Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC21.74■■□□□ 1.07
CSPG4Q6UVK1 CHST11-202ENST00000546689 756 ntTSL 2 BASIC21.74■■□□□ 1.07
CSPG4Q6UVK1 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CSPG4Q6UVK1 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
CSPG4Q6UVK1 CEP120-209ENST00000515110 606 ntTSL 3 BASIC21.73■■□□□ 1.07
CSPG4Q6UVK1 AC012354.3-201ENST00000623734 483 ntBASIC21.73■■□□□ 1.07
CSPG4Q6UVK1 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CSPG4Q6UVK1 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CSPG4Q6UVK1 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CSPG4Q6UVK1 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CSPG4Q6UVK1 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC21.71■■□□□ 1.07
CSPG4Q6UVK1 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CSPG4Q6UVK1 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC21.71■■□□□ 1.07
CSPG4Q6UVK1 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CSPG4Q6UVK1 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
CSPG4Q6UVK1 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CSPG4Q6UVK1 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CSPG4Q6UVK1 AC019069.1-201ENST00000610008 1333 ntBASIC21.7■■□□□ 1.06
CSPG4Q6UVK1 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CSPG4Q6UVK1 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC21.69■■□□□ 1.06
CSPG4Q6UVK1 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CSPG4Q6UVK1 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.69■■□□□ 1.06
CSPG4Q6UVK1 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CSPG4Q6UVK1 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC21.68■■□□□ 1.06
CSPG4Q6UVK1 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC21.68■■□□□ 1.06
CSPG4Q6UVK1 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
CSPG4Q6UVK1 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC21.68■■□□□ 1.06
CSPG4Q6UVK1 AC018358.1-201ENST00000631079 1402 ntBASIC21.68■■□□□ 1.06
CSPG4Q6UVK1 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CSPG4Q6UVK1 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CSPG4Q6UVK1 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
CSPG4Q6UVK1 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CSPG4Q6UVK1 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CSPG4Q6UVK1 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.63■■□□□ 1.05
CSPG4Q6UVK1 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CSPG4Q6UVK1 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CSPG4Q6UVK1 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CSPG4Q6UVK1 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.62■■□□□ 1.05
CSPG4Q6UVK1 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC21.62■■□□□ 1.05
CSPG4Q6UVK1 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
CSPG4Q6UVK1 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CSPG4Q6UVK1 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CSPG4Q6UVK1 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CSPG4Q6UVK1 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CSPG4Q6UVK1 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CSPG4Q6UVK1 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CSPG4Q6UVK1 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CSPG4Q6UVK1 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
CSPG4Q6UVK1 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CSPG4Q6UVK1 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CSPG4Q6UVK1 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
CSPG4Q6UVK1 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CSPG4Q6UVK1 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.57■■□□□ 1.04
CSPG4Q6UVK1 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CSPG4Q6UVK1 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.57■■□□□ 1.04
CSPG4Q6UVK1 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
CSPG4Q6UVK1 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CSPG4Q6UVK1 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CSPG4Q6UVK1 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CSPG4Q6UVK1 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CSPG4Q6UVK1 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21.56■■□□□ 1.04
CSPG4Q6UVK1 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21.56■■□□□ 1.04
CSPG4Q6UVK1 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
CSPG4Q6UVK1 AL033527.3-201ENST00000566366 1196 ntBASIC21.56■■□□□ 1.04
CSPG4Q6UVK1 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CSPG4Q6UVK1 AC022413.1-201ENST00000624602 984 ntBASIC21.56■■□□□ 1.04
CSPG4Q6UVK1 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
CSPG4Q6UVK1 LINC00273-201ENST00000539813 1452 ntBASIC21.55■■□□□ 1.04
CSPG4Q6UVK1 HES4-202ENST00000428771 1040 ntTSL 2 BASIC21.55■■□□□ 1.04
CSPG4Q6UVK1 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC21.55■■□□□ 1.04
CSPG4Q6UVK1 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CSPG4Q6UVK1 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
CSPG4Q6UVK1 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
CSPG4Q6UVK1 AC008813.1-201ENST00000536597 885 ntBASIC21.54■■□□□ 1.04
CSPG4Q6UVK1 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC21.54■■□□□ 1.04
CSPG4Q6UVK1 TSPY13P-201ENST00000338964 914 ntBASIC21.54■■□□□ 1.04
CSPG4Q6UVK1 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CSPG4Q6UVK1 AL592295.1-201ENST00000400984 884 ntBASIC21.54■■□□□ 1.04
CSPG4Q6UVK1 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CSPG4Q6UVK1 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.03
CSPG4Q6UVK1 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CSPG4Q6UVK1 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CSPG4Q6UVK1 RARRES2P1-201ENST00000474487 481 ntBASIC21.51■■□□□ 1.03
CSPG4Q6UVK1 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.5■■□□□ 1.03
CSPG4Q6UVK1 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CSPG4Q6UVK1 HYI-213ENST00000583037 1322 ntTSL 5 BASIC21.5■■□□□ 1.03
CSPG4Q6UVK1 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CSPG4Q6UVK1 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CSPG4Q6UVK1 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC21.47■■□□□ 1.03
CSPG4Q6UVK1 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CSPG4Q6UVK1 KRT18P60-201ENST00000312876 1297 ntBASIC21.47■■□□□ 1.03
CSPG4Q6UVK1 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC21.47■■□□□ 1.03
CSPG4Q6UVK1 AC120057.4-201ENST00000624722 1615 ntBASIC21.47■■□□□ 1.03
CSPG4Q6UVK1 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CSPG4Q6UVK1 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.46■■□□□ 1.03
CSPG4Q6UVK1 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC21.46■■□□□ 1.03
CSPG4Q6UVK1 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC21.45■■□□□ 1.02
CSPG4Q6UVK1 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CSPG4Q6UVK1 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CSPG4Q6UVK1 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms