Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC25.55■■□□□ 1.68
VRK3Q8IV63 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC25.54■■□□□ 1.68
VRK3Q8IV63 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
VRK3Q8IV63 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
VRK3Q8IV63 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
VRK3Q8IV63 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC25.52■■□□□ 1.68
VRK3Q8IV63 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC25.51■■□□□ 1.67
VRK3Q8IV63 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC25.5■■□□□ 1.67
VRK3Q8IV63 AL139393.2-201ENST00000608721 2025 ntBASIC25.5■■□□□ 1.67
VRK3Q8IV63 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
VRK3Q8IV63 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC25.48■■□□□ 1.67
VRK3Q8IV63 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
VRK3Q8IV63 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
VRK3Q8IV63 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC25.47■■□□□ 1.67
VRK3Q8IV63 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC25.47■■□□□ 1.67
VRK3Q8IV63 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
VRK3Q8IV63 BOD1-206ENST00000480951 814 ntTSL 2 BASIC25.47■■□□□ 1.67
VRK3Q8IV63 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
VRK3Q8IV63 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
VRK3Q8IV63 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
VRK3Q8IV63 CIB2-204ENST00000557846 934 ntTSL 3 BASIC25.46■■□□□ 1.67
VRK3Q8IV63 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
VRK3Q8IV63 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC25.46■■□□□ 1.67
VRK3Q8IV63 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
VRK3Q8IV63 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
VRK3Q8IV63 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC25.44■■□□□ 1.66
VRK3Q8IV63 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
VRK3Q8IV63 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC25.43■■□□□ 1.66
VRK3Q8IV63 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC25.43■■□□□ 1.66
VRK3Q8IV63 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC25.43■■□□□ 1.66
VRK3Q8IV63 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC25.42■■□□□ 1.66
VRK3Q8IV63 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC25.42■■□□□ 1.66
VRK3Q8IV63 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC25.42■■□□□ 1.66
VRK3Q8IV63 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC25.41■■□□□ 1.66
VRK3Q8IV63 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
VRK3Q8IV63 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
VRK3Q8IV63 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
VRK3Q8IV63 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC25.4■■□□□ 1.66
VRK3Q8IV63 EI24-212ENST00000615917 1407 ntTSL 2 BASIC25.39■■□□□ 1.66
VRK3Q8IV63 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
VRK3Q8IV63 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC25.39■■□□□ 1.66
VRK3Q8IV63 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
VRK3Q8IV63 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
VRK3Q8IV63 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC25.38■■□□□ 1.65
VRK3Q8IV63 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
VRK3Q8IV63 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
VRK3Q8IV63 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC25.37■■□□□ 1.65
VRK3Q8IV63 AC021231.2-201ENST00000594613 730 ntBASIC25.37■■□□□ 1.65
VRK3Q8IV63 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
VRK3Q8IV63 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
VRK3Q8IV63 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC25.36■■□□□ 1.65
VRK3Q8IV63 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
VRK3Q8IV63 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
VRK3Q8IV63 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC25.36■■□□□ 1.65
VRK3Q8IV63 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
VRK3Q8IV63 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC25.35■■□□□ 1.65
VRK3Q8IV63 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC25.35■■□□□ 1.65
VRK3Q8IV63 SHF-206ENST00000560471 2499 ntTSL 5 BASIC25.35■■□□□ 1.65
VRK3Q8IV63 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
VRK3Q8IV63 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
VRK3Q8IV63 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
VRK3Q8IV63 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.64
VRK3Q8IV63 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
VRK3Q8IV63 DUX4L29-201ENST00000425409 679 ntBASIC25.32■■□□□ 1.64
VRK3Q8IV63 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
VRK3Q8IV63 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC25.3■■□□□ 1.64
VRK3Q8IV63 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
VRK3Q8IV63 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
VRK3Q8IV63 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
VRK3Q8IV63 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC25.29■■□□□ 1.64
VRK3Q8IV63 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
VRK3Q8IV63 HGH1-207ENST00000628266 258 ntTSL 5 BASIC25.29■■□□□ 1.64
VRK3Q8IV63 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
VRK3Q8IV63 LINC00273-201ENST00000539813 1452 ntBASIC25.28■■□□□ 1.64
VRK3Q8IV63 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC25.28■■□□□ 1.64
VRK3Q8IV63 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
VRK3Q8IV63 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
VRK3Q8IV63 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
VRK3Q8IV63 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
VRK3Q8IV63 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC25.28■■□□□ 1.64
VRK3Q8IV63 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC25.28■■□□□ 1.64
VRK3Q8IV63 AC135983.2-203ENST00000454486 1613 ntBASIC25.27■■□□□ 1.64
VRK3Q8IV63 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
VRK3Q8IV63 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC25.27■■□□□ 1.64
VRK3Q8IV63 AP004833.2-201ENST00000532228 1454 ntBASIC25.27■■□□□ 1.64
VRK3Q8IV63 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC25.27■■□□□ 1.64
VRK3Q8IV63 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
VRK3Q8IV63 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
VRK3Q8IV63 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC25.26■■□□□ 1.63
VRK3Q8IV63 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC25.26■■□□□ 1.63
VRK3Q8IV63 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
VRK3Q8IV63 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC25.26■■□□□ 1.63
VRK3Q8IV63 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC25.26■■□□□ 1.63
VRK3Q8IV63 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC25.26■■□□□ 1.63
VRK3Q8IV63 CALM3-209ENST00000597743 577 ntTSL 4 BASIC25.26■■□□□ 1.63
VRK3Q8IV63 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
VRK3Q8IV63 WHAMMP2-203ENST00000563942 1603 ntBASIC25.26■■□□□ 1.63
VRK3Q8IV63 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC25.25■■□□□ 1.63
VRK3Q8IV63 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
VRK3Q8IV63 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms