Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
CIITAP33076 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC29.19■■■□□ 2.26
CIITAP33076 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC29.19■■■□□ 2.26
CIITAP33076 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
CIITAP33076 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC29.19■■■□□ 2.26
CIITAP33076 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC29.18■■■□□ 2.26
CIITAP33076 AGPS-202ENST00000409888 815 ntTSL 4 BASIC29.18■■■□□ 2.26
CIITAP33076 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC29.18■■■□□ 2.26
CIITAP33076 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
CIITAP33076 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC29.18■■■□□ 2.26
CIITAP33076 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC29.17■■■□□ 2.26
CIITAP33076 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
CIITAP33076 CHML-204ENST00000638121 920 ntTSL 2 BASIC29.17■■■□□ 2.26
CIITAP33076 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
CIITAP33076 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC29.16■■■□□ 2.26
CIITAP33076 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
CIITAP33076 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
CIITAP33076 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
CIITAP33076 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
CIITAP33076 MIR3648-2-201ENST00000581792 180 ntBASIC29.15■■■□□ 2.26
CIITAP33076 MIR3648-1-201ENST00000615959 180 ntBASIC29.15■■■□□ 2.26
CIITAP33076 CR559946.2-201ENST00000623684 991 ntBASIC29.15■■■□□ 2.26
CIITAP33076 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
CIITAP33076 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC29.15■■■□□ 2.26
CIITAP33076 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
CIITAP33076 MEST-211ENST00000437945 1455 ntTSL 5 BASIC29.14■■■□□ 2.26
CIITAP33076 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC29.13■■■□□ 2.25
CIITAP33076 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC29.13■■■□□ 2.25
CIITAP33076 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC29.13■■■□□ 2.25
CIITAP33076 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC29.13■■■□□ 2.25
CIITAP33076 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
CIITAP33076 GDI1-215ENST00000630693 786 ntTSL 4 BASIC29.12■■■□□ 2.25
CIITAP33076 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC29.11■■■□□ 2.25
CIITAP33076 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC29.11■■■□□ 2.25
CIITAP33076 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC29.11■■■□□ 2.25
CIITAP33076 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
CIITAP33076 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
CIITAP33076 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC29.1■■■□□ 2.25
CIITAP33076 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
CIITAP33076 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC29.1■■■□□ 2.25
CIITAP33076 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC29.1■■■□□ 2.25
CIITAP33076 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
CIITAP33076 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
CIITAP33076 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC29.09■■■□□ 2.25
CIITAP33076 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC29.09■■■□□ 2.25
CIITAP33076 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC29.08■■■□□ 2.25
CIITAP33076 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
CIITAP33076 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC29.08■■■□□ 2.25
CIITAP33076 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC29.07■■■□□ 2.24
CIITAP33076 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC29.07■■■□□ 2.24
CIITAP33076 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
CIITAP33076 AC016575.1-201ENST00000607026 382 ntBASIC29.06■■■□□ 2.24
CIITAP33076 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC29.05■■■□□ 2.24
CIITAP33076 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC29.04■■■□□ 2.24
CIITAP33076 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
CIITAP33076 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC29.04■■■□□ 2.24
CIITAP33076 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC29.04■■■□□ 2.24
CIITAP33076 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC29.04■■■□□ 2.24
CIITAP33076 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
CIITAP33076 HES6-205ENST00000409356 528 ntTSL 2 BASIC29.03■■■□□ 2.24
CIITAP33076 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC29.03■■■□□ 2.24
CIITAP33076 ABCB10P3-201ENST00000561950 2166 ntBASIC29.02■■■□□ 2.24
CIITAP33076 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC29.02■■■□□ 2.24
CIITAP33076 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC29.02■■■□□ 2.24
CIITAP33076 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC29.02■■■□□ 2.24
CIITAP33076 AC100797.4-201ENST00000631653 1827 ntBASIC29.01■■■□□ 2.24
CIITAP33076 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC29.01■■■□□ 2.23
CIITAP33076 RPS2-202ENST00000526522 924 ntTSL 2 BASIC29.01■■■□□ 2.23
CIITAP33076 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC29.01■■■□□ 2.23
CIITAP33076 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
CIITAP33076 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC29■■■□□ 2.23
CIITAP33076 MIR639-201ENST00000384974 98 ntBASIC29■■■□□ 2.23
CIITAP33076 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC29■■■□□ 2.23
CIITAP33076 MBP-237ENST00000579129 1052 ntTSL 5 BASIC29■■■□□ 2.23
CIITAP33076 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC29■■■□□ 2.23
CIITAP33076 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
CIITAP33076 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC28.99■■■□□ 2.23
CIITAP33076 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
CIITAP33076 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC28.99■■■□□ 2.23
CIITAP33076 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
CIITAP33076 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
CIITAP33076 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC28.98■■■□□ 2.23
CIITAP33076 HLA-V-202ENST00000446817 847 ntBASIC28.97■■■□□ 2.23
CIITAP33076 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC28.97■■■□□ 2.23
CIITAP33076 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
CIITAP33076 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
CIITAP33076 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
CIITAP33076 AC110285.7-201ENST00000624417 1536 ntBASIC28.96■■■□□ 2.23
CIITAP33076 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC28.96■■■□□ 2.23
CIITAP33076 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC28.96■■■□□ 2.23
CIITAP33076 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
CIITAP33076 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC28.94■■■□□ 2.22
CIITAP33076 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC28.94■■■□□ 2.22
CIITAP33076 PEX7-203ENST00000541292 945 ntTSL 5 BASIC28.94■■■□□ 2.22
CIITAP33076 CHST11-202ENST00000546689 756 ntTSL 2 BASIC28.94■■■□□ 2.22
CIITAP33076 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC28.93■■■□□ 2.22
CIITAP33076 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC28.91■■■□□ 2.22
CIITAP33076 AC139426.1-201ENST00000568218 2529 ntBASIC28.91■■■□□ 2.22
CIITAP33076 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC28.91■■■□□ 2.22
CIITAP33076 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms