Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ABCB10P1-201ENST00000614297 2181 ntBASIC31.56■■■□□ 2.64
HMGB1P09429 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC31.55■■■□□ 2.64
HMGB1P09429 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC31.55■■■□□ 2.64
HMGB1P09429 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
HMGB1P09429 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC31.54■■■□□ 2.64
HMGB1P09429 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
HMGB1P09429 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC31.54■■■□□ 2.64
HMGB1P09429 EBPL-202ENST00000378268 680 ntTSL 3 BASIC31.53■■■□□ 2.64
HMGB1P09429 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC31.53■■■□□ 2.64
HMGB1P09429 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC31.52■■■□□ 2.64
HMGB1P09429 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
HMGB1P09429 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
HMGB1P09429 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC31.52■■■□□ 2.64
HMGB1P09429 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
HMGB1P09429 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
HMGB1P09429 ST7-AS1-201ENST00000456775 1889 ntBASIC31.5■■■□□ 2.63
HMGB1P09429 AL135925.1-201ENST00000605920 1701 ntBASIC31.49■■■□□ 2.63
HMGB1P09429 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
HMGB1P09429 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
HMGB1P09429 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC31.48■■■□□ 2.63
HMGB1P09429 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
HMGB1P09429 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
HMGB1P09429 DENR-202ENST00000455982 1052 ntTSL 5 BASIC31.47■■■□□ 2.63
HMGB1P09429 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
HMGB1P09429 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
HMGB1P09429 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC31.44■■■□□ 2.62
HMGB1P09429 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
HMGB1P09429 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
HMGB1P09429 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
HMGB1P09429 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC31.43■■■□□ 2.62
HMGB1P09429 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
HMGB1P09429 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC31.41■■■□□ 2.62
HMGB1P09429 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC31.41■■■□□ 2.62
HMGB1P09429 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
HMGB1P09429 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC31.41■■■□□ 2.62
HMGB1P09429 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
HMGB1P09429 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC31.4■■■□□ 2.62
HMGB1P09429 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.61
HMGB1P09429 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
HMGB1P09429 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC31.38■■■□□ 2.61
HMGB1P09429 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC31.38■■■□□ 2.61
HMGB1P09429 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
HMGB1P09429 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
HMGB1P09429 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
HMGB1P09429 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC31.36■■■□□ 2.61
HMGB1P09429 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC31.35■■■□□ 2.61
HMGB1P09429 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC31.34■■■□□ 2.61
HMGB1P09429 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC31.34■■■□□ 2.61
HMGB1P09429 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC31.34■■■□□ 2.61
HMGB1P09429 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
HMGB1P09429 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
HMGB1P09429 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
HMGB1P09429 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
HMGB1P09429 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
HMGB1P09429 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
HMGB1P09429 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
HMGB1P09429 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
HMGB1P09429 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC31.3■■■□□ 2.6
HMGB1P09429 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
HMGB1P09429 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
HMGB1P09429 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
HMGB1P09429 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC31.28■■■□□ 2.6
HMGB1P09429 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC31.28■■■□□ 2.6
HMGB1P09429 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC31.27■■■□□ 2.6
HMGB1P09429 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC31.27■■■□□ 2.6
HMGB1P09429 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC31.27■■■□□ 2.6
HMGB1P09429 SUZ12P1-203ENST00000578195 985 ntBASIC31.26■■■□□ 2.59
HMGB1P09429 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC31.26■■■□□ 2.59
HMGB1P09429 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
HMGB1P09429 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
HMGB1P09429 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC31.25■■■□□ 2.59
HMGB1P09429 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
HMGB1P09429 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC31.24■■■□□ 2.59
HMGB1P09429 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
HMGB1P09429 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
HMGB1P09429 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
HMGB1P09429 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
HMGB1P09429 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
HMGB1P09429 AC010864.1-201ENST00000609407 1511 ntBASIC31.22■■■□□ 2.59
HMGB1P09429 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC31.21■■■□□ 2.59
HMGB1P09429 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
HMGB1P09429 ABCB10P3-201ENST00000561950 2166 ntBASIC31.19■■■□□ 2.58
HMGB1P09429 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC31.19■■■□□ 2.58
HMGB1P09429 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
HMGB1P09429 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC31.18■■■□□ 2.58
HMGB1P09429 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
HMGB1P09429 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC31.17■■■□□ 2.58
HMGB1P09429 MIR762-201ENST00000390236 83 ntBASIC31.17■■■□□ 2.58
HMGB1P09429 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
HMGB1P09429 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
HMGB1P09429 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC31.16■■■□□ 2.58
HMGB1P09429 CHML-205ENST00000638160 705 ntTSL 3 BASIC31.16■■■□□ 2.58
HMGB1P09429 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
HMGB1P09429 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
HMGB1P09429 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
HMGB1P09429 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
HMGB1P09429 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC31.15■■■□□ 2.58
HMGB1P09429 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC31.14■■■□□ 2.58
HMGB1P09429 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
HMGB1P09429 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms