Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC27.4■■□□□ 1.98
SCN1AP35498 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
SCN1AP35498 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC27.4■■□□□ 1.98
SCN1AP35498 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC27.39■■□□□ 1.98
SCN1AP35498 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
SCN1AP35498 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
SCN1AP35498 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC27.39■■□□□ 1.97
SCN1AP35498 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC27.38■■□□□ 1.97
SCN1AP35498 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC27.38■■□□□ 1.97
SCN1AP35498 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC27.38■■□□□ 1.97
SCN1AP35498 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC27.37■■□□□ 1.97
SCN1AP35498 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC27.37■■□□□ 1.97
SCN1AP35498 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SCN1AP35498 AC110285.7-201ENST00000624417 1536 ntBASIC27.36■■□□□ 1.97
SCN1AP35498 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC27.36■■□□□ 1.97
SCN1AP35498 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC27.36■■□□□ 1.97
SCN1AP35498 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC27.36■■□□□ 1.97
SCN1AP35498 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC27.35■■□□□ 1.97
SCN1AP35498 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SCN1AP35498 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC27.35■■□□□ 1.97
SCN1AP35498 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC27.35■■□□□ 1.97
SCN1AP35498 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC27.34■■□□□ 1.97
SCN1AP35498 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC27.34■■□□□ 1.97
SCN1AP35498 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SCN1AP35498 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC27.34■■□□□ 1.97
SCN1AP35498 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC27.33■■□□□ 1.97
SCN1AP35498 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC27.33■■□□□ 1.97
SCN1AP35498 AC148477.6-201ENST00000623746 465 ntBASIC27.33■■□□□ 1.97
SCN1AP35498 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC27.33■■□□□ 1.96
SCN1AP35498 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC27.32■■□□□ 1.96
SCN1AP35498 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC27.32■■□□□ 1.96
SCN1AP35498 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC27.32■■□□□ 1.96
SCN1AP35498 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
SCN1AP35498 RPS2-210ENST00000530225 765 ntTSL 2 BASIC27.31■■□□□ 1.96
SCN1AP35498 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
SCN1AP35498 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SCN1AP35498 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC27.31■■□□□ 1.96
SCN1AP35498 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
SCN1AP35498 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC27.31■■□□□ 1.96
SCN1AP35498 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC27.31■■□□□ 1.96
SCN1AP35498 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC27.31■■□□□ 1.96
SCN1AP35498 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SCN1AP35498 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SCN1AP35498 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC27.3■■□□□ 1.96
SCN1AP35498 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC27.3■■□□□ 1.96
SCN1AP35498 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SCN1AP35498 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SCN1AP35498 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SCN1AP35498 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SCN1AP35498 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC27.29■■□□□ 1.96
SCN1AP35498 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
SCN1AP35498 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC27.28■■□□□ 1.96
SCN1AP35498 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC27.28■■□□□ 1.96
SCN1AP35498 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
SCN1AP35498 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC27.28■■□□□ 1.96
SCN1AP35498 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC27.28■■□□□ 1.96
SCN1AP35498 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC27.28■■□□□ 1.96
SCN1AP35498 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
SCN1AP35498 SRP68-213ENST00000629930 165 ntTSL 5 BASIC27.27■■□□□ 1.96
SCN1AP35498 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC27.27■■□□□ 1.96
SCN1AP35498 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC27.26■■□□□ 1.96
SCN1AP35498 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
SCN1AP35498 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
SCN1AP35498 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
SCN1AP35498 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
SCN1AP35498 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC27.23■■□□□ 1.95
SCN1AP35498 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC27.23■■□□□ 1.95
SCN1AP35498 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
SCN1AP35498 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
SCN1AP35498 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC27.22■■□□□ 1.95
SCN1AP35498 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
SCN1AP35498 AC008813.1-201ENST00000536597 885 ntBASIC27.22■■□□□ 1.95
SCN1AP35498 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC27.22■■□□□ 1.95
SCN1AP35498 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
SCN1AP35498 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
SCN1AP35498 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
SCN1AP35498 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
SCN1AP35498 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC27.21■■□□□ 1.95
SCN1AP35498 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC27.2■■□□□ 1.95
SCN1AP35498 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
SCN1AP35498 DRD5P2-201ENST00000421395 2012 ntBASIC27.2■■□□□ 1.94
SCN1AP35498 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC27.19■■□□□ 1.94
SCN1AP35498 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC27.18■■□□□ 1.94
SCN1AP35498 AP002414.2-202ENST00000590929 1450 ntBASIC27.18■■□□□ 1.94
SCN1AP35498 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC27.18■■□□□ 1.94
SCN1AP35498 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC27.17■■□□□ 1.94
SCN1AP35498 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SCN1AP35498 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
SCN1AP35498 CHST11-203ENST00000547956 936 ntTSL 2 BASIC27.17■■□□□ 1.94
SCN1AP35498 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SCN1AP35498 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC27.17■■□□□ 1.94
SCN1AP35498 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SCN1AP35498 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
SCN1AP35498 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SCN1AP35498 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SCN1AP35498 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
SCN1AP35498 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
SCN1AP35498 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
SCN1AP35498 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
SCN1AP35498 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms