Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
SMC1BQ8NDV3 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC32.26■■■□□ 2.75
SMC1BQ8NDV3 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC32.25■■■□□ 2.75
SMC1BQ8NDV3 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
SMC1BQ8NDV3 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
SMC1BQ8NDV3 CHML-204ENST00000638121 920 ntTSL 2 BASIC32.24■■■□□ 2.75
SMC1BQ8NDV3 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
SMC1BQ8NDV3 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
SMC1BQ8NDV3 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
SMC1BQ8NDV3 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC32.23■■■□□ 2.75
SMC1BQ8NDV3 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
SMC1BQ8NDV3 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC32.21■■■□□ 2.75
SMC1BQ8NDV3 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
SMC1BQ8NDV3 CEP120-209ENST00000515110 606 ntTSL 3 BASIC32.21■■■□□ 2.75
SMC1BQ8NDV3 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC32.2■■■□□ 2.75
SMC1BQ8NDV3 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
SMC1BQ8NDV3 AL033527.3-201ENST00000566366 1196 ntBASIC32.18■■■□□ 2.74
SMC1BQ8NDV3 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
SMC1BQ8NDV3 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
SMC1BQ8NDV3 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC32.16■■■□□ 2.74
SMC1BQ8NDV3 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC32.15■■■□□ 2.74
SMC1BQ8NDV3 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC32.15■■■□□ 2.74
SMC1BQ8NDV3 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC32.14■■■□□ 2.74
SMC1BQ8NDV3 AC008813.1-201ENST00000536597 885 ntBASIC32.14■■■□□ 2.74
SMC1BQ8NDV3 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC32.14■■■□□ 2.74
SMC1BQ8NDV3 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC32.14■■■□□ 2.74
SMC1BQ8NDV3 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC32.13■■■□□ 2.73
SMC1BQ8NDV3 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
SMC1BQ8NDV3 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
SMC1BQ8NDV3 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC32.11■■■□□ 2.73
SMC1BQ8NDV3 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC32.11■■■□□ 2.73
SMC1BQ8NDV3 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
SMC1BQ8NDV3 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC32.1■■■□□ 2.73
SMC1BQ8NDV3 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
SMC1BQ8NDV3 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
SMC1BQ8NDV3 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC32.08■■■□□ 2.73
SMC1BQ8NDV3 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
SMC1BQ8NDV3 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC32.05■■■□□ 2.72
SMC1BQ8NDV3 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC32.04■■■□□ 2.72
SMC1BQ8NDV3 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
SMC1BQ8NDV3 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
SMC1BQ8NDV3 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
SMC1BQ8NDV3 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC32.02■■■□□ 2.72
SMC1BQ8NDV3 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
SMC1BQ8NDV3 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC32.02■■■□□ 2.72
SMC1BQ8NDV3 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
SMC1BQ8NDV3 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC32.01■■■□□ 2.72
SMC1BQ8NDV3 HES4-202ENST00000428771 1040 ntTSL 2 BASIC32■■■□□ 2.71
SMC1BQ8NDV3 CHST11-202ENST00000546689 756 ntTSL 2 BASIC32■■■□□ 2.71
SMC1BQ8NDV3 AC019069.1-201ENST00000610008 1333 ntBASIC32■■■□□ 2.71
SMC1BQ8NDV3 AC022413.1-201ENST00000624602 984 ntBASIC31.99■■■□□ 2.71
SMC1BQ8NDV3 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
SMC1BQ8NDV3 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC31.98■■■□□ 2.71
SMC1BQ8NDV3 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC31.95■■■□□ 2.71
SMC1BQ8NDV3 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC31.95■■■□□ 2.71
SMC1BQ8NDV3 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
SMC1BQ8NDV3 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC31.92■■■□□ 2.7
SMC1BQ8NDV3 EI24-212ENST00000615917 1407 ntTSL 2 BASIC31.92■■■□□ 2.7
SMC1BQ8NDV3 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC31.91■■■□□ 2.7
SMC1BQ8NDV3 RARRES2P1-201ENST00000474487 481 ntBASIC31.91■■■□□ 2.7
SMC1BQ8NDV3 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
SMC1BQ8NDV3 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
SMC1BQ8NDV3 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
SMC1BQ8NDV3 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC31.89■■■□□ 2.7
SMC1BQ8NDV3 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC31.89■■■□□ 2.7
SMC1BQ8NDV3 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
SMC1BQ8NDV3 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
SMC1BQ8NDV3 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
SMC1BQ8NDV3 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
SMC1BQ8NDV3 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC31.87■■■□□ 2.69
SMC1BQ8NDV3 GFER-205ENST00000569451 517 ntTSL 5 BASIC31.86■■■□□ 2.69
SMC1BQ8NDV3 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
SMC1BQ8NDV3 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC31.85■■■□□ 2.69
SMC1BQ8NDV3 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
SMC1BQ8NDV3 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC31.83■■■□□ 2.69
SMC1BQ8NDV3 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
SMC1BQ8NDV3 TSPY13P-201ENST00000338964 914 ntBASIC31.82■■■□□ 2.68
SMC1BQ8NDV3 U85056.1-201ENST00000616429 682 ntBASIC31.82■■■□□ 2.68
SMC1BQ8NDV3 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC31.81■■■□□ 2.68
SMC1BQ8NDV3 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
SMC1BQ8NDV3 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC31.81■■■□□ 2.68
SMC1BQ8NDV3 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC31.8■■■□□ 2.68
SMC1BQ8NDV3 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC31.8■■■□□ 2.68
SMC1BQ8NDV3 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
SMC1BQ8NDV3 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC31.8■■■□□ 2.68
SMC1BQ8NDV3 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
SMC1BQ8NDV3 AL592295.1-201ENST00000400984 884 ntBASIC31.79■■■□□ 2.68
SMC1BQ8NDV3 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
SMC1BQ8NDV3 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC31.77■■■□□ 2.68
SMC1BQ8NDV3 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC31.77■■■□□ 2.68
SMC1BQ8NDV3 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
SMC1BQ8NDV3 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC31.76■■■□□ 2.67
SMC1BQ8NDV3 HYI-213ENST00000583037 1322 ntTSL 5 BASIC31.75■■■□□ 2.67
SMC1BQ8NDV3 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
SMC1BQ8NDV3 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
SMC1BQ8NDV3 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
SMC1BQ8NDV3 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
SMC1BQ8NDV3 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
SMC1BQ8NDV3 MTURN-203ENST00000409688 843 ntTSL 2 BASIC31.72■■■□□ 2.67
SMC1BQ8NDV3 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Retrieved 100 of 98,524 protein–RNA pairs in 125 ms