RNA–Protein interactions for RNA: ENST00000301873.9

LTBP3-201, Transcript of latent transforming growth factor beta binding protein 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LTBP3, Length 4,443 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBP3-201ENST00000301873 DCAF8L2P0C7V8 631 aa36.52■■■■□ 3.44
LTBP3-201ENST00000301873 NISCHQ9Y2I1 1504 aa35.14■■■■□ 3.22
LTBP3-201ENST00000301873 SUPT5HO00267 1087 aaKnown RBP34.99■■■■□ 3.19
LTBP3-201ENST00000301873 SHROOM4Q9ULL8 1493 aa34.4■■■■□ 3.1
LTBP3-201ENST00000301873 EHMT2Q96KQ7 1210 aa33.79■■■■□ 3
LTBP3-201ENST00000301873 FAM9AQ8IZU1 332 aaPredicted RBP32.99■■■□□ 2.87
LTBP3-201ENST00000301873 PCGF6Q9BYE7 350 aa32.76■■■□□ 2.83
LTBP3-201ENST00000301873 TTBK1Q5TCY1 1321 aaPredicted RBP32.6■■■□□ 2.81
LTBP3-201ENST00000301873 APLP2Q06481 763 aa32.58■■■□□ 2.81
LTBP3-201ENST00000301873 TRIM41Q8WV44 630 aa32.24■■■□□ 2.75
LTBP3-201ENST00000301873 RANGAP1P46060 587 aaPredicted RBP32.18■■■□□ 2.74
LTBP3-201ENST00000301873 PELP1Q8IZL8 1130 aaKnown RBP32■■■□□ 2.71
LTBP3-201ENST00000301873 CCER1Q8TC90 406 aaPredicted RBP31.85■■■□□ 2.69
LTBP3-201ENST00000301873 UBTFP17480 764 aaKnown RBP31.77■■■□□ 2.68
LTBP3-201ENST00000301873 ZEB1P37275 1124 aaPredicted RBP31.67■■■□□ 2.66
LTBP3-201ENST00000301873 PPARGC1BQ86YN6 1023 aaKnown RBP31.65■■■□□ 2.66
LTBP3-201ENST00000301873 ATP1B4Q9UN42 357 aaPredicted RBP31.65■■■□□ 2.66
LTBP3-201ENST00000301873 CENPBP07199 599 aaPredicted RBP31.49■■■□□ 2.63
LTBP3-201ENST00000301873 LOC105371045A0A1W2PR82 267 aa31.36■■■□□ 2.61
LTBP3-201ENST00000301873 CHIC1Q5VXU3 224 aa31.28■■■□□ 2.6
LTBP3-201ENST00000301873 TRIM26Q12899 539 aaPredicted RBP31.2■■■□□ 2.59
LTBP3-201ENST00000301873 YTHDC1Q96MU7 727 aaKnown RBP31.16■■■□□ 2.58
LTBP3-201ENST00000301873 HRCP23327 699 aa31.04■■■□□ 2.56
LTBP3-201ENST00000301873 ITGAEP38570 1179 aa30.85■■■□□ 2.53
LTBP3-201ENST00000301873 ERICH6Q7L0X2 663 aa30.76■■■□□ 2.51
LTBP3-201ENST00000301873 HNRNPUL2Q1KMD3 747 aaKnown RBP30.74■■■□□ 2.51
LTBP3-201ENST00000301873 NEFLP07196 543 aa30.69■■■□□ 2.5
LTBP3-201ENST00000301873 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.5■■■□□ 2.47
LTBP3-201ENST00000301873 POLR3GLQ9BT43 218 aa30.32■■■□□ 2.44
LTBP3-201ENST00000301873 PABPN1Q86U42 306 aaKnown RBP eCLIP30.29■■■□□ 2.441e-7■■■□□ 15.7
LTBP3-201ENST00000301873 CNGB1Q14028 1251 aaPredicted RBP30.25■■■□□ 2.43
LTBP3-201ENST00000301873 ABCC9O60706 1549 aa30.18■■■□□ 2.42
LTBP3-201ENST00000301873 MYT1LQ9UL68 1186 aa30.12■■■□□ 2.41
LTBP3-201ENST00000301873 DIEXFQ68CQ4 756 aaKnown RBP30.11■■■□□ 2.41
LTBP3-201ENST00000301873 FAM50AQ14320 339 aaKnown RBP29.93■■■□□ 2.38
LTBP3-201ENST00000301873 NEUROD1Q13562 356 aa29.77■■■□□ 2.36
LTBP3-201ENST00000301873 MYT1Q01538 1121 aa29.7■■■□□ 2.35
LTBP3-201ENST00000301873 TRIM52Q96A61 297 aa29.67■■■□□ 2.34
LTBP3-201ENST00000301873 CSRNP3Q8WYN3 585 aa29.58■■■□□ 2.33
LTBP3-201ENST00000301873 DAXXQ9UER7 740 aaPredicted RBP29.57■■■□□ 2.32
LTBP3-201ENST00000301873 GTF3C3Q9Y5Q9 886 aa29.53■■■□□ 2.32
LTBP3-201ENST00000301873 SLC4A1APQ9BWU0 796 aaKnown RBP29.51■■■□□ 2.32
LTBP3-201ENST00000301873 P3H3Q8IVL6 736 aa29.48■■■□□ 2.31
LTBP3-201ENST00000301873 BCANQ96GW7 911 aa29.43■■■□□ 2.3
LTBP3-201ENST00000301873 ZNF316A6NFI3 1004 aaPredicted RBP29.41■■■□□ 2.3
LTBP3-201ENST00000301873 ZNF326Q5BKZ1 582 aaKnown RBP29.4■■■□□ 2.3
LTBP3-201ENST00000301873 FBLN2P98095 1184 aa29.36■■■□□ 2.29
LTBP3-201ENST00000301873 ARID3CA6NKF2 412 aa29.33■■■□□ 2.29
LTBP3-201ENST00000301873 ANP32CO43423 234 aa29.27■■■□□ 2.28
LTBP3-201ENST00000301873 CLSPNQ9HAW4 1339 aa29.2■■■□□ 2.26
LTBP3-201ENST00000301873 ACIN1Q9UKV3 1341 aaKnown RBP29.09■■■□□ 2.25
LTBP3-201ENST00000301873 ZCCHC6Q5VYS8 1495 aaKnown RBP29.06■■■□□ 2.24
LTBP3-201ENST00000301873 SCRIBQ14160 1630 aa29.03■■■□□ 2.24
LTBP3-201ENST00000301873 RTL5Q5HYW3 569 aaPredicted RBP29■■■□□ 2.23
LTBP3-201ENST00000301873 ZNF777Q9ULD5 760 aaPredicted RBP28.96■■■□□ 2.23
LTBP3-201ENST00000301873 CDK11AQ9UQ88 783 aaPredicted RBP28.86■■■□□ 2.21
LTBP3-201ENST00000301873 DCAF1Q9Y4B6 1507 aa28.84■■■□□ 2.21
LTBP3-201ENST00000301873 DDX10Q13206 875 aaKnown RBP28.77■■■□□ 2.2
LTBP3-201ENST00000301873 MYO15BQ96JP2 1530 aa28.72■■■□□ 2.19
LTBP3-201ENST00000301873 TONSLQ96HA7 1378 aa28.66■■■□□ 2.18
LTBP3-201ENST00000301873 CHIC2Q9UKJ5 165 aa28.65■■■□□ 2.18
LTBP3-201ENST00000301873 BCL11AQ9H165 835 aa28.65■■■□□ 2.18
LTBP3-201ENST00000301873 FKBP8Q14318 412 aa28.61■■■□□ 2.17
LTBP3-201ENST00000301873 HNRNPUQ00839 825 aaKnown RBP eCLIP28.57■■■□□ 2.16
LTBP3-201ENST00000301873 CANXP27824 592 aaKnown RBP28.53■■■□□ 2.16
LTBP3-201ENST00000301873 FAM9BQ8IZU0 186 aa28.52■■■□□ 2.16
LTBP3-201ENST00000301873 HIRIP3Q9BW71 556 aaPredicted RBP28.51■■■□□ 2.15
LTBP3-201ENST00000301873 MIER1Q8N108 512 aa28.48■■■□□ 2.15
LTBP3-201ENST00000301873 SALL2Q9Y467 1007 aaPredicted RBP28.46■■■□□ 2.15
LTBP3-201ENST00000301873 RSF1Q96T23 1441 aaPredicted RBP28.45■■■□□ 2.15
LTBP3-201ENST00000301873 ZBTB47Q9UFB7 747 aaPredicted RBP28.44■■■□□ 2.14
LTBP3-201ENST00000301873 SLC24A1O60721 1099 aa28.43■■■□□ 2.14
LTBP3-201ENST00000301873 CLIP1P30622 1438 aa28.41■■■□□ 2.14
LTBP3-201ENST00000301873 CHGAP10645 457 aaKnown RBP28.4■■■□□ 2.14
LTBP3-201ENST00000301873 NPM2Q86SE8 214 aaKnown RBP28.37■■■□□ 2.13
LTBP3-201ENST00000301873 NEFMP07197 916 aa28.35■■■□□ 2.13
LTBP3-201ENST00000301873 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.34■■■□□ 2.131e-6■□□□□ 10.2
LTBP3-201ENST00000301873 MTUS2Q5JR59 1369 aa28.32■■■□□ 2.12
LTBP3-201ENST00000301873 SCAF1Q9H7N4 1312 aaKnown RBP28.31■■■□□ 2.12
LTBP3-201ENST00000301873 ANP32AP39687 249 aaKnown RBP28.3■■■□□ 2.12
LTBP3-201ENST00000301873 KDM2AQ9Y2K7 1162 aa28.29■■■□□ 2.12
LTBP3-201ENST00000301873 TMC1Q8TDI8 760 aa28.25■■■□□ 2.11
LTBP3-201ENST00000301873 RRP7BPQ9NSQ0 103 aa28.23■■■□□ 2.11
LTBP3-201ENST00000301873 TSPY4P0CV99 314 aa28.23■■■□□ 2.11
LTBP3-201ENST00000301873 TSPY10P0CW01 314 aa28.23■■■□□ 2.11
LTBP3-201ENST00000301873 CEP162Q5TB80 1403 aa28.23■■■□□ 2.11
LTBP3-201ENST00000301873 MRS2Q9HD23 443 aa28.22■■■□□ 2.11
LTBP3-201ENST00000301873 CCDC180Q9P1Z9 1646 aa28.17■■■□□ 2.1
LTBP3-201ENST00000301873 IRX6P78412 446 aaPredicted RBP28.15■■■□□ 2.1
LTBP3-201ENST00000301873 CHMP7Q8WUX9 453 aaPredicted RBP28.11■■■□□ 2.09
LTBP3-201ENST00000301873 STAG3Q9UJ98 1225 aa28.1■■■□□ 2.09
LTBP3-201ENST00000301873 CCDC136Q96JN2 1154 aa28.09■■■□□ 2.09
LTBP3-201ENST00000301873 NPM1P06748 294 aaKnown RBP eCLIP28.08■■■□□ 2.09
LTBP3-201ENST00000301873 WRNQ14191 1432 aaPredicted RBP eCLIP28.08■■■□□ 2.09
LTBP3-201ENST00000301873 ESF1Q9H501 851 aaKnown RBP28.07■■■□□ 2.08
LTBP3-201ENST00000301873 EIF4G2P78344 907 aaKnown RBP eCLIP28.06■■■□□ 2.08
LTBP3-201ENST00000301873 GOLGA3Q08378 1498 aa28.04■■■□□ 2.08
LTBP3-201ENST00000301873 EEA1Q15075 1411 aa28.04■■■□□ 2.08
LTBP3-201ENST00000301873 PLPPR3Q6T4P5 718 aa28.04■■■□□ 2.08
LTBP3-201ENST00000301873 SENP3-EIF4A1A0A087X0R7 540 aa28■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms