Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
PDLIM3Q53GG5 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PDLIM3Q53GG5 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PDLIM3Q53GG5 RPS2-202ENST00000526522 924 ntTSL 2 BASIC21.21■□□□□ 0.99
PDLIM3Q53GG5 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC21.21■□□□□ 0.99
PDLIM3Q53GG5 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PDLIM3Q53GG5 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PDLIM3Q53GG5 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.19■□□□□ 0.98
PDLIM3Q53GG5 EBPL-202ENST00000378268 680 ntTSL 3 BASIC21.19■□□□□ 0.98
PDLIM3Q53GG5 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PDLIM3Q53GG5 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
PDLIM3Q53GG5 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PDLIM3Q53GG5 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PDLIM3Q53GG5 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PDLIM3Q53GG5 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PDLIM3Q53GG5 AC142086.6-201ENST00000621154 1765 ntBASIC21.18■□□□□ 0.98
PDLIM3Q53GG5 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PDLIM3Q53GG5 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC21.17■□□□□ 0.98
PDLIM3Q53GG5 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PDLIM3Q53GG5 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PDLIM3Q53GG5 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PDLIM3Q53GG5 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PDLIM3Q53GG5 HSD17B1P1-201ENST00000590052 955 ntBASIC21.16■□□□□ 0.98
PDLIM3Q53GG5 WASH5P-204ENST00000632292 975 ntBASIC21.16■□□□□ 0.98
PDLIM3Q53GG5 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
PDLIM3Q53GG5 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PDLIM3Q53GG5 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC21.15■□□□□ 0.98
PDLIM3Q53GG5 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PDLIM3Q53GG5 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
PDLIM3Q53GG5 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC21.15■□□□□ 0.98
PDLIM3Q53GG5 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PDLIM3Q53GG5 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PDLIM3Q53GG5 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
PDLIM3Q53GG5 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
PDLIM3Q53GG5 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PDLIM3Q53GG5 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC21.13■□□□□ 0.97
PDLIM3Q53GG5 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PDLIM3Q53GG5 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC21.13■□□□□ 0.97
PDLIM3Q53GG5 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
PDLIM3Q53GG5 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.13■□□□□ 0.97
PDLIM3Q53GG5 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC21.13■□□□□ 0.97
PDLIM3Q53GG5 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PDLIM3Q53GG5 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PDLIM3Q53GG5 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PDLIM3Q53GG5 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC21.12■□□□□ 0.97
PDLIM3Q53GG5 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
PDLIM3Q53GG5 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC21.11■□□□□ 0.97
PDLIM3Q53GG5 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC21.11■□□□□ 0.97
PDLIM3Q53GG5 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PDLIM3Q53GG5 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PDLIM3Q53GG5 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PDLIM3Q53GG5 BOD1-206ENST00000480951 814 ntTSL 2 BASIC21.1■□□□□ 0.97
PDLIM3Q53GG5 CHML-205ENST00000638160 705 ntTSL 3 BASIC21.1■□□□□ 0.97
PDLIM3Q53GG5 AL139393.2-201ENST00000608721 2025 ntBASIC21.1■□□□□ 0.97
PDLIM3Q53GG5 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
PDLIM3Q53GG5 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PDLIM3Q53GG5 MIR639-201ENST00000384974 98 ntBASIC21.09■□□□□ 0.97
PDLIM3Q53GG5 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PDLIM3Q53GG5 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC21.08■□□□□ 0.97
PDLIM3Q53GG5 AL133380.1-201ENST00000506013 324 ntBASIC21.08■□□□□ 0.97
PDLIM3Q53GG5 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PDLIM3Q53GG5 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PDLIM3Q53GG5 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDLIM3Q53GG5 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDLIM3Q53GG5 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PDLIM3Q53GG5 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PDLIM3Q53GG5 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
PDLIM3Q53GG5 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC21.06■□□□□ 0.96
PDLIM3Q53GG5 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC21.06■□□□□ 0.96
PDLIM3Q53GG5 AC005559.1-201ENST00000589661 871 ntBASIC21.06■□□□□ 0.96
PDLIM3Q53GG5 CALM3-209ENST00000597743 577 ntTSL 4 BASIC21.06■□□□□ 0.96
PDLIM3Q53GG5 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PDLIM3Q53GG5 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDLIM3Q53GG5 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.05■□□□□ 0.96
PDLIM3Q53GG5 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDLIM3Q53GG5 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDLIM3Q53GG5 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
PDLIM3Q53GG5 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC21.04■□□□□ 0.96
PDLIM3Q53GG5 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PDLIM3Q53GG5 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PDLIM3Q53GG5 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PDLIM3Q53GG5 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.03■□□□□ 0.96
PDLIM3Q53GG5 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PDLIM3Q53GG5 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PDLIM3Q53GG5 MIR762-201ENST00000390236 83 ntBASIC21.02■□□□□ 0.96
PDLIM3Q53GG5 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PDLIM3Q53GG5 HGH1-207ENST00000628266 258 ntTSL 5 BASIC21.02■□□□□ 0.96
PDLIM3Q53GG5 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
PDLIM3Q53GG5 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
PDLIM3Q53GG5 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PDLIM3Q53GG5 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PDLIM3Q53GG5 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
PDLIM3Q53GG5 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
PDLIM3Q53GG5 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PDLIM3Q53GG5 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PDLIM3Q53GG5 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PDLIM3Q53GG5 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PDLIM3Q53GG5 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PDLIM3Q53GG5 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PDLIM3Q53GG5 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 12.4 ms