Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
CDX2Q99626 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC27.48■■□□□ 1.99
CDX2Q99626 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC27.48■■□□□ 1.99
CDX2Q99626 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC27.48■■□□□ 1.99
CDX2Q99626 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC27.48■■□□□ 1.99
CDX2Q99626 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
CDX2Q99626 OR2A1-AS1-204ENST00000470435 602 ntBASIC27.47■■□□□ 1.99
CDX2Q99626 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC27.47■■□□□ 1.99
CDX2Q99626 AC009831.1-201ENST00000580420 1582 ntBASIC27.47■■□□□ 1.99
CDX2Q99626 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC27.47■■□□□ 1.99
CDX2Q99626 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
CDX2Q99626 MIR219A2-201ENST00000608502 1504 ntBASIC27.46■■□□□ 1.99
CDX2Q99626 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
CDX2Q99626 AC010980.1-201ENST00000587192 1142 ntBASIC27.45■■□□□ 1.98
CDX2Q99626 BHLHE23-202ENST00000612929 1109 ntBASIC27.45■■□□□ 1.98
CDX2Q99626 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
CDX2Q99626 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
CDX2Q99626 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
CDX2Q99626 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC27.44■■□□□ 1.98
CDX2Q99626 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
CDX2Q99626 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
CDX2Q99626 AC007029.1-201ENST00000604183 313 ntBASIC27.44■■□□□ 1.98
CDX2Q99626 MOB2-207ENST00000614710 705 ntTSL 5 BASIC27.44■■□□□ 1.98
CDX2Q99626 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC27.44■■□□□ 1.98
CDX2Q99626 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
CDX2Q99626 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC27.43■■□□□ 1.98
CDX2Q99626 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
CDX2Q99626 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC27.43■■□□□ 1.98
CDX2Q99626 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC27.42■■□□□ 1.98
CDX2Q99626 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
CDX2Q99626 AC025884.2-201ENST00000553429 711 ntBASIC27.42■■□□□ 1.98
CDX2Q99626 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
CDX2Q99626 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
CDX2Q99626 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC27.4■■□□□ 1.98
CDX2Q99626 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
CDX2Q99626 AC110285.7-201ENST00000624417 1536 ntBASIC27.4■■□□□ 1.98
CDX2Q99626 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
CDX2Q99626 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
CDX2Q99626 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC27.39■■□□□ 1.98
CDX2Q99626 AL356441.2-201ENST00000443009 864 ntBASIC27.39■■□□□ 1.98
CDX2Q99626 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC27.39■■□□□ 1.98
CDX2Q99626 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
CDX2Q99626 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC27.38■■□□□ 1.97
CDX2Q99626 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC27.38■■□□□ 1.97
CDX2Q99626 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC27.38■■□□□ 1.97
CDX2Q99626 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC27.37■■□□□ 1.97
CDX2Q99626 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC27.37■■□□□ 1.97
CDX2Q99626 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC27.37■■□□□ 1.97
CDX2Q99626 AC126177.7-201ENST00000547904 679 ntBASIC27.36■■□□□ 1.97
CDX2Q99626 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CDX2Q99626 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CDX2Q99626 YBX1P4-201ENST00000392794 808 ntBASIC27.35■■□□□ 1.97
CDX2Q99626 AL157400.5-201ENST00000507624 621 ntBASIC27.35■■□□□ 1.97
CDX2Q99626 AC074183.2-201ENST00000623112 922 ntBASIC27.35■■□□□ 1.97
CDX2Q99626 RPS2-210ENST00000530225 765 ntTSL 2 BASIC27.34■■□□□ 1.97
CDX2Q99626 LSM7-203ENST00000585409 512 ntTSL 2 BASIC27.34■■□□□ 1.97
CDX2Q99626 WHAMMP2-203ENST00000563942 1603 ntBASIC27.34■■□□□ 1.97
CDX2Q99626 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC27.33■■□□□ 1.97
CDX2Q99626 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC27.33■■□□□ 1.97
CDX2Q99626 AC103834.1-201ENST00000520383 144 ntBASIC27.33■■□□□ 1.97
CDX2Q99626 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC27.33■■□□□ 1.97
CDX2Q99626 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
CDX2Q99626 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC27.32■■□□□ 1.96
CDX2Q99626 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC27.32■■□□□ 1.96
CDX2Q99626 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
CDX2Q99626 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CDX2Q99626 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC27.31■■□□□ 1.96
CDX2Q99626 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CDX2Q99626 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC27.3■■□□□ 1.96
CDX2Q99626 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CDX2Q99626 DUX4L9-201ENST00000449051 1259 ntBASIC27.3■■□□□ 1.96
CDX2Q99626 REST-210ENST00000638187 1334 ntTSL 5 BASIC27.3■■□□□ 1.96
CDX2Q99626 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
CDX2Q99626 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC27.3■■□□□ 1.96
CDX2Q99626 AC135983.2-203ENST00000454486 1613 ntBASIC27.3■■□□□ 1.96
CDX2Q99626 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC27.29■■□□□ 1.96
CDX2Q99626 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC27.29■■□□□ 1.96
CDX2Q99626 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC27.29■■□□□ 1.96
CDX2Q99626 MED25-210ENST00000612854 801 ntTSL 5 BASIC27.29■■□□□ 1.96
CDX2Q99626 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
CDX2Q99626 MED25-214ENST00000622402 642 ntTSL 5 BASIC27.29■■□□□ 1.96
CDX2Q99626 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC27.29■■□□□ 1.96
CDX2Q99626 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
CDX2Q99626 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
CDX2Q99626 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
CDX2Q99626 AC008406.3-201ENST00000620001 1374 ntBASIC27.28■■□□□ 1.96
CDX2Q99626 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC27.28■■□□□ 1.96
CDX2Q99626 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
CDX2Q99626 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC27.28■■□□□ 1.96
CDX2Q99626 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC27.28■■□□□ 1.96
CDX2Q99626 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC27.27■■□□□ 1.96
CDX2Q99626 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CDX2Q99626 BEX3-202ENST00000372634 753 ntTSL 2 BASIC27.27■■□□□ 1.96
CDX2Q99626 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC27.27■■□□□ 1.96
CDX2Q99626 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC27.27■■□□□ 1.96
CDX2Q99626 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC27.27■■□□□ 1.96
CDX2Q99626 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC27.27■■□□□ 1.96
CDX2Q99626 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
CDX2Q99626 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
CDX2Q99626 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC27.26■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms