Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
HTTP42858 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC30.52■■■□□ 2.48
HTTP42858 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC30.51■■■□□ 2.48
HTTP42858 GPX1-201ENST00000419349 1106 ntBASIC30.51■■■□□ 2.47
HTTP42858 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
HTTP42858 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
HTTP42858 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
HTTP42858 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
HTTP42858 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
HTTP42858 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
HTTP42858 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
HTTP42858 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
HTTP42858 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC30.49■■■□□ 2.47
HTTP42858 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
HTTP42858 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC30.49■■■□□ 2.47
HTTP42858 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC30.49■■■□□ 2.47
HTTP42858 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC30.49■■■□□ 2.47
HTTP42858 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC30.48■■■□□ 2.47
HTTP42858 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
HTTP42858 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
HTTP42858 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
HTTP42858 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
HTTP42858 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC30.45■■■□□ 2.46
HTTP42858 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
HTTP42858 NTF6A-201ENST00000591175 560 ntBASIC30.45■■■□□ 2.46
HTTP42858 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC30.44■■■□□ 2.46
HTTP42858 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC30.43■■■□□ 2.46
HTTP42858 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC30.43■■■□□ 2.46
HTTP42858 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC30.42■■■□□ 2.46
HTTP42858 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC30.42■■■□□ 2.46
HTTP42858 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
HTTP42858 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC30.38■■■□□ 2.45
HTTP42858 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC30.38■■■□□ 2.45
HTTP42858 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC30.38■■■□□ 2.45
HTTP42858 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC30.38■■■□□ 2.45
HTTP42858 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC30.38■■■□□ 2.45
HTTP42858 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
HTTP42858 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC30.37■■■□□ 2.45
HTTP42858 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
HTTP42858 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
HTTP42858 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC30.36■■■□□ 2.45
HTTP42858 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC30.36■■■□□ 2.45
HTTP42858 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC30.34■■■□□ 2.45
HTTP42858 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
HTTP42858 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC30.34■■■□□ 2.45
HTTP42858 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
HTTP42858 AC012354.3-201ENST00000623734 483 ntBASIC30.33■■■□□ 2.45
HTTP42858 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC30.32■■■□□ 2.44
HTTP42858 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
HTTP42858 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC30.3■■■□□ 2.44
HTTP42858 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC30.29■■■□□ 2.44
HTTP42858 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC30.29■■■□□ 2.44
HTTP42858 CHML-204ENST00000638121 920 ntTSL 2 BASIC30.28■■■□□ 2.44
HTTP42858 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
HTTP42858 AC018358.1-201ENST00000631079 1402 ntBASIC30.27■■■□□ 2.44
HTTP42858 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
HTTP42858 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC30.26■■■□□ 2.43
HTTP42858 AC008813.1-201ENST00000536597 885 ntBASIC30.26■■■□□ 2.43
HTTP42858 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
HTTP42858 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC30.25■■■□□ 2.43
HTTP42858 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC30.25■■■□□ 2.43
HTTP42858 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
HTTP42858 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC30.24■■■□□ 2.43
HTTP42858 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC30.23■■■□□ 2.43
HTTP42858 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
HTTP42858 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC30.22■■■□□ 2.43
HTTP42858 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC30.22■■■□□ 2.43
HTTP42858 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC30.22■■■□□ 2.43
HTTP42858 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC30.21■■■□□ 2.43
HTTP42858 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC30.21■■■□□ 2.43
HTTP42858 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
HTTP42858 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC30.21■■■□□ 2.43
HTTP42858 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC30.21■■■□□ 2.43
HTTP42858 CEP120-209ENST00000515110 606 ntTSL 3 BASIC30.2■■■□□ 2.43
HTTP42858 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC30.2■■■□□ 2.43
HTTP42858 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
HTTP42858 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC30.2■■■□□ 2.43
HTTP42858 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC30.19■■■□□ 2.42
HTTP42858 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC30.19■■■□□ 2.42
HTTP42858 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC30.19■■■□□ 2.42
HTTP42858 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
HTTP42858 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
HTTP42858 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
HTTP42858 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC30.18■■■□□ 2.42
HTTP42858 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
HTTP42858 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC30.18■■■□□ 2.42
HTTP42858 AL033527.3-201ENST00000566366 1196 ntBASIC30.18■■■□□ 2.42
HTTP42858 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC30.17■■■□□ 2.42
HTTP42858 TPT1-202ENST00000379055 948 ntTSL 2 BASIC30.17■■■□□ 2.42
HTTP42858 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC30.16■■■□□ 2.42
HTTP42858 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
HTTP42858 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
HTTP42858 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
HTTP42858 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC30.12■■■□□ 2.41
HTTP42858 GFER-205ENST00000569451 517 ntTSL 5 BASIC30.12■■■□□ 2.41
HTTP42858 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
HTTP42858 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
HTTP42858 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC30.09■■■□□ 2.41
HTTP42858 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC30.08■■■□□ 2.41
HTTP42858 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms