Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
HNF4AP41235 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC25.4■■□□□ 1.66
HNF4AP41235 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
HNF4AP41235 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
HNF4AP41235 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC25.39■■□□□ 1.66
HNF4AP41235 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
HNF4AP41235 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC25.38■■□□□ 1.65
HNF4AP41235 AC010864.1-201ENST00000609407 1511 ntBASIC25.38■■□□□ 1.65
HNF4AP41235 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
HNF4AP41235 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
HNF4AP41235 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
HNF4AP41235 HNRNPLP2-201ENST00000568980 1570 ntBASIC25.35■■□□□ 1.65
HNF4AP41235 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
HNF4AP41235 CHML-205ENST00000638160 705 ntTSL 3 BASIC25.35■■□□□ 1.65
HNF4AP41235 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC25.35■■□□□ 1.65
HNF4AP41235 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
HNF4AP41235 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC25.34■■□□□ 1.65
HNF4AP41235 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
HNF4AP41235 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
HNF4AP41235 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC25.33■■□□□ 1.64
HNF4AP41235 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
HNF4AP41235 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
HNF4AP41235 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
HNF4AP41235 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
HNF4AP41235 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
HNF4AP41235 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC25.31■■□□□ 1.64
HNF4AP41235 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC25.31■■□□□ 1.64
HNF4AP41235 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
HNF4AP41235 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC25.3■■□□□ 1.64
HNF4AP41235 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
HNF4AP41235 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC25.3■■□□□ 1.64
HNF4AP41235 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
HNF4AP41235 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
HNF4AP41235 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
HNF4AP41235 AC005559.1-201ENST00000589661 871 ntBASIC25.29■■□□□ 1.64
HNF4AP41235 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
HNF4AP41235 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
HNF4AP41235 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
HNF4AP41235 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
HNF4AP41235 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC25.28■■□□□ 1.64
HNF4AP41235 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
HNF4AP41235 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC25.28■■□□□ 1.64
HNF4AP41235 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
HNF4AP41235 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
HNF4AP41235 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC25.27■■□□□ 1.64
HNF4AP41235 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
HNF4AP41235 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
HNF4AP41235 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
HNF4AP41235 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC25.26■■□□□ 1.63
HNF4AP41235 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
HNF4AP41235 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
HNF4AP41235 AC139426.1-201ENST00000568218 2529 ntBASIC25.25■■□□□ 1.63
HNF4AP41235 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
HNF4AP41235 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC25.24■■□□□ 1.63
HNF4AP41235 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
HNF4AP41235 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
HNF4AP41235 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC25.23■■□□□ 1.63
HNF4AP41235 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC25.23■■□□□ 1.63
HNF4AP41235 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
HNF4AP41235 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
HNF4AP41235 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
HNF4AP41235 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
HNF4AP41235 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC25.22■■□□□ 1.63
HNF4AP41235 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
HNF4AP41235 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC25.21■■□□□ 1.63
HNF4AP41235 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
HNF4AP41235 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC25.21■■□□□ 1.63
HNF4AP41235 RPS2-209ENST00000529806 993 ntTSL 3 BASIC25.21■■□□□ 1.63
HNF4AP41235 DUX4L28-201ENST00000623687 678 ntBASIC25.21■■□□□ 1.63
HNF4AP41235 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC25.21■■□□□ 1.63
HNF4AP41235 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
HNF4AP41235 AP006261.1-201ENST00000584783 668 ntBASIC25.19■■□□□ 1.62
HNF4AP41235 NRG1-221ENST00000614767 762 ntTSL 5 BASIC25.19■■□□□ 1.62
HNF4AP41235 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC25.18■■□□□ 1.62
HNF4AP41235 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC25.18■■□□□ 1.62
HNF4AP41235 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
HNF4AP41235 AL162393.1-201ENST00000437852 946 ntBASIC25.18■■□□□ 1.62
HNF4AP41235 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
HNF4AP41235 MIR3665-201ENST00000578708 105 ntBASIC25.18■■□□□ 1.62
HNF4AP41235 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
HNF4AP41235 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC25.17■■□□□ 1.62
HNF4AP41235 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
HNF4AP41235 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
HNF4AP41235 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
HNF4AP41235 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC25.16■■□□□ 1.62
HNF4AP41235 AL139393.2-201ENST00000608721 2025 ntBASIC25.15■■□□□ 1.62
HNF4AP41235 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
HNF4AP41235 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
HNF4AP41235 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
HNF4AP41235 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC25.14■■□□□ 1.62
HNF4AP41235 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
HNF4AP41235 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
HNF4AP41235 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC25.13■■□□□ 1.61
HNF4AP41235 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC25.13■■□□□ 1.61
HNF4AP41235 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
HNF4AP41235 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC25.12■■□□□ 1.61
HNF4AP41235 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC25.12■■□□□ 1.61
HNF4AP41235 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
HNF4AP41235 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC25.11■■□□□ 1.61
HNF4AP41235 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms