Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 RPL23A-207ENST00000578181 593 ntTSL 25.43□□□□□ -1.547e-41■■■■■ 46.7
SMNDC1O75940 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.781e-9■■■■■ 46.7
SMNDC1O75940 DEAF1-207ENST00000527170 1623 ntTSL 1 (best)15.1■□□□□ 0.011e-9■■■■■ 46.7
SMNDC1O75940 DEAF1-212ENST00000530813 668 ntTSL 511.57□□□□□ -0.561e-9■■■■■ 46.7
SMNDC1O75940 DEAF1-204ENST00000525904 797 ntTSL 311.57□□□□□ -0.561e-9■■■■■ 46.7
SMNDC1O75940 CWF19L1-206ENST00000478047 2694 ntTSL 211.94□□□□□ -0.55e-62■■■■■ 46.5
SMNDC1O75940 CWF19L1-204ENST00000468709 2402 ntTSL 29.1□□□□□ -0.955e-62■■■■■ 46.5
SMNDC1O75940 CWF19L1-201ENST00000354105 1815 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.015e-62■■■■■ 46.5
SMNDC1O75940 CWF19L1-207ENST00000482452 1606 ntTSL 57.39□□□□□ -1.235e-62■■■■■ 46.5
SMNDC1O75940 GAS5-216ENST00000443799 897 ntTSL 58.51□□□□□ -1.056e-39■■■■■ 45.9
SMNDC1O75940 GAS5-203ENST00000416952 799 ntTSL 29.66□□□□□ -0.865e-39■■■■■ 45.8
SMNDC1O75940 GAS5-226ENST00000455838 632 ntTSL 27.65□□□□□ -1.185e-39■■■■■ 45.8
SMNDC1O75940 GAS5-211ENST00000432536 959 ntTSL 2 BASIC7.32□□□□□ -1.245e-39■■■■■ 45.8
SMNDC1O75940 GAS5-227ENST00000456293 583 ntTSL 36.46□□□□□ -1.385e-39■■■■■ 45.8
SMNDC1O75940 PPAN-206ENST00000466025 523 ntTSL 216.12■□□□□ 0.172e-21■■■■■ 45.7
SMNDC1O75940 SNORD105B-201ENST00000458770 79 ntBASIC3.24□□□□□ -1.892e-21■■■■■ 45.7
SMNDC1O75940 TBRG4-214ENST00000488222 972 ntTSL 315.55■□□□□ 0.083e-15■■■■■ 44.6
SMNDC1O75940 TBRG4-213ENST00000484326 835 ntTSL 213.86□□□□□ -0.193e-15■■■■■ 44.6
SMNDC1O75940 TMEM39A-201ENST00000319172 4369 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.953e-7■■■■■ 44.6
SMNDC1O75940 TMEM39A-202ENST00000438581 4393 ntTSL 1 (best)8.08□□□□□ -1.123e-7■■■■■ 44.6
SMNDC1O75940 TMEM39A-206ENST00000473684 3043 ntTSL 55.75□□□□□ -1.493e-7■■■■■ 44.6
SMNDC1O75940 WSB1-202ENST00000348811 1611 ntTSL 1 (best) BASIC11.37□□□□□ -0.592e-30■■■■■ 44.5
SMNDC1O75940 WSB1-201ENST00000262394 5139 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.72e-30■■■■■ 44.5
SMNDC1O75940 WSB1-204ENST00000467843 4187 ntTSL 1 (best)9.13□□□□□ -0.952e-30■■■■■ 44.5
SMNDC1O75940 RPL23A-205ENST00000472628 639 ntTSL 1 (best) BASIC9.87□□□□□ -0.836e-41■■■■■ 44.3
SMNDC1O75940 GAS5-215ENST00000442067 1114 ntTSL 26.07□□□□□ -1.445e-39■■■■■ 44.1
SMNDC1O75940 GAS5-205ENST00000422008 497 ntTSL 34.33□□□□□ -1.725e-39■■■■■ 44.1
SMNDC1O75940 SGSM3-203ENST00000427834 793 ntTSL 217.23■□□□□ 0.352e-16■■■■■ 44.1
SMNDC1O75940 SGSM3-207ENST00000469719 1029 ntTSL 513.89□□□□□ -0.192e-16■■■■■ 44.1
SMNDC1O75940 SNORD14B-201ENST00000364533 90 ntBASIC4.74□□□□□ -1.652e-35■■■■■ 43.9
SMNDC1O75940 MED24-208ENST00000479829 733 ntTSL 520.99■□□□□ 0.952e-24■■■■■ 43.8
SMNDC1O75940 MED24-221ENST00000580008 957 ntTSL 1 (best)16.62■□□□□ 0.252e-24■■■■■ 43.8
SMNDC1O75940 MED24-206ENST00000428757 1105 ntTSL 514.44□□□□□ -0.12e-24■■■■■ 43.8
SMNDC1O75940 MED24-233ENST00000585306 597 ntTSL 413.81□□□□□ -0.22e-24■■■■■ 43.8
SMNDC1O75940 MED24-216ENST00000543759 628 ntTSL 410.35□□□□□ -0.752e-24■■■■■ 43.8
SMNDC1O75940 MED24-229ENST00000582023 592 ntTSL 49.59□□□□□ -0.872e-24■■■■■ 43.8
SMNDC1O75940 MED24-223ENST00000580517 567 ntTSL 47.28□□□□□ -1.242e-24■■■■■ 43.8
SMNDC1O75940 MED24-215ENST00000537674 548 ntTSL 37.27□□□□□ -1.252e-24■■■■■ 43.8
SMNDC1O75940 MED24-218ENST00000578161 580 ntTSL 35.53□□□□□ -1.522e-24■■■■■ 43.8
SMNDC1O75940 RNU6-3P-201ENST00000384314 107 ntBASIC4.85□□□□□ -1.632e-24■■■■■ 43.8
SMNDC1O75940 SNORD42A-201ENST00000459584 64 ntBASIC6.87□□□□□ -1.312e-40■■■■■ 43.7
SMNDC1O75940 RC3H2-201ENST00000335387 3081 ntTSL 1 (best) BASIC13.93□□□□□ -0.186e-51■■■■■ 43.5
SMNDC1O75940 RC3H2-205ENST00000423239 3623 ntTSL 5 BASIC13.54□□□□□ -0.246e-51■■■■■ 43.5
SMNDC1O75940 RC3H2-210ENST00000498479 5746 ntTSL 212.37□□□□□ -0.436e-51■■■■■ 43.5
SMNDC1O75940 RC3H2-202ENST00000357244 3991 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.666e-51■■■■■ 43.5
SMNDC1O75940 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.726e-51■■■■■ 43.5
SMNDC1O75940 SNORD90-201ENST00000391145 111 ntBASIC1.86□□□□□ -2.116e-51■■■■■ 43.5
SMNDC1O75940 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.712e-9■■■■■ 43.4
SMNDC1O75940 DCBLD2-202ENST00000326857 3959 ntTSL 1 (best) BASIC12.22□□□□□ -0.452e-9■■■■■ 43.4
SMNDC1O75940 AC017104.5-201ENST00000637647 639 ntBASIC8.91□□□□□ -0.982e-9■■■■■ 43.4
SMNDC1O75940 DCBLD2-209ENST00000494614 727 ntTSL 37.01□□□□□ -1.292e-9■■■■■ 43.4
SMNDC1O75940 RNU6-26P-201ENST00000383985 107 ntBASIC5.65□□□□□ -1.52e-9■■■■■ 43.4
SMNDC1O75940 RNU2-22P-201ENST00000411266 212 ntBASIC5.58□□□□□ -1.522e-9■■■■■ 43.4
SMNDC1O75940 DHX38-207ENST00000566329 683 ntTSL 215.6■□□□□ 0.092e-9■■■■■ 43.3
SMNDC1O75940 DHX38-212ENST00000569935 907 ntTSL 214.12□□□□□ -0.152e-9■■■■■ 43.3
SMNDC1O75940 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC13.32□□□□□ -0.286e-41■■■■■ 43.1
SMNDC1O75940 RPL23A-204ENST00000422514 1562 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.346e-41■■■■■ 43.1
SMNDC1O75940 RPL23A-201ENST00000355731 587 ntTSL 59.79□□□□□ -0.846e-41■■■■■ 43.1
SMNDC1O75940 RPL23A-202ENST00000394935 580 ntTSL 38.81□□□□□ -16e-41■■■■■ 43.1
SMNDC1O75940 RPL23A-203ENST00000394938 688 ntTSL 2 BASIC6.95□□□□□ -1.36e-41■■■■■ 43.1
SMNDC1O75940 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.72■□□□□ 0.274e-13■■■■■ 42.8
SMNDC1O75940 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.47■□□□□ 0.234e-13■■■■■ 42.8
SMNDC1O75940 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.144e-13■■■■■ 42.8
SMNDC1O75940 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.014e-13■■■■■ 42.8
SMNDC1O75940 TBRG4-204ENST00000461363 856 ntTSL 213.86□□□□□ -0.194e-13■■■■■ 42.8
SMNDC1O75940 TBRG4-209ENST00000478532 945 ntTSL 511.6□□□□□ -0.554e-13■■■■■ 42.8
SMNDC1O75940 TBRG4-217ENST00000495973 3409 ntTSL 1 (best)11.25□□□□□ -0.614e-13■■■■■ 42.8
SMNDC1O75940 ATG16L1-208ENST00000419681 644 ntTSL 514.56□□□□□ -0.081e-27■■■■■ 42.7
SMNDC1O75940 ATG16L1-217ENST00000492298 591 ntTSL 59.59□□□□□ -0.871e-27■■■■■ 42.7
SMNDC1O75940 SCARNA5-201ENST00000516201 276 ntBASIC5.76□□□□□ -1.491e-27■■■■■ 42.7
SMNDC1O75940 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.242e-7■■■■■ 42.6
SMNDC1O75940 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.76■□□□□ 0.271e-61■■■■■ 42.5
SMNDC1O75940 TERC-201ENST00000602385 541 ntBASIC15.52■□□□□ 0.081e-61■■■■■ 42.5
SMNDC1O75940 SRP68-211ENST00000592704 1941 ntTSL 225.8■■□□□ 1.722e-11■■■■■ 42.4
SMNDC1O75940 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.372e-11■■■■■ 42.4
SMNDC1O75940 TTC3-223ENST00000492275 769 ntTSL 323■■□□□ 1.271e-23■■■■■ 42.4
SMNDC1O75940 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC22.94■■□□□ 1.262e-11■■■■■ 42.4
SMNDC1O75940 TTC3-210ENST00000450533 2451 ntTSL 1 (best)22.75■■□□□ 1.231e-23■■■■■ 42.4
SMNDC1O75940 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC22.64■■□□□ 1.221e-23■■■■■ 42.4
SMNDC1O75940 TTC3-212ENST00000463216 842 ntTSL 521.79■■□□□ 1.081e-23■■■■■ 42.4
SMNDC1O75940 TTC3-224ENST00000494243 861 ntTSL 521.54■■□□□ 1.041e-23■■■■■ 42.4
SMNDC1O75940 TTC3-217ENST00000481605 1540 ntTSL 521.16■□□□□ 0.981e-23■■■■■ 42.4
SMNDC1O75940 TTC3-209ENST00000438055 3606 ntTSL 517.18■□□□□ 0.341e-23■■■■■ 42.4
SMNDC1O75940 TTC3-207ENST00000418766 3771 ntTSL 516.98■□□□□ 0.311e-23■■■■■ 42.4
SMNDC1O75940 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC16.32■□□□□ 0.21e-23■■■■■ 42.4
SMNDC1O75940 TTC3-219ENST00000485402 3626 ntTSL 515.7■□□□□ 0.11e-23■■■■■ 42.4
SMNDC1O75940 SRP68-212ENST00000602720 2037 ntTSL 2 BASIC12.88□□□□□ -0.352e-11■■■■■ 42.4
SMNDC1O75940 SRP68-205ENST00000586859 703 ntTSL 312.8□□□□□ -0.362e-11■■■■■ 42.4
SMNDC1O75940 TTC3-218ENST00000484047 1945 ntTSL 211.92□□□□□ -0.51e-23■■■■■ 42.4
SMNDC1O75940 SRP68-203ENST00000542536 1714 ntTSL 211.69□□□□□ -0.542e-11■■■■■ 42.4
SMNDC1O75940 SRP68-208ENST00000588736 2532 ntTSL 210.06□□□□□ -0.82e-11■■■■■ 42.4
SMNDC1O75940 TTC3-202ENST00000355666 7712 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.871e-23■■■■■ 42.4
SMNDC1O75940 TTC3-216ENST00000479930 8998 ntTSL 1 (best)9.18□□□□□ -0.941e-23■■■■■ 42.4
SMNDC1O75940 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.341e-23■■■■■ 42.4
SMNDC1O75940 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.61e-23■■■■■ 42.4
SMNDC1O75940 ZNF692-211ENST00000477070 1521 ntTSL 518.48■□□□□ 0.551e-19■■■■■ 42
SMNDC1O75940 ZNF692-207ENST00000468455 644 ntTSL 516.13■□□□□ 0.173e-14■■■■■ 42
SMNDC1O75940 PIK3C2A-203ENST00000531428 1593 ntTSL 1 (best)14.42□□□□□ -0.11e-9■■■■■ 42
SMNDC1O75940 ZNF692-216ENST00000491971 805 ntTSL 211.04□□□□□ -0.643e-14■■■■■ 42
SMNDC1O75940 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.391e-9■■■■■ 42
Retrieved 100 of 11,362 protein–RNA pairs in 432.3 ms