aa24.51■■□□□ 1.51
SF3A2-201ENST00000221494 PDS5BQ9NTI5 1447 aa24.45■■□□□ 1.5
SF3A2-201ENST00000221494 RUSC2Q8N2Y8 1516 aa24.43■■□□□ 1.5
SF3A2-201ENST00000221494 EEA1Q15075 1411 aa24.42■■□□□ 1.5
SF3A2-201ENST00000221494 CEP164Q9UPV0 1460 aa24.39■■□□□ 1.5
SF3A2-201ENST00000221494 CSRNP3Q8WYN3 585 aa24.36■■□□□ 1.49
SF3A2-201ENST00000221494 DNMBPQ6XZF7 1577 aa24.3■■□□□ 1.48
SF3A2-201ENST00000221494 TOPBP1Q92547 1522 aa24.29■■□□□ 1.48
SF3A2-201ENST00000221494 FGD5Q6ZNL6 1462 aa24.28■■□□□ 1.48
SF3A2-201ENST00000221494 EHMT2Q96KQ7 1210 aa24.28■■□□□ 1.48
SF3A2-201ENST00000221494 URB2Q14146 1524 aaKnown RBP24.27■■□□□ 1.48
SF3A2-201ENST00000221494 ACIN1Q9UKV3 1341 aaKnown RBP24.26■■□□□ 1.47
SF3A2-201ENST00000221494 KIF21AQ7Z4S6 1674 aa24.23■■□□□ 1.47
SF3A2-201ENST00000221494 CCER1Q8TC90 406 aaPredicted RBP24.2■■□□□ 1.46
SF3A2-201ENST00000221494 TTBK1Q5TCY1 1321 aaPredicted RBP24.2■■□□□ 1.46
SF3A2-201ENST00000221494 KIF27Q86VH2 1401 aa24.19■■□□□ 1.46
SF3A2-201ENST00000221494 POLA1P09884 1462 aaPredicted RBP24.19■■□□□ 1.46
SF3A2-201ENST00000221494 CENPBP07199 599 aaPredicted RBP24.16■■□□□ 1.46
SF3A2-201ENST00000221494 CUX2O14529 1486 aa24.13■■□□□ 1.45
SF3A2-201ENST00000221494 RAD54L2Q9Y4B4 1467 aa24.12■■□□□ 1.45
SF3A2-201ENST00000221494 MRC2Q9UBG0 1479 aa24.11■■□□□ 1.45
SF3A2-201ENST00000221494 TNIKQ9UKE5 1360 aa24.11■■□□□ 1.45
SF3A2-201ENST00000221494 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.09■■□□□ 1.45
SF3A2-201ENST00000221494 GOLGA3Q08378 1498 aa24.08■■□□□ 1.45
SF3A2-201ENST00000221494 CEP162Q5TB80 1403 aa24.08■■□□□ 1.44
SF3A2-201ENST00000221494 ABCA10Q8WWZ4 1543 aa24.07■■□□□ 1.44
SF3A2-201ENST00000221494 KIF21BO75037 1637 aa24.06■■□□□ 1.44
SF3A2-201ENST00000221494 DIEXFQ68CQ4 756 aaKnown RBP24.05■■□□□ 1.44
SF3A2-201ENST00000221494 PRXQ9BXM0 1461 aa24.05■■□□□ 1.44
SF3A2-201ENST00000221494 IGF1RP08069 1367 aa24.04■■□□□ 1.44
SF3A2-201ENST00000221494 ERCC6Q03468 1493 aa24.04■■□□□ 1.44
SF3A2-201ENST00000221494 UBTFP17480 764 aaKnown RBP24.02■■□□□ 1.44
SF3A2-201ENST00000221494 NEUROD1Q13562 356 aa24.02■■□□□ 1.44
SF3A2-201ENST00000221494 RAPGEF2Q9Y4G8 1499 aa24.01■■□□□ 1.43
SF3A2-201ENST00000221494 WDR62O43379 1518 aa23.98■■□□□ 1.43
SF3A2-201ENST00000221494 ERICH3Q5RHP9 1530 aa23.93■■□□□ 1.42
SF3A2-201ENST00000221494 TDRD9Q8NDG6 1382 aaKnown RBP23.91■■□□□ 1.42
SF3A2-201ENST00000221494 TARBP1Q13395 1621 aaKnown RBP23.91■■□□□ 1.42
SF3A2-201ENST00000221494 WDR97A6NE52 1622 aa23.9■■□□□ 1.42
SF3A2-201ENST00000221494 CARMIL1Q5VZK9 1371 aa23.88■■□□□ 1.41
SF3A2-201ENST00000221494 THOC2Q8NI27 1593 aaKnown RBP23.88■■□□□ 1.41
SF3A2-201ENST00000221494 GTF3C3Q9Y5Q9 886 aa23.85■■□□□ 1.41
SF3A2-201ENST00000221494 GAPVD1Q14C86 1478 aa23.84■■□□□ 1.41
SF3A2-201ENST00000221494 IFT140Q96RY7 1462 aa23.83■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms