Protein–RNA interactions for Protein: O95749

GGPS1, Geranylgeranyl pyrophosphate synthase, humanhuman

Predictions only

Length 300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GGPS1O95749 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
GGPS1O95749 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
GGPS1O95749 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC28.78■■■□□ 2.2
GGPS1O95749 CEP120-209ENST00000515110 606 ntTSL 3 BASIC28.78■■■□□ 2.2
GGPS1O95749 CHST11-203ENST00000547956 936 ntTSL 2 BASIC28.77■■■□□ 2.2
GGPS1O95749 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC28.77■■■□□ 2.2
GGPS1O95749 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC28.76■■■□□ 2.2
GGPS1O95749 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
GGPS1O95749 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
GGPS1O95749 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
GGPS1O95749 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC28.75■■■□□ 2.19
GGPS1O95749 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC28.75■■■□□ 2.19
GGPS1O95749 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC28.75■■■□□ 2.19
GGPS1O95749 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC28.74■■■□□ 2.19
GGPS1O95749 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
GGPS1O95749 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
GGPS1O95749 RARRES2P2-201ENST00000394842 485 ntBASIC28.74■■■□□ 2.19
GGPS1O95749 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC28.74■■■□□ 2.19
GGPS1O95749 PEX7-203ENST00000541292 945 ntTSL 5 BASIC28.74■■■□□ 2.19
GGPS1O95749 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
GGPS1O95749 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC28.73■■■□□ 2.19
GGPS1O95749 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
GGPS1O95749 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
GGPS1O95749 RPS2-210ENST00000530225 765 ntTSL 2 BASIC28.73■■■□□ 2.19
GGPS1O95749 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC28.73■■■□□ 2.19
GGPS1O95749 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
GGPS1O95749 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC28.72■■■□□ 2.19
GGPS1O95749 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC28.72■■■□□ 2.19
GGPS1O95749 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC28.72■■■□□ 2.19
GGPS1O95749 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
GGPS1O95749 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC28.71■■■□□ 2.19
GGPS1O95749 AC148477.6-201ENST00000623746 465 ntBASIC28.71■■■□□ 2.19
GGPS1O95749 AC022413.1-201ENST00000624602 984 ntBASIC28.71■■■□□ 2.19
GGPS1O95749 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC28.71■■■□□ 2.19
GGPS1O95749 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
GGPS1O95749 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
GGPS1O95749 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
GGPS1O95749 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
GGPS1O95749 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC28.69■■■□□ 2.18
GGPS1O95749 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC28.69■■■□□ 2.18
GGPS1O95749 AP004833.2-201ENST00000532228 1454 ntBASIC28.69■■■□□ 2.18
GGPS1O95749 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC28.69■■■□□ 2.18
GGPS1O95749 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC28.69■■■□□ 2.18
GGPS1O95749 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
GGPS1O95749 RNF126P1-201ENST00000567452 1320 ntBASIC28.69■■■□□ 2.18
GGPS1O95749 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC28.68■■■□□ 2.18
GGPS1O95749 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC28.67■■■□□ 2.18
GGPS1O95749 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
GGPS1O95749 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
GGPS1O95749 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC28.66■■■□□ 2.18
GGPS1O95749 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC28.65■■■□□ 2.18
GGPS1O95749 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
GGPS1O95749 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC28.65■■■□□ 2.18
GGPS1O95749 MIR219A2-201ENST00000608502 1504 ntBASIC28.64■■■□□ 2.18
GGPS1O95749 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC28.64■■■□□ 2.18
GGPS1O95749 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
GGPS1O95749 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
GGPS1O95749 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC28.63■■■□□ 2.17
GGPS1O95749 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC28.63■■■□□ 2.17
GGPS1O95749 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC28.62■■■□□ 2.17
GGPS1O95749 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
GGPS1O95749 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
GGPS1O95749 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
GGPS1O95749 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
GGPS1O95749 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC28.62■■■□□ 2.17
GGPS1O95749 AC100797.4-201ENST00000631653 1827 ntBASIC28.62■■■□□ 2.17
GGPS1O95749 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC28.61■■■□□ 2.17
GGPS1O95749 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
GGPS1O95749 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC28.59■■■□□ 2.17
GGPS1O95749 ABHD17AP5-201ENST00000580133 923 ntBASIC28.59■■■□□ 2.17
GGPS1O95749 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC28.59■■■□□ 2.17
GGPS1O95749 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC28.58■■■□□ 2.17
GGPS1O95749 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
GGPS1O95749 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC28.57■■■□□ 2.16
GGPS1O95749 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC28.57■■■□□ 2.16
GGPS1O95749 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC28.56■■■□□ 2.16
GGPS1O95749 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC28.56■■■□□ 2.16
GGPS1O95749 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC28.55■■■□□ 2.16
GGPS1O95749 AC060814.1-201ENST00000554326 538 ntBASIC28.55■■■□□ 2.16
GGPS1O95749 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC28.55■■■□□ 2.16
GGPS1O95749 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
GGPS1O95749 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
GGPS1O95749 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
GGPS1O95749 HES4-202ENST00000428771 1040 ntTSL 2 BASIC28.54■■■□□ 2.16
GGPS1O95749 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC28.54■■■□□ 2.16
GGPS1O95749 AL139393.2-201ENST00000608721 2025 ntBASIC28.53■■■□□ 2.16
GGPS1O95749 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC28.53■■■□□ 2.16
GGPS1O95749 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC28.52■■■□□ 2.16
GGPS1O95749 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC28.51■■■□□ 2.16
GGPS1O95749 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
GGPS1O95749 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
GGPS1O95749 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
GGPS1O95749 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
GGPS1O95749 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC28.5■■■□□ 2.15
GGPS1O95749 ABCB10P1-201ENST00000614297 2181 ntBASIC28.5■■■□□ 2.15
GGPS1O95749 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC28.5■■■□□ 2.15
GGPS1O95749 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC28.49■■■□□ 2.15
GGPS1O95749 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC28.49■■■□□ 2.15
GGPS1O95749 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
GGPS1O95749 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC28.49■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms