Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC34.88■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC34.88■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC34.88■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC34.88■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC34.87■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC34.87■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC34.85■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC34.84■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC34.84■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC34.83■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
SENP3-EIF4A1A0A087X0R7 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC34.81■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 CHML-205ENST00000638160 705 ntTSL 3 BASIC34.81■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC34.81■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC34.8■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC34.8■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC34.8■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 AC044849.2-201ENST00000606596 710 ntBASIC34.8■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 DUX4L28-201ENST00000623687 678 ntBASIC34.8■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC34.8■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC34.8■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC34.79■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC34.78■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC34.78■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC34.76■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 AC005559.1-201ENST00000589661 871 ntBASIC34.76■■■■□ 3.16
SENP3-EIF4A1A0A087X0R7 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC34.76■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC34.75■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC34.75■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC34.75■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC34.74■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC34.74■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC34.74■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 AL139393.2-201ENST00000608721 2025 ntBASIC34.74■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC34.73■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC34.73■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC34.73■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC34.72■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC34.72■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC34.71■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC34.71■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC34.7■■■■□ 3.15
SENP3-EIF4A1A0A087X0R7 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC34.7■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC34.69■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC34.69■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC34.69■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC34.69■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC34.67■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC34.66■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC34.65■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC34.64■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC34.64■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC34.64■■■■□ 3.14
SENP3-EIF4A1A0A087X0R7 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC34.62■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC34.62■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 RPS2-209ENST00000529806 993 ntTSL 3 BASIC34.62■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC34.62■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC34.61■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC34.61■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC34.61■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC34.6■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC34.6■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC34.6■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC34.6■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 AC127502.1-201ENST00000399971 1502 ntBASIC34.59■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC34.58■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC34.58■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 MIR639-201ENST00000384974 98 ntBASIC34.58■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 MIR6090-201ENST00000622481 60 ntBASIC34.58■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.13
SENP3-EIF4A1A0A087X0R7 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC34.57■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC34.57■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC34.57■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 CALM3-209ENST00000597743 577 ntTSL 4 BASIC34.57■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC34.56■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC34.56■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC34.54■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC34.54■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC34.52■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC34.52■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC34.51■■■■□ 3.12
SENP3-EIF4A1A0A087X0R7 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
SENP3-EIF4A1A0A087X0R7 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
SENP3-EIF4A1A0A087X0R7 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC34.48■■■■□ 3.11
SENP3-EIF4A1A0A087X0R7 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC34.47■■■■□ 3.11
SENP3-EIF4A1A0A087X0R7 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC34.47■■■■□ 3.11
SENP3-EIF4A1A0A087X0R7 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC34.47■■■■□ 3.11
SENP3-EIF4A1A0A087X0R7 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC34.47■■■■□ 3.11
SENP3-EIF4A1A0A087X0R7 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC34.46■■■■□ 3.11
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms