Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC41.31■■■■■ 4.2
COL17A1Q9UMD9 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC41.3■■■■■ 4.2
COL17A1Q9UMD9 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC41.29■■■■■ 4.2
COL17A1Q9UMD9 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC41.28■■■■■ 4.2
COL17A1Q9UMD9 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC41.28■■■■■ 4.2
COL17A1Q9UMD9 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC41.28■■■■■ 4.2
COL17A1Q9UMD9 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC41.27■■■■■ 4.2
COL17A1Q9UMD9 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC41.27■■■■■ 4.2
COL17A1Q9UMD9 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC41.27■■■■■ 4.2
COL17A1Q9UMD9 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC41.25■■■■■ 4.19
COL17A1Q9UMD9 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC41.25■■■■■ 4.19
COL17A1Q9UMD9 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC41.25■■■■■ 4.19
COL17A1Q9UMD9 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC41.23■■■■■ 4.19
COL17A1Q9UMD9 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC41.22■■■■■ 4.19
COL17A1Q9UMD9 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC41.21■■■■■ 4.19
COL17A1Q9UMD9 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC41.2■■■■■ 4.19
COL17A1Q9UMD9 CHML-204ENST00000638121 920 ntTSL 2 BASIC41.2■■■■■ 4.19
COL17A1Q9UMD9 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC41.18■■■■■ 4.18
COL17A1Q9UMD9 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC41.16■■■■■ 4.18
COL17A1Q9UMD9 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC41.16■■■■■ 4.18
COL17A1Q9UMD9 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC41.16■■■■■ 4.18
COL17A1Q9UMD9 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC41.15■■■■■ 4.18
COL17A1Q9UMD9 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC41.15■■■■■ 4.18
COL17A1Q9UMD9 AC018358.1-201ENST00000631079 1402 ntBASIC41.14■■■■■ 4.18
COL17A1Q9UMD9 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC41.12■■■■■ 4.17
COL17A1Q9UMD9 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC41.11■■■■■ 4.17
COL17A1Q9UMD9 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC41.09■■■■■ 4.17
COL17A1Q9UMD9 AC008813.1-201ENST00000536597 885 ntBASIC41.07■■■■■ 4.16
COL17A1Q9UMD9 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC41.05■■■■■ 4.16
COL17A1Q9UMD9 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC41.05■■■■■ 4.16
COL17A1Q9UMD9 TPT1-202ENST00000379055 948 ntTSL 2 BASIC41.04■■■■■ 4.16
COL17A1Q9UMD9 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC41.04■■■■■ 4.16
COL17A1Q9UMD9 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC41.03■■■■■ 4.16
COL17A1Q9UMD9 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC41.03■■■■■ 4.16
COL17A1Q9UMD9 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC41.03■■■■■ 4.16
COL17A1Q9UMD9 AL033527.3-201ENST00000566366 1196 ntBASIC41.03■■■■■ 4.16
COL17A1Q9UMD9 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC41.02■■■■■ 4.16
COL17A1Q9UMD9 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC41.02■■■■■ 4.16
COL17A1Q9UMD9 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC41.01■■■■■ 4.16
COL17A1Q9UMD9 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC41.01■■■■■ 4.15
COL17A1Q9UMD9 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC41■■■■■ 4.15
COL17A1Q9UMD9 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC41■■■■■ 4.15
COL17A1Q9UMD9 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC41■■■■■ 4.15
COL17A1Q9UMD9 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC41■■■■■ 4.15
COL17A1Q9UMD9 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC40.99■■■■■ 4.15
COL17A1Q9UMD9 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC40.98■■■■■ 4.15
COL17A1Q9UMD9 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC40.97■■■■■ 4.15
COL17A1Q9UMD9 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC40.97■■■■■ 4.15
COL17A1Q9UMD9 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC40.96■■■■■ 4.15
COL17A1Q9UMD9 CEP120-209ENST00000515110 606 ntTSL 3 BASIC40.95■■■■■ 4.15
COL17A1Q9UMD9 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC40.95■■■■■ 4.15
COL17A1Q9UMD9 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC40.93■■■■■ 4.14
COL17A1Q9UMD9 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC40.93■■■■■ 4.14
COL17A1Q9UMD9 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC40.93■■■■■ 4.14
COL17A1Q9UMD9 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC40.91■■■■■ 4.14
COL17A1Q9UMD9 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC40.9■■■■■ 4.14
COL17A1Q9UMD9 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC40.9■■■■■ 4.14
COL17A1Q9UMD9 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC40.9■■■■■ 4.14
COL17A1Q9UMD9 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC40.9■■■■■ 4.14
COL17A1Q9UMD9 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC40.89■■■■■ 4.14
COL17A1Q9UMD9 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC40.89■■■■■ 4.14
COL17A1Q9UMD9 GFER-205ENST00000569451 517 ntTSL 5 BASIC40.88■■■■■ 4.13
COL17A1Q9UMD9 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC40.88■■■■■ 4.13
COL17A1Q9UMD9 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC40.86■■■■■ 4.13
COL17A1Q9UMD9 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC40.86■■■■■ 4.13
COL17A1Q9UMD9 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC40.85■■■■■ 4.13
COL17A1Q9UMD9 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC40.84■■■■■ 4.13
COL17A1Q9UMD9 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC40.83■■■■■ 4.13
COL17A1Q9UMD9 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC40.81■■■■■ 4.12
COL17A1Q9UMD9 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC40.8■■■■■ 4.12
COL17A1Q9UMD9 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC40.79■■■■■ 4.12
COL17A1Q9UMD9 CHST11-202ENST00000546689 756 ntTSL 2 BASIC40.78■■■■■ 4.12
COL17A1Q9UMD9 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC40.78■■■■■ 4.12
COL17A1Q9UMD9 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC40.77■■■■■ 4.12
COL17A1Q9UMD9 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC40.77■■■■■ 4.12
COL17A1Q9UMD9 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC40.77■■■■■ 4.12
COL17A1Q9UMD9 RARRES2P1-201ENST00000474487 481 ntBASIC40.76■■■■■ 4.12
COL17A1Q9UMD9 U85056.1-201ENST00000616429 682 ntBASIC40.76■■■■■ 4.12
COL17A1Q9UMD9 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC40.75■■■■■ 4.11
COL17A1Q9UMD9 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC40.74■■■■■ 4.11
COL17A1Q9UMD9 EI24-212ENST00000615917 1407 ntTSL 2 BASIC40.74■■■■■ 4.11
COL17A1Q9UMD9 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC40.72■■■■■ 4.11
COL17A1Q9UMD9 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC40.72■■■■■ 4.11
COL17A1Q9UMD9 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC40.72■■■■■ 4.11
COL17A1Q9UMD9 AC022413.1-201ENST00000624602 984 ntBASIC40.72■■■■■ 4.11
COL17A1Q9UMD9 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC40.72■■■■■ 4.11
COL17A1Q9UMD9 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC40.71■■■■■ 4.11
COL17A1Q9UMD9 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC40.69■■■■■ 4.11
COL17A1Q9UMD9 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC40.69■■■■■ 4.1
COL17A1Q9UMD9 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC40.68■■■■■ 4.1
COL17A1Q9UMD9 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC40.68■■■■■ 4.1
COL17A1Q9UMD9 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC40.67■■■■■ 4.1
COL17A1Q9UMD9 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC40.64■■■■■ 4.1
COL17A1Q9UMD9 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC40.64■■■■■ 4.1
COL17A1Q9UMD9 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC40.64■■■■■ 4.1
COL17A1Q9UMD9 AC019069.1-201ENST00000610008 1333 ntBASIC40.63■■■■■ 4.1
COL17A1Q9UMD9 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC40.63■■■■■ 4.09
COL17A1Q9UMD9 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC40.62■■■■■ 4.09
COL17A1Q9UMD9 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC40.62■■■■■ 4.09
COL17A1Q9UMD9 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC40.61■■■■■ 4.09
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms