Protein–RNA interactions for Protein: Q86X40

LRRC28, Leucine-rich repeat-containing protein 28, humanhuman

Predicted RBP Predictions only

Length 367 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28Q86X40 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
LRRC28Q86X40 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
LRRC28Q86X40 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
LRRC28Q86X40 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC23.51■■□□□ 1.35
LRRC28Q86X40 RARRES2P7-201ENST00000567349 469 ntBASIC23.5■■□□□ 1.35
LRRC28Q86X40 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
LRRC28Q86X40 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC23.5■■□□□ 1.35
LRRC28Q86X40 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC23.5■■□□□ 1.35
LRRC28Q86X40 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC23.5■■□□□ 1.35
LRRC28Q86X40 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
LRRC28Q86X40 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC23.49■■□□□ 1.35
LRRC28Q86X40 ST7-AS1-201ENST00000456775 1889 ntBASIC23.49■■□□□ 1.35
LRRC28Q86X40 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC23.48■■□□□ 1.35
LRRC28Q86X40 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
LRRC28Q86X40 KLF16-203ENST00000592313 508 ntTSL 3 BASIC23.48■■□□□ 1.35
LRRC28Q86X40 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC23.47■■□□□ 1.35
LRRC28Q86X40 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
LRRC28Q86X40 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
LRRC28Q86X40 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
LRRC28Q86X40 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
LRRC28Q86X40 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC23.46■■□□□ 1.35
LRRC28Q86X40 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC23.44■■□□□ 1.34
LRRC28Q86X40 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
LRRC28Q86X40 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
LRRC28Q86X40 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
LRRC28Q86X40 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC23.42■■□□□ 1.34
LRRC28Q86X40 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
LRRC28Q86X40 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC23.42■■□□□ 1.34
LRRC28Q86X40 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC23.41■■□□□ 1.34
LRRC28Q86X40 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
LRRC28Q86X40 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC23.41■■□□□ 1.34
LRRC28Q86X40 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC23.41■■□□□ 1.34
LRRC28Q86X40 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
LRRC28Q86X40 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
LRRC28Q86X40 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC23.39■■□□□ 1.34
LRRC28Q86X40 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
LRRC28Q86X40 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
LRRC28Q86X40 AC142086.6-201ENST00000621154 1765 ntBASIC23.38■■□□□ 1.33
LRRC28Q86X40 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC23.38■■□□□ 1.33
LRRC28Q86X40 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
LRRC28Q86X40 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC23.37■■□□□ 1.33
LRRC28Q86X40 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
LRRC28Q86X40 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC23.37■■□□□ 1.33
LRRC28Q86X40 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
LRRC28Q86X40 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
LRRC28Q86X40 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
LRRC28Q86X40 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC23.36■■□□□ 1.33
LRRC28Q86X40 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
LRRC28Q86X40 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
LRRC28Q86X40 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
LRRC28Q86X40 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC23.35■■□□□ 1.33
LRRC28Q86X40 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC23.35■■□□□ 1.33
LRRC28Q86X40 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC23.35■■□□□ 1.33
LRRC28Q86X40 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
LRRC28Q86X40 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
LRRC28Q86X40 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
LRRC28Q86X40 SETD8P1-201ENST00000623146 1180 ntBASIC23.33■■□□□ 1.33
LRRC28Q86X40 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC23.33■■□□□ 1.32
LRRC28Q86X40 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
LRRC28Q86X40 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
LRRC28Q86X40 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
LRRC28Q86X40 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
LRRC28Q86X40 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
LRRC28Q86X40 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
LRRC28Q86X40 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
LRRC28Q86X40 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC23.29■■□□□ 1.32
LRRC28Q86X40 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
LRRC28Q86X40 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC23.29■■□□□ 1.32
LRRC28Q86X40 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
LRRC28Q86X40 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
LRRC28Q86X40 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC23.28■■□□□ 1.32
LRRC28Q86X40 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
LRRC28Q86X40 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
LRRC28Q86X40 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
LRRC28Q86X40 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
LRRC28Q86X40 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
LRRC28Q86X40 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC23.27■■□□□ 1.32
LRRC28Q86X40 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC23.27■■□□□ 1.32
LRRC28Q86X40 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
LRRC28Q86X40 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC23.27■■□□□ 1.32
LRRC28Q86X40 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
LRRC28Q86X40 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
LRRC28Q86X40 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC23.26■■□□□ 1.31
LRRC28Q86X40 AC097358.2-201ENST00000607541 1159 ntBASIC23.26■■□□□ 1.31
LRRC28Q86X40 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
LRRC28Q86X40 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
LRRC28Q86X40 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
LRRC28Q86X40 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
LRRC28Q86X40 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
LRRC28Q86X40 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC23.23■■□□□ 1.31
LRRC28Q86X40 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
LRRC28Q86X40 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
LRRC28Q86X40 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC23.21■■□□□ 1.31
LRRC28Q86X40 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
LRRC28Q86X40 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC23.21■■□□□ 1.31
LRRC28Q86X40 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC23.21■■□□□ 1.31
LRRC28Q86X40 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
LRRC28Q86X40 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
LRRC28Q86X40 AC136428.2-201ENST00000563187 214 ntBASIC23.2■■□□□ 1.3
LRRC28Q86X40 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms