Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
RNF4P78317 MIR6090-201ENST00000622481 60 ntBASIC24.43■■□□□ 1.5
RNF4P78317 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RNF4P78317 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
RNF4P78317 AC010864.1-201ENST00000609407 1511 ntBASIC24.42■■□□□ 1.5
RNF4P78317 AL135925.1-201ENST00000605920 1701 ntBASIC24.42■■□□□ 1.5
RNF4P78317 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
RNF4P78317 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
RNF4P78317 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC24.41■■□□□ 1.5
RNF4P78317 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
RNF4P78317 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC24.41■■□□□ 1.5
RNF4P78317 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC24.41■■□□□ 1.5
RNF4P78317 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RNF4P78317 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
RNF4P78317 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.49
RNF4P78317 CIB2-204ENST00000557846 934 ntTSL 3 BASIC24.38■■□□□ 1.49
RNF4P78317 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
RNF4P78317 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
RNF4P78317 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
RNF4P78317 ST7-202ENST00000323984 2142 ntTSL 5 BASIC24.35■■□□□ 1.49
RNF4P78317 ST7-207ENST00000393449 2127 ntTSL 5 BASIC24.35■■□□□ 1.49
RNF4P78317 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC24.35■■□□□ 1.49
RNF4P78317 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC24.35■■□□□ 1.49
RNF4P78317 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC24.34■■□□□ 1.49
RNF4P78317 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC24.33■■□□□ 1.49
RNF4P78317 MLEC-202ENST00000412616 841 ntTSL 3 BASIC24.33■■□□□ 1.49
RNF4P78317 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC24.32■■□□□ 1.48
RNF4P78317 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RNF4P78317 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
RNF4P78317 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
RNF4P78317 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
RNF4P78317 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
RNF4P78317 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC24.31■■□□□ 1.48
RNF4P78317 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC24.31■■□□□ 1.48
RNF4P78317 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
RNF4P78317 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC24.31■■□□□ 1.48
RNF4P78317 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC24.31■■□□□ 1.48
RNF4P78317 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC24.3■■□□□ 1.48
RNF4P78317 DUX4L29-201ENST00000425409 679 ntBASIC24.3■■□□□ 1.48
RNF4P78317 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC24.3■■□□□ 1.48
RNF4P78317 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC24.29■■□□□ 1.48
RNF4P78317 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
RNF4P78317 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC24.28■■□□□ 1.48
RNF4P78317 ABHD17AP4-201ENST00000411545 909 ntBASIC24.27■■□□□ 1.48
RNF4P78317 AC021231.2-201ENST00000594613 730 ntBASIC24.27■■□□□ 1.48
RNF4P78317 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC24.27■■□□□ 1.48
RNF4P78317 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC24.26■■□□□ 1.47
RNF4P78317 HGH1-207ENST00000628266 258 ntTSL 5 BASIC24.26■■□□□ 1.47
RNF4P78317 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
RNF4P78317 ST7-AS1-201ENST00000456775 1889 ntBASIC24.25■■□□□ 1.47
RNF4P78317 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
RNF4P78317 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
RNF4P78317 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC24.24■■□□□ 1.47
RNF4P78317 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
RNF4P78317 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
RNF4P78317 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
RNF4P78317 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
RNF4P78317 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC24.22■■□□□ 1.47
RNF4P78317 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
RNF4P78317 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
RNF4P78317 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RNF4P78317 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RNF4P78317 EI24-212ENST00000615917 1407 ntTSL 2 BASIC24.21■■□□□ 1.47
RNF4P78317 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
RNF4P78317 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RNF4P78317 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RNF4P78317 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RNF4P78317 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
RNF4P78317 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
RNF4P78317 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
RNF4P78317 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC24.2■■□□□ 1.46
RNF4P78317 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
RNF4P78317 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
RNF4P78317 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC24.18■■□□□ 1.46
RNF4P78317 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
RNF4P78317 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC24.18■■□□□ 1.46
RNF4P78317 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC24.18■■□□□ 1.46
RNF4P78317 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
RNF4P78317 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
RNF4P78317 ZNRF2P2-203ENST00000454624 420 ntBASIC24.17■■□□□ 1.46
RNF4P78317 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
RNF4P78317 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC24.17■■□□□ 1.46
RNF4P78317 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC24.16■■□□□ 1.46
RNF4P78317 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
RNF4P78317 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
RNF4P78317 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC24.15■■□□□ 1.46
RNF4P78317 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC24.15■■□□□ 1.46
RNF4P78317 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
RNF4P78317 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC24.14■■□□□ 1.45
RNF4P78317 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
RNF4P78317 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC24.13■■□□□ 1.45
RNF4P78317 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC24.13■■□□□ 1.45
RNF4P78317 AC127502.1-201ENST00000399971 1502 ntBASIC24.13■■□□□ 1.45
RNF4P78317 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC24.13■■□□□ 1.45
RNF4P78317 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC24.12■■□□□ 1.45
RNF4P78317 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC24.11■■□□□ 1.45
RNF4P78317 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
RNF4P78317 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
RNF4P78317 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
RNF4P78317 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms