Protein–RNA interactions for Protein: P09619

PDGFRB, Platelet-derived growth factor receptor beta, humanhuman

Predictions only

Length 1,106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRBP09619 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
PDGFRBP09619 PVT1-219ENST00000523427 938 ntTSL 3 BASIC27.75■■■□□ 2.03
PDGFRBP09619 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
PDGFRBP09619 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC27.73■■■□□ 2.03
PDGFRBP09619 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC27.73■■■□□ 2.03
PDGFRBP09619 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
PDGFRBP09619 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
PDGFRBP09619 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC27.71■■■□□ 2.03
PDGFRBP09619 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC27.7■■■□□ 2.03
PDGFRBP09619 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
PDGFRBP09619 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
PDGFRBP09619 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC27.68■■■□□ 2.02
PDGFRBP09619 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC27.67■■■□□ 2.02
PDGFRBP09619 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC27.67■■■□□ 2.02
PDGFRBP09619 CALM3-209ENST00000597743 577 ntTSL 4 BASIC27.67■■■□□ 2.02
PDGFRBP09619 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
PDGFRBP09619 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC27.67■■■□□ 2.02
PDGFRBP09619 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC27.66■■■□□ 2.02
PDGFRBP09619 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC27.66■■■□□ 2.02
PDGFRBP09619 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC27.65■■■□□ 2.02
PDGFRBP09619 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
PDGFRBP09619 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC27.65■■■□□ 2.02
PDGFRBP09619 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC27.65■■■□□ 2.02
PDGFRBP09619 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC27.64■■■□□ 2.02
PDGFRBP09619 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC27.64■■■□□ 2.02
PDGFRBP09619 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
PDGFRBP09619 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC27.63■■■□□ 2.01
PDGFRBP09619 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC27.63■■■□□ 2.01
PDGFRBP09619 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
PDGFRBP09619 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC27.62■■■□□ 2.01
PDGFRBP09619 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC27.62■■■□□ 2.01
PDGFRBP09619 LINC00273-201ENST00000539813 1452 ntBASIC27.62■■■□□ 2.01
PDGFRBP09619 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC27.62■■■□□ 2.01
PDGFRBP09619 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
PDGFRBP09619 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC27.61■■■□□ 2.01
PDGFRBP09619 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC27.61■■■□□ 2.01
PDGFRBP09619 LINC01971-201ENST00000617888 1048 ntBASIC27.61■■■□□ 2.01
PDGFRBP09619 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
PDGFRBP09619 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC27.6■■■□□ 2.01
PDGFRBP09619 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC27.6■■■□□ 2.01
PDGFRBP09619 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC27.59■■■□□ 2.01
PDGFRBP09619 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC27.59■■■□□ 2.01
PDGFRBP09619 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC27.59■■■□□ 2.01
PDGFRBP09619 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC27.59■■■□□ 2.01
PDGFRBP09619 DUX4L11-201ENST00000611504 1267 ntBASIC27.58■■■□□ 2.01
PDGFRBP09619 DUX4L12-201ENST00000614593 1267 ntBASIC27.58■■■□□ 2.01
PDGFRBP09619 DUX4L14-201ENST00000621227 1267 ntBASIC27.58■■■□□ 2.01
PDGFRBP09619 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC27.58■■■□□ 2.01
PDGFRBP09619 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC27.58■■■□□ 2.01
PDGFRBP09619 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC27.57■■■□□ 2
PDGFRBP09619 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
PDGFRBP09619 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC27.56■■■□□ 2
PDGFRBP09619 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC27.56■■■□□ 2
PDGFRBP09619 RNF166-209ENST00000567844 633 ntTSL 5 BASIC27.56■■■□□ 2
PDGFRBP09619 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC27.56■■■□□ 2
PDGFRBP09619 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC27.55■■■□□ 2
PDGFRBP09619 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC27.55■■■□□ 2
PDGFRBP09619 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC27.54■■■□□ 2
PDGFRBP09619 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC27.54■■■□□ 2
PDGFRBP09619 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC27.54■■■□□ 2
PDGFRBP09619 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
PDGFRBP09619 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC27.53■■■□□ 2
PDGFRBP09619 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC27.53■■■□□ 2
PDGFRBP09619 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC27.53■■■□□ 2
PDGFRBP09619 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
PDGFRBP09619 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
PDGFRBP09619 AC135983.2-203ENST00000454486 1613 ntBASIC27.52■■■□□ 2
PDGFRBP09619 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
PDGFRBP09619 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC27.51■■■□□ 2
PDGFRBP09619 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
PDGFRBP09619 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC27.51■■□□□ 1.99
PDGFRBP09619 WHAMMP2-203ENST00000563942 1603 ntBASIC27.51■■□□□ 1.99
PDGFRBP09619 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC27.5■■□□□ 1.99
PDGFRBP09619 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC27.5■■□□□ 1.99
PDGFRBP09619 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC27.5■■□□□ 1.99
PDGFRBP09619 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC27.5■■□□□ 1.99
PDGFRBP09619 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
PDGFRBP09619 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC27.49■■□□□ 1.99
PDGFRBP09619 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
PDGFRBP09619 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC27.49■■□□□ 1.99
PDGFRBP09619 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
PDGFRBP09619 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC27.48■■□□□ 1.99
PDGFRBP09619 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
PDGFRBP09619 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC27.46■■□□□ 1.99
PDGFRBP09619 MIR3648-2-201ENST00000581792 180 ntBASIC27.46■■□□□ 1.99
PDGFRBP09619 MIR3648-1-201ENST00000615959 180 ntBASIC27.46■■□□□ 1.99
PDGFRBP09619 GDI1-215ENST00000630693 786 ntTSL 4 BASIC27.46■■□□□ 1.99
PDGFRBP09619 CHML-204ENST00000638121 920 ntTSL 2 BASIC27.46■■□□□ 1.99
PDGFRBP09619 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC27.45■■□□□ 1.99
PDGFRBP09619 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
PDGFRBP09619 HLA-V-202ENST00000446817 847 ntBASIC27.45■■□□□ 1.98
PDGFRBP09619 DUX4L13-201ENST00000554103 1267 ntBASIC27.45■■□□□ 1.98
PDGFRBP09619 MBP-237ENST00000579129 1052 ntTSL 5 BASIC27.45■■□□□ 1.98
PDGFRBP09619 DUX4L15-201ENST00000611059 1267 ntBASIC27.45■■□□□ 1.98
PDGFRBP09619 DUX4L23-201ENST00000615195 1269 ntBASIC27.45■■□□□ 1.98
PDGFRBP09619 DUX4L24-201ENST00000617576 1269 ntBASIC27.45■■□□□ 1.98
PDGFRBP09619 DUX4L22-201ENST00000618238 1269 ntBASIC27.45■■□□□ 1.98
PDGFRBP09619 DUX4L20-201ENST00000619712 1269 ntBASIC27.45■■□□□ 1.98
PDGFRBP09619 DUX4L21-201ENST00000622058 1269 ntBASIC27.45■■□□□ 1.98
PDGFRBP09619 DUX4L10-201ENST00000622460 1267 ntBASIC27.45■■□□□ 1.98
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms