Protein–RNA interactions for Protein: Q9HBD1

RC3H2, Roquin-2, humanhuman

Known RBP Predictions only

Length 1,191 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H2Q9HBD1 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC27.61■■■□□ 2.01
RC3H2Q9HBD1 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
RC3H2Q9HBD1 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC27.6■■■□□ 2.01
RC3H2Q9HBD1 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
RC3H2Q9HBD1 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC27.6■■■□□ 2.01
RC3H2Q9HBD1 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
RC3H2Q9HBD1 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC27.59■■■□□ 2.01
RC3H2Q9HBD1 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
RC3H2Q9HBD1 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
RC3H2Q9HBD1 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC27.58■■■□□ 2.01
RC3H2Q9HBD1 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
RC3H2Q9HBD1 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC27.58■■■□□ 2.01
RC3H2Q9HBD1 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC27.58■■■□□ 2.01
RC3H2Q9HBD1 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC27.57■■■□□ 2
RC3H2Q9HBD1 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC27.57■■■□□ 2
RC3H2Q9HBD1 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC27.56■■■□□ 2
RC3H2Q9HBD1 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC27.56■■■□□ 2
RC3H2Q9HBD1 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC27.56■■■□□ 2
RC3H2Q9HBD1 KRT18P60-201ENST00000312876 1297 ntBASIC27.55■■■□□ 2
RC3H2Q9HBD1 GFER-205ENST00000569451 517 ntTSL 5 BASIC27.55■■■□□ 2
RC3H2Q9HBD1 MEST-211ENST00000437945 1455 ntTSL 5 BASIC27.55■■■□□ 2
RC3H2Q9HBD1 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC27.55■■■□□ 2
RC3H2Q9HBD1 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC27.55■■■□□ 2
RC3H2Q9HBD1 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
RC3H2Q9HBD1 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC27.53■■■□□ 2
RC3H2Q9HBD1 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC27.53■■■□□ 2
RC3H2Q9HBD1 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC27.53■■■□□ 2
RC3H2Q9HBD1 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC27.52■■■□□ 2
RC3H2Q9HBD1 ECEL1P2-201ENST00000461596 1295 ntBASIC27.52■■■□□ 2
RC3H2Q9HBD1 MED25-210ENST00000612854 801 ntTSL 5 BASIC27.52■■■□□ 2
RC3H2Q9HBD1 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC27.52■■■□□ 2
RC3H2Q9HBD1 MED25-214ENST00000622402 642 ntTSL 5 BASIC27.52■■■□□ 2
RC3H2Q9HBD1 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
RC3H2Q9HBD1 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC27.52■■■□□ 2
RC3H2Q9HBD1 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
RC3H2Q9HBD1 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
RC3H2Q9HBD1 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC27.49■■□□□ 1.99
RC3H2Q9HBD1 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
RC3H2Q9HBD1 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
RC3H2Q9HBD1 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC27.49■■□□□ 1.99
RC3H2Q9HBD1 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC27.49■■□□□ 1.99
RC3H2Q9HBD1 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
RC3H2Q9HBD1 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
RC3H2Q9HBD1 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
RC3H2Q9HBD1 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
RC3H2Q9HBD1 TSPY13P-201ENST00000338964 914 ntBASIC27.48■■□□□ 1.99
RC3H2Q9HBD1 AC004987.1-201ENST00000428627 508 ntBASIC27.48■■□□□ 1.99
RC3H2Q9HBD1 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
RC3H2Q9HBD1 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
RC3H2Q9HBD1 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC27.48■■□□□ 1.99
RC3H2Q9HBD1 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
RC3H2Q9HBD1 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
RC3H2Q9HBD1 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC27.47■■□□□ 1.99
RC3H2Q9HBD1 AL157400.5-201ENST00000507624 621 ntBASIC27.47■■□□□ 1.99
RC3H2Q9HBD1 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC27.47■■□□□ 1.99
RC3H2Q9HBD1 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
RC3H2Q9HBD1 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
RC3H2Q9HBD1 ATP5G2P3-201ENST00000429083 425 ntBASIC27.46■■□□□ 1.99
RC3H2Q9HBD1 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
RC3H2Q9HBD1 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
RC3H2Q9HBD1 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC27.45■■□□□ 1.99
RC3H2Q9HBD1 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC27.45■■□□□ 1.99
RC3H2Q9HBD1 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC27.45■■□□□ 1.99
RC3H2Q9HBD1 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC27.45■■□□□ 1.99
RC3H2Q9HBD1 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
RC3H2Q9HBD1 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC27.45■■□□□ 1.98
RC3H2Q9HBD1 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
RC3H2Q9HBD1 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
RC3H2Q9HBD1 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC27.44■■□□□ 1.98
RC3H2Q9HBD1 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
RC3H2Q9HBD1 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC27.44■■□□□ 1.98
RC3H2Q9HBD1 MOB2-207ENST00000614710 705 ntTSL 5 BASIC27.44■■□□□ 1.98
RC3H2Q9HBD1 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
RC3H2Q9HBD1 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
RC3H2Q9HBD1 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC27.43■■□□□ 1.98
RC3H2Q9HBD1 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
RC3H2Q9HBD1 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC27.42■■□□□ 1.98
RC3H2Q9HBD1 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
RC3H2Q9HBD1 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC27.41■■□□□ 1.98
RC3H2Q9HBD1 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
RC3H2Q9HBD1 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC27.4■■□□□ 1.98
RC3H2Q9HBD1 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
RC3H2Q9HBD1 GUK1-208ENST00000366728 842 ntTSL 2 BASIC27.4■■□□□ 1.98
RC3H2Q9HBD1 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC27.4■■□□□ 1.98
RC3H2Q9HBD1 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC27.4■■□□□ 1.98
RC3H2Q9HBD1 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC27.39■■□□□ 1.98
RC3H2Q9HBD1 AC126177.7-201ENST00000547904 679 ntBASIC27.39■■□□□ 1.98
RC3H2Q9HBD1 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
RC3H2Q9HBD1 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC27.39■■□□□ 1.97
RC3H2Q9HBD1 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC27.39■■□□□ 1.97
RC3H2Q9HBD1 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC27.38■■□□□ 1.97
RC3H2Q9HBD1 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC27.38■■□□□ 1.97
RC3H2Q9HBD1 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
RC3H2Q9HBD1 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC27.36■■□□□ 1.97
RC3H2Q9HBD1 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC27.36■■□□□ 1.97
RC3H2Q9HBD1 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
RC3H2Q9HBD1 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC27.35■■□□□ 1.97
RC3H2Q9HBD1 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
RC3H2Q9HBD1 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
RC3H2Q9HBD1 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC27.35■■□□□ 1.97
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms