Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
HNF4AP41235 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC24.79■■□□□ 1.56
HNF4AP41235 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC24.79■■□□□ 1.56
HNF4AP41235 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC24.79■■□□□ 1.56
HNF4AP41235 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC24.79■■□□□ 1.56
HNF4AP41235 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC24.78■■□□□ 1.56
HNF4AP41235 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC24.77■■□□□ 1.56
HNF4AP41235 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC24.77■■□□□ 1.56
HNF4AP41235 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC24.77■■□□□ 1.56
HNF4AP41235 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
HNF4AP41235 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC24.77■■□□□ 1.56
HNF4AP41235 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC24.77■■□□□ 1.56
HNF4AP41235 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
HNF4AP41235 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
HNF4AP41235 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
HNF4AP41235 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC24.76■■□□□ 1.55
HNF4AP41235 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
HNF4AP41235 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC24.76■■□□□ 1.55
HNF4AP41235 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
HNF4AP41235 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC24.76■■□□□ 1.55
HNF4AP41235 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
HNF4AP41235 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
HNF4AP41235 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC24.74■■□□□ 1.55
HNF4AP41235 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
HNF4AP41235 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC24.74■■□□□ 1.55
HNF4AP41235 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC24.74■■□□□ 1.55
HNF4AP41235 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
HNF4AP41235 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
HNF4AP41235 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
HNF4AP41235 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
HNF4AP41235 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC24.73■■□□□ 1.55
HNF4AP41235 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
HNF4AP41235 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
HNF4AP41235 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
HNF4AP41235 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
HNF4AP41235 PROC-203ENST00000409048 1586 ntTSL 5 BASIC24.71■■□□□ 1.55
HNF4AP41235 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC24.7■■□□□ 1.54
HNF4AP41235 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
HNF4AP41235 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
HNF4AP41235 DUX4L29-201ENST00000425409 679 ntBASIC24.7■■□□□ 1.54
HNF4AP41235 AC135983.2-203ENST00000454486 1613 ntBASIC24.7■■□□□ 1.54
HNF4AP41235 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
HNF4AP41235 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
HNF4AP41235 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
HNF4AP41235 AC021231.2-201ENST00000594613 730 ntBASIC24.69■■□□□ 1.54
HNF4AP41235 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
HNF4AP41235 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC24.69■■□□□ 1.54
HNF4AP41235 LINC00273-201ENST00000539813 1452 ntBASIC24.69■■□□□ 1.54
HNF4AP41235 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
HNF4AP41235 AC100797.4-201ENST00000631653 1827 ntBASIC24.68■■□□□ 1.54
HNF4AP41235 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC24.68■■□□□ 1.54
HNF4AP41235 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
HNF4AP41235 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC24.68■■□□□ 1.54
HNF4AP41235 MEST-211ENST00000437945 1455 ntTSL 5 BASIC24.67■■□□□ 1.54
HNF4AP41235 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC24.67■■□□□ 1.54
HNF4AP41235 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC24.66■■□□□ 1.54
HNF4AP41235 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
HNF4AP41235 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
HNF4AP41235 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
HNF4AP41235 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
HNF4AP41235 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
HNF4AP41235 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC24.66■■□□□ 1.54
HNF4AP41235 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC24.66■■□□□ 1.54
HNF4AP41235 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
HNF4AP41235 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC24.65■■□□□ 1.54
HNF4AP41235 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC24.65■■□□□ 1.54
HNF4AP41235 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
HNF4AP41235 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
HNF4AP41235 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
HNF4AP41235 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
HNF4AP41235 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC24.64■■□□□ 1.54
HNF4AP41235 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC24.64■■□□□ 1.54
HNF4AP41235 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC24.64■■□□□ 1.54
HNF4AP41235 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC24.64■■□□□ 1.53
HNF4AP41235 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC24.63■■□□□ 1.53
HNF4AP41235 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
HNF4AP41235 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC24.63■■□□□ 1.53
HNF4AP41235 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC24.63■■□□□ 1.53
HNF4AP41235 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
HNF4AP41235 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC24.63■■□□□ 1.53
HNF4AP41235 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
HNF4AP41235 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC24.63■■□□□ 1.53
HNF4AP41235 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
HNF4AP41235 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC24.62■■□□□ 1.53
HNF4AP41235 WHAMMP2-203ENST00000563942 1603 ntBASIC24.62■■□□□ 1.53
HNF4AP41235 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
HNF4AP41235 HGH1-207ENST00000628266 258 ntTSL 5 BASIC24.61■■□□□ 1.53
HNF4AP41235 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
HNF4AP41235 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
HNF4AP41235 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
HNF4AP41235 CALM3-209ENST00000597743 577 ntTSL 4 BASIC24.6■■□□□ 1.53
HNF4AP41235 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC24.6■■□□□ 1.53
HNF4AP41235 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
HNF4AP41235 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC24.59■■□□□ 1.53
HNF4AP41235 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
HNF4AP41235 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC24.59■■□□□ 1.53
HNF4AP41235 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
HNF4AP41235 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC24.59■■□□□ 1.53
HNF4AP41235 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC24.59■■□□□ 1.53
HNF4AP41235 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms