Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC7.81□□□□□ -1.16
SYNE1Q8NF91 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC7.81□□□□□ -1.16
SYNE1Q8NF91 ST7-205ENST00000393446 2114 ntTSL 5 BASIC7.81□□□□□ -1.16
SYNE1Q8NF91 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
SYNE1Q8NF91 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
SYNE1Q8NF91 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
SYNE1Q8NF91 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC7.81□□□□□ -1.16
SYNE1Q8NF91 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
SYNE1Q8NF91 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 AC010864.1-201ENST00000609407 1511 ntBASIC7.8□□□□□ -1.16
SYNE1Q8NF91 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
SYNE1Q8NF91 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 GPX1-201ENST00000419349 1106 ntBASIC7.79□□□□□ -1.16
SYNE1Q8NF91 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC7.79□□□□□ -1.16
SYNE1Q8NF91 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
SYNE1Q8NF91 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
SYNE1Q8NF91 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
SYNE1Q8NF91 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
SYNE1Q8NF91 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC7.78□□□□□ -1.16
SYNE1Q8NF91 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
SYNE1Q8NF91 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
SYNE1Q8NF91 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
SYNE1Q8NF91 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
SYNE1Q8NF91 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.16
SYNE1Q8NF91 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC7.77□□□□□ -1.16
SYNE1Q8NF91 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
SYNE1Q8NF91 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
SYNE1Q8NF91 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
SYNE1Q8NF91 AL135925.1-201ENST00000605920 1701 ntBASIC7.76□□□□□ -1.17
SYNE1Q8NF91 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC7.76□□□□□ -1.17
SYNE1Q8NF91 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC7.76□□□□□ -1.17
SYNE1Q8NF91 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC7.76□□□□□ -1.17
SYNE1Q8NF91 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC7.76□□□□□ -1.17
SYNE1Q8NF91 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC7.76□□□□□ -1.17
SYNE1Q8NF91 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
SYNE1Q8NF91 AC022413.1-201ENST00000624602 984 ntBASIC7.76□□□□□ -1.17
SYNE1Q8NF91 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 AL033527.3-201ENST00000566366 1196 ntBASIC7.75□□□□□ -1.17
SYNE1Q8NF91 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
SYNE1Q8NF91 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 ST7-202ENST00000323984 2142 ntTSL 5 BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 ST7-207ENST00000393449 2127 ntTSL 5 BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
SYNE1Q8NF91 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC7.74□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms