Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
TRAV1-1A0A0B4J248 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAV1-1A0A0B4J248 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAV1-1A0A0B4J248 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV1-1A0A0B4J248 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
TRAV1-1A0A0B4J248 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
TRAV1-1A0A0B4J248 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
TRAV1-1A0A0B4J248 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV1-1A0A0B4J248 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV1-1A0A0B4J248 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
TRAV1-1A0A0B4J248 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC20.17■□□□□ 0.82
TRAV1-1A0A0B4J248 AC020928.2-201ENST00000588717 2197 ntBASIC20.17■□□□□ 0.82
TRAV1-1A0A0B4J248 AP004833.2-201ENST00000532228 1454 ntBASIC20.17■□□□□ 0.82
TRAV1-1A0A0B4J248 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAV1-1A0A0B4J248 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV1-1A0A0B4J248 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
TRAV1-1A0A0B4J248 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV1-1A0A0B4J248 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV1-1A0A0B4J248 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC20.15■□□□□ 0.82
TRAV1-1A0A0B4J248 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TRAV1-1A0A0B4J248 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAV1-1A0A0B4J248 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAV1-1A0A0B4J248 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TRAV1-1A0A0B4J248 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC20.15■□□□□ 0.82
TRAV1-1A0A0B4J248 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV1-1A0A0B4J248 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV1-1A0A0B4J248 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV1-1A0A0B4J248 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV1-1A0A0B4J248 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV1-1A0A0B4J248 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC20.13■□□□□ 0.81
TRAV1-1A0A0B4J248 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV1-1A0A0B4J248 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC20.12■□□□□ 0.81
TRAV1-1A0A0B4J248 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV1-1A0A0B4J248 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV1-1A0A0B4J248 AC145676.1-201ENST00000514988 2004 ntBASIC20.12■□□□□ 0.81
TRAV1-1A0A0B4J248 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.12■□□□□ 0.81
TRAV1-1A0A0B4J248 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRAV1-1A0A0B4J248 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
TRAV1-1A0A0B4J248 AC093323.1-202ENST00000635031 2045 ntBASIC20.11■□□□□ 0.81
TRAV1-1A0A0B4J248 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRAV1-1A0A0B4J248 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRAV1-1A0A0B4J248 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC20.11■□□□□ 0.81
TRAV1-1A0A0B4J248 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRAV1-1A0A0B4J248 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAV1-1A0A0B4J248 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
TRAV1-1A0A0B4J248 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV1-1A0A0B4J248 AC010864.1-201ENST00000609407 1511 ntBASIC20.09■□□□□ 0.81
TRAV1-1A0A0B4J248 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
TRAV1-1A0A0B4J248 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV1-1A0A0B4J248 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC20.09■□□□□ 0.81
TRAV1-1A0A0B4J248 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV1-1A0A0B4J248 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV1-1A0A0B4J248 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TRAV1-1A0A0B4J248 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRAV1-1A0A0B4J248 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.08■□□□□ 0.81
TRAV1-1A0A0B4J248 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC20.08■□□□□ 0.8
TRAV1-1A0A0B4J248 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRAV1-1A0A0B4J248 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
TRAV1-1A0A0B4J248 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.07■□□□□ 0.8
TRAV1-1A0A0B4J248 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAV1-1A0A0B4J248 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
TRAV1-1A0A0B4J248 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAV1-1A0A0B4J248 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC20.07■□□□□ 0.8
TRAV1-1A0A0B4J248 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRAV1-1A0A0B4J248 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC20.06■□□□□ 0.8
TRAV1-1A0A0B4J248 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV1-1A0A0B4J248 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV1-1A0A0B4J248 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV1-1A0A0B4J248 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC20.05■□□□□ 0.8
TRAV1-1A0A0B4J248 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
TRAV1-1A0A0B4J248 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC20.05■□□□□ 0.8
TRAV1-1A0A0B4J248 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV1-1A0A0B4J248 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV1-1A0A0B4J248 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAV1-1A0A0B4J248 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC20.04■□□□□ 0.8
TRAV1-1A0A0B4J248 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC20.03■□□□□ 0.8
TRAV1-1A0A0B4J248 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
TRAV1-1A0A0B4J248 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAV1-1A0A0B4J248 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAV1-1A0A0B4J248 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC20.03■□□□□ 0.8
TRAV1-1A0A0B4J248 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAV1-1A0A0B4J248 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
TRAV1-1A0A0B4J248 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAV1-1A0A0B4J248 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAV1-1A0A0B4J248 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC20.02■□□□□ 0.8
TRAV1-1A0A0B4J248 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRAV1-1A0A0B4J248 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
TRAV1-1A0A0B4J248 EBPL-203ENST00000378270 579 ntTSL 2 BASIC20.01■□□□□ 0.79
TRAV1-1A0A0B4J248 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV1-1A0A0B4J248 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV1-1A0A0B4J248 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV1-1A0A0B4J248 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
TRAV1-1A0A0B4J248 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC20.01■□□□□ 0.79
TRAV1-1A0A0B4J248 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV1-1A0A0B4J248 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20■□□□□ 0.79
TRAV1-1A0A0B4J248 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRAV1-1A0A0B4J248 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20■□□□□ 0.79
TRAV1-1A0A0B4J248 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV1-1A0A0B4J248 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
TRAV1-1A0A0B4J248 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms