Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 DUX4L21-201ENST00000622058 1269 ntBASIC24.08■■□□□ 1.44
SHANK1Q9Y566 DUX4L10-201ENST00000622460 1267 ntBASIC24.08■■□□□ 1.44
SHANK1Q9Y566 DUX4L25-201ENST00000624915 1269 ntBASIC24.08■■□□□ 1.44
SHANK1Q9Y566 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
SHANK1Q9Y566 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
SHANK1Q9Y566 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC24.07■■□□□ 1.44
SHANK1Q9Y566 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC24.07■■□□□ 1.44
SHANK1Q9Y566 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC24.06■■□□□ 1.44
SHANK1Q9Y566 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC24.06■■□□□ 1.44
SHANK1Q9Y566 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
SHANK1Q9Y566 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
SHANK1Q9Y566 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC24.04■■□□□ 1.44
SHANK1Q9Y566 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
SHANK1Q9Y566 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC24.04■■□□□ 1.44
SHANK1Q9Y566 SRP68-213ENST00000629930 165 ntTSL 5 BASIC24.04■■□□□ 1.44
SHANK1Q9Y566 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC24.04■■□□□ 1.44
SHANK1Q9Y566 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
SHANK1Q9Y566 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
SHANK1Q9Y566 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
SHANK1Q9Y566 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC24.03■■□□□ 1.44
SHANK1Q9Y566 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC24.02■■□□□ 1.44
SHANK1Q9Y566 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC24.02■■□□□ 1.44
SHANK1Q9Y566 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC24.01■■□□□ 1.43
SHANK1Q9Y566 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
SHANK1Q9Y566 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
SHANK1Q9Y566 RARRES2P2-201ENST00000394842 485 ntBASIC24■■□□□ 1.43
SHANK1Q9Y566 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC24■■□□□ 1.43
SHANK1Q9Y566 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
SHANK1Q9Y566 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
SHANK1Q9Y566 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
SHANK1Q9Y566 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC23.95■■□□□ 1.42
SHANK1Q9Y566 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC23.95■■□□□ 1.42
SHANK1Q9Y566 ABHD17AP5-201ENST00000580133 923 ntBASIC23.95■■□□□ 1.42
SHANK1Q9Y566 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
SHANK1Q9Y566 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
SHANK1Q9Y566 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC23.94■■□□□ 1.42
SHANK1Q9Y566 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
SHANK1Q9Y566 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC23.93■■□□□ 1.42
SHANK1Q9Y566 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
SHANK1Q9Y566 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
SHANK1Q9Y566 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC23.91■■□□□ 1.42
SHANK1Q9Y566 HES6-205ENST00000409356 528 ntTSL 2 BASIC23.91■■□□□ 1.42
SHANK1Q9Y566 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SHANK1Q9Y566 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC23.9■■□□□ 1.42
SHANK1Q9Y566 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
SHANK1Q9Y566 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
SHANK1Q9Y566 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
SHANK1Q9Y566 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.41
SHANK1Q9Y566 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC23.88■■□□□ 1.41
SHANK1Q9Y566 CHML-204ENST00000638121 920 ntTSL 2 BASIC23.88■■□□□ 1.41
SHANK1Q9Y566 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SHANK1Q9Y566 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC23.87■■□□□ 1.41
SHANK1Q9Y566 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
SHANK1Q9Y566 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SHANK1Q9Y566 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
SHANK1Q9Y566 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SHANK1Q9Y566 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC23.85■■□□□ 1.41
SHANK1Q9Y566 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SHANK1Q9Y566 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SHANK1Q9Y566 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
SHANK1Q9Y566 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
SHANK1Q9Y566 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
SHANK1Q9Y566 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC23.85■■□□□ 1.41
SHANK1Q9Y566 EI24-212ENST00000615917 1407 ntTSL 2 BASIC23.84■■□□□ 1.41
SHANK1Q9Y566 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
SHANK1Q9Y566 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
SHANK1Q9Y566 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
SHANK1Q9Y566 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC23.83■■□□□ 1.41
SHANK1Q9Y566 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC23.82■■□□□ 1.4
SHANK1Q9Y566 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC23.82■■□□□ 1.4
SHANK1Q9Y566 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
SHANK1Q9Y566 GPX1-201ENST00000419349 1106 ntBASIC23.82■■□□□ 1.4
SHANK1Q9Y566 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC23.82■■□□□ 1.4
SHANK1Q9Y566 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SHANK1Q9Y566 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SHANK1Q9Y566 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC23.81■■□□□ 1.4
SHANK1Q9Y566 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SHANK1Q9Y566 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SHANK1Q9Y566 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SHANK1Q9Y566 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SHANK1Q9Y566 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SHANK1Q9Y566 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SHANK1Q9Y566 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SHANK1Q9Y566 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
SHANK1Q9Y566 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
SHANK1Q9Y566 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
SHANK1Q9Y566 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC23.8■■□□□ 1.4
SHANK1Q9Y566 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
SHANK1Q9Y566 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SHANK1Q9Y566 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
SHANK1Q9Y566 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SHANK1Q9Y566 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
SHANK1Q9Y566 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC23.79■■□□□ 1.4
SHANK1Q9Y566 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC23.78■■□□□ 1.4
SHANK1Q9Y566 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SHANK1Q9Y566 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SHANK1Q9Y566 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
SHANK1Q9Y566 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
SHANK1Q9Y566 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SHANK1Q9Y566 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 228.4 ms