Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
PDLIM3Q53GG5 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PDLIM3Q53GG5 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PDLIM3Q53GG5 RPS2-202ENST00000526522 924 ntTSL 2 BASIC21.21■□□□□ 0.99
PDLIM3Q53GG5 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC21.21■□□□□ 0.99
PDLIM3Q53GG5 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PDLIM3Q53GG5 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PDLIM3Q53GG5 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.19■□□□□ 0.98
PDLIM3Q53GG5 EBPL-202ENST00000378268 680 ntTSL 3 BASIC21.19■□□□□ 0.98
PDLIM3Q53GG5 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PDLIM3Q53GG5 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
PDLIM3Q53GG5 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PDLIM3Q53GG5 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PDLIM3Q53GG5 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PDLIM3Q53GG5 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PDLIM3Q53GG5 AC142086.6-201ENST00000621154 1765 ntBASIC21.18■□□□□ 0.98
PDLIM3Q53GG5 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PDLIM3Q53GG5 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC21.17■□□□□ 0.98
PDLIM3Q53GG5 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PDLIM3Q53GG5 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PDLIM3Q53GG5 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PDLIM3Q53GG5 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PDLIM3Q53GG5 HSD17B1P1-201ENST00000590052 955 ntBASIC21.16■□□□□ 0.98
PDLIM3Q53GG5 WASH5P-204ENST00000632292 975 ntBASIC21.16■□□□□ 0.98
PDLIM3Q53GG5 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
PDLIM3Q53GG5 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PDLIM3Q53GG5 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC21.15■□□□□ 0.98
PDLIM3Q53GG5 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PDLIM3Q53GG5 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
PDLIM3Q53GG5 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC21.15■□□□□ 0.98
PDLIM3Q53GG5 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PDLIM3Q53GG5 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PDLIM3Q53GG5 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
PDLIM3Q53GG5 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
PDLIM3Q53GG5 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PDLIM3Q53GG5 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC21.13■□□□□ 0.97
PDLIM3Q53GG5 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PDLIM3Q53GG5 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC21.13■□□□□ 0.97
PDLIM3Q53GG5 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
PDLIM3Q53GG5 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.13■□□□□ 0.97
PDLIM3Q53GG5 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC21.13■□□□□ 0.97
PDLIM3Q53GG5 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PDLIM3Q53GG5 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PDLIM3Q53GG5 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PDLIM3Q53GG5 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC21.12■□□□□ 0.97
PDLIM3Q53GG5 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
PDLIM3Q53GG5 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC21.11■□□□□ 0.97
PDLIM3Q53GG5 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC21.11■□□□□ 0.97
PDLIM3Q53GG5 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PDLIM3Q53GG5 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PDLIM3Q53GG5 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PDLIM3Q53GG5 BOD1-206ENST00000480951 814 ntTSL 2 BASIC21.1■□□□□ 0.97
PDLIM3Q53GG5 CHML-205ENST00000638160 705 ntTSL 3 BASIC21.1■□□□□ 0.97
PDLIM3Q53GG5 AL139393.2-201ENST00000608721 2025 ntBASIC21.1■□□□□ 0.97
PDLIM3Q53GG5 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
PDLIM3Q53GG5 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PDLIM3Q53GG5 MIR639-201ENST00000384974 98 ntBASIC21.09■□□□□ 0.97
PDLIM3Q53GG5 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PDLIM3Q53GG5 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC21.08■□□□□ 0.97
PDLIM3Q53GG5 AL133380.1-201ENST00000506013 324 ntBASIC21.08■□□□□ 0.97
PDLIM3Q53GG5 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PDLIM3Q53GG5 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PDLIM3Q53GG5 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDLIM3Q53GG5 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDLIM3Q53GG5 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PDLIM3Q53GG5 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDLIM3Q53GG5 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
PDLIM3Q53GG5 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC21.06■□□□□ 0.96
PDLIM3Q53GG5 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC21.06■□□□□ 0.96
PDLIM3Q53GG5 AC005559.1-201ENST00000589661 871 ntBASIC21.06■□□□□ 0.96
PDLIM3Q53GG5 CALM3-209ENST00000597743 577 ntTSL 4 BASIC21.06■□□□□ 0.96
PDLIM3Q53GG5 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDLIM3Q53GG5 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDLIM3Q53GG5 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.05■□□□□ 0.96
PDLIM3Q53GG5 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDLIM3Q53GG5 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDLIM3Q53GG5 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDLIM3Q53GG5 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC21.04■□□□□ 0.96
PDLIM3Q53GG5 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PDLIM3Q53GG5 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PDLIM3Q53GG5 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PDLIM3Q53GG5 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.03■□□□□ 0.96
PDLIM3Q53GG5 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PDLIM3Q53GG5 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PDLIM3Q53GG5 MIR762-201ENST00000390236 83 ntBASIC21.02■□□□□ 0.96
PDLIM3Q53GG5 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PDLIM3Q53GG5 HGH1-207ENST00000628266 258 ntTSL 5 BASIC21.02■□□□□ 0.96
PDLIM3Q53GG5 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
PDLIM3Q53GG5 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
PDLIM3Q53GG5 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PDLIM3Q53GG5 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PDLIM3Q53GG5 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
PDLIM3Q53GG5 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
PDLIM3Q53GG5 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PDLIM3Q53GG5 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PDLIM3Q53GG5 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PDLIM3Q53GG5 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PDLIM3Q53GG5 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PDLIM3Q53GG5 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PDLIM3Q53GG5 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms