Protein–RNA interactions for Protein: P00352

ALDH1A1, Retinal dehydrogenase 1, humanhuman

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALDH1A1P00352 AC018358.1-201ENST00000631079 1402 ntBASIC30.5■■■□□ 2.47
ALDH1A1P00352 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
ALDH1A1P00352 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC30.49■■■□□ 2.47
ALDH1A1P00352 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC30.49■■■□□ 2.47
ALDH1A1P00352 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC30.49■■■□□ 2.47
ALDH1A1P00352 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
ALDH1A1P00352 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
ALDH1A1P00352 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
ALDH1A1P00352 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC30.47■■■□□ 2.47
ALDH1A1P00352 LINC00273-201ENST00000539813 1452 ntBASIC30.46■■■□□ 2.47
ALDH1A1P00352 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
ALDH1A1P00352 AL033527.3-201ENST00000566366 1196 ntBASIC30.46■■■□□ 2.47
ALDH1A1P00352 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC30.45■■■□□ 2.47
ALDH1A1P00352 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC30.45■■■□□ 2.47
ALDH1A1P00352 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC30.44■■■□□ 2.46
ALDH1A1P00352 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
ALDH1A1P00352 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC30.44■■■□□ 2.46
ALDH1A1P00352 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC30.44■■■□□ 2.46
ALDH1A1P00352 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC30.44■■■□□ 2.46
ALDH1A1P00352 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
ALDH1A1P00352 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC30.43■■■□□ 2.46
ALDH1A1P00352 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC30.42■■■□□ 2.46
ALDH1A1P00352 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC30.42■■■□□ 2.46
ALDH1A1P00352 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
ALDH1A1P00352 AC008813.1-201ENST00000536597 885 ntBASIC30.42■■■□□ 2.46
ALDH1A1P00352 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
ALDH1A1P00352 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC30.42■■■□□ 2.46
ALDH1A1P00352 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
ALDH1A1P00352 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC30.4■■■□□ 2.46
ALDH1A1P00352 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC30.4■■■□□ 2.46
ALDH1A1P00352 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
ALDH1A1P00352 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC30.39■■■□□ 2.46
ALDH1A1P00352 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC30.39■■■□□ 2.46
ALDH1A1P00352 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC30.38■■■□□ 2.45
ALDH1A1P00352 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
ALDH1A1P00352 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC30.38■■■□□ 2.45
ALDH1A1P00352 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC30.37■■■□□ 2.45
ALDH1A1P00352 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC30.35■■■□□ 2.45
ALDH1A1P00352 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC30.34■■■□□ 2.45
ALDH1A1P00352 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC30.34■■■□□ 2.45
ALDH1A1P00352 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
ALDH1A1P00352 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
ALDH1A1P00352 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
ALDH1A1P00352 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
ALDH1A1P00352 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC30.31■■■□□ 2.44
ALDH1A1P00352 U85056.1-201ENST00000616429 682 ntBASIC30.3■■■□□ 2.44
ALDH1A1P00352 HYI-213ENST00000583037 1322 ntTSL 5 BASIC30.29■■■□□ 2.44
ALDH1A1P00352 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
ALDH1A1P00352 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC30.26■■■□□ 2.43
ALDH1A1P00352 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC30.26■■■□□ 2.43
ALDH1A1P00352 TSPY13P-201ENST00000338964 914 ntBASIC30.25■■■□□ 2.43
ALDH1A1P00352 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC30.25■■■□□ 2.43
ALDH1A1P00352 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC30.25■■■□□ 2.43
ALDH1A1P00352 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC30.24■■■□□ 2.43
ALDH1A1P00352 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC30.23■■■□□ 2.43
ALDH1A1P00352 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
ALDH1A1P00352 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
ALDH1A1P00352 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
ALDH1A1P00352 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
ALDH1A1P00352 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC30.21■■■□□ 2.43
ALDH1A1P00352 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
ALDH1A1P00352 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
ALDH1A1P00352 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
ALDH1A1P00352 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC30.19■■■□□ 2.42
ALDH1A1P00352 GFER-205ENST00000569451 517 ntTSL 5 BASIC30.19■■■□□ 2.42
ALDH1A1P00352 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC30.19■■■□□ 2.42
ALDH1A1P00352 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
ALDH1A1P00352 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
ALDH1A1P00352 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC30.16■■■□□ 2.42
ALDH1A1P00352 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
ALDH1A1P00352 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
ALDH1A1P00352 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC30.16■■■□□ 2.42
ALDH1A1P00352 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
ALDH1A1P00352 CHST11-203ENST00000547956 936 ntTSL 2 BASIC30.16■■■□□ 2.42
ALDH1A1P00352 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC30.16■■■□□ 2.42
ALDH1A1P00352 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC30.15■■■□□ 2.42
ALDH1A1P00352 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
ALDH1A1P00352 AC004987.1-201ENST00000428627 508 ntBASIC30.15■■■□□ 2.42
ALDH1A1P00352 ATP5G2P3-201ENST00000429083 425 ntBASIC30.15■■■□□ 2.42
ALDH1A1P00352 AC060814.1-201ENST00000554326 538 ntBASIC30.15■■■□□ 2.42
ALDH1A1P00352 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC30.15■■■□□ 2.42
ALDH1A1P00352 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC30.15■■■□□ 2.42
ALDH1A1P00352 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
ALDH1A1P00352 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC30.14■■■□□ 2.42
ALDH1A1P00352 RARRES2P1-201ENST00000474487 481 ntBASIC30.14■■■□□ 2.42
ALDH1A1P00352 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC30.14■■■□□ 2.42
ALDH1A1P00352 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
ALDH1A1P00352 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
ALDH1A1P00352 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC30.13■■■□□ 2.41
ALDH1A1P00352 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC30.13■■■□□ 2.41
ALDH1A1P00352 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
ALDH1A1P00352 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
ALDH1A1P00352 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
ALDH1A1P00352 KRT18P60-201ENST00000312876 1297 ntBASIC30.11■■■□□ 2.41
ALDH1A1P00352 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC30.11■■■□□ 2.41
ALDH1A1P00352 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC30.11■■■□□ 2.41
ALDH1A1P00352 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC30.11■■■□□ 2.41
ALDH1A1P00352 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
ALDH1A1P00352 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC30.1■■■□□ 2.41
ALDH1A1P00352 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC30.1■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms