RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 NISCHQ9Y2I1 1504 aa18.22■□□□□ 0.51
TMEM39A-201ENST00000319172 DCAF8L2P0C7V8 631 aa17.09■□□□□ 0.33
TMEM39A-201ENST00000319172 SHROOM4Q9ULL8 1493 aa16.42■□□□□ 0.22
TMEM39A-201ENST00000319172 SUPT5HO00267 1087 aaKnown RBP16.23■□□□□ 0.19
TMEM39A-201ENST00000319172 ABCC9O60706 1549 aa15.47■□□□□ 0.07
TMEM39A-201ENST00000319172 EHMT2Q96KQ7 1210 aa15.36■□□□□ 0.05
TMEM39A-201ENST00000319172 CCDC180Q9P1Z9 1646 aa15.22■□□□□ 0.03
TMEM39A-201ENST00000319172 FAM9AQ8IZU1 332 aaPredicted RBP15.19■□□□□ 0.02
TMEM39A-201ENST00000319172 ZCCHC6Q5VYS8 1495 aaKnown RBP15.17■□□□□ 0.02
TMEM39A-201ENST00000319172 PABPN1Q86U42 306 aaKnown RBP eCLIP15.08■□□□□ 0
TMEM39A-201ENST00000319172 TRIM41Q8WV44 630 aa15.04■□□□□ -0
TMEM39A-201ENST00000319172 CHIC1Q5VXU3 224 aa14.9□□□□□ -0.02
TMEM39A-201ENST00000319172 SCRIBQ14160 1630 aa14.87□□□□□ -0.03
TMEM39A-201ENST00000319172 RANGAP1P46060 587 aaPredicted RBP14.76□□□□□ -0.05
TMEM39A-201ENST00000319172 TTBK1Q5TCY1 1321 aaPredicted RBP14.74□□□□□ -0.05
TMEM39A-201ENST00000319172 LOC105371045A0A1W2PR82 267 aa14.71□□□□□ -0.05
TMEM39A-201ENST00000319172 PCGF6Q9BYE7 350 aa14.69□□□□□ -0.06
TMEM39A-201ENST00000319172 UBTFP17480 764 aaKnown RBP14.65□□□□□ -0.06
TMEM39A-201ENST00000319172 APLP2Q06481 763 aa14.6□□□□□ -0.07
TMEM39A-201ENST00000319172 RB1CC1Q8TDY2 1594 aa14.58□□□□□ -0.08
TMEM39A-201ENST00000319172 DCAF1Q9Y4B6 1507 aa14.57□□□□□ -0.08
TMEM39A-201ENST00000319172 NACADO15069 1562 aa14.56□□□□□ -0.08
TMEM39A-201ENST00000319172 PPARGC1BQ86YN6 1023 aaKnown RBP14.52□□□□□ -0.08
TMEM39A-201ENST00000319172 RSF1Q96T23 1441 aaPredicted RBP14.44□□□□□ -0.1
TMEM39A-201ENST00000319172 ATP1B4Q9UN42 357 aaPredicted RBP14.41□□□□□ -0.1
TMEM39A-201ENST00000319172 CECR2Q9BXF3 1484 aa14.37□□□□□ -0.11
TMEM39A-201ENST00000319172 MYO15BQ96JP2 1530 aa14.23□□□□□ -0.13
TMEM39A-201ENST00000319172 TRIM26Q12899 539 aaPredicted RBP14.23□□□□□ -0.13
TMEM39A-201ENST00000319172 MYT1Q01538 1121 aa14.2□□□□□ -0.14
TMEM39A-201ENST00000319172 CCER1Q8TC90 406 aaPredicted RBP14.19□□□□□ -0.14
TMEM39A-201ENST00000319172 MROH2BQ7Z745 1585 aa14.17□□□□□ -0.14
TMEM39A-201ENST00000319172 BAZ1AQ9NRL2 1556 aaPredicted RBP14.16□□□□□ -0.14
TMEM39A-201ENST00000319172 CSRNP3Q8WYN3 585 aa14.15□□□□□ -0.14
TMEM39A-201ENST00000319172 BAZ1BQ9UIG0 1483 aaKnown RBP14.07□□□□□ -0.16
TMEM39A-201ENST00000319172 ITGAEP38570 1179 aa14.06□□□□□ -0.16
TMEM39A-201ENST00000319172 HNRNPUL2Q1KMD3 747 aaKnown RBP14.04□□□□□ -0.16
TMEM39A-201ENST00000319172 ZEB1P37275 1124 aaPredicted RBP14.01□□□□□ -0.17
TMEM39A-201ENST00000319172 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14□□□□□ -0.17
TMEM39A-201ENST00000319172 WIZO95785 1651 aa13.98□□□□□ -0.17
TMEM39A-201ENST00000319172 HRCP23327 699 aa13.98□□□□□ -0.17
TMEM39A-201ENST00000319172 P3H3Q8IVL6 736 aa13.94□□□□□ -0.18
TMEM39A-201ENST00000319172 CCDC88BA6NC98 1476 aa13.93□□□□□ -0.18
TMEM39A-201ENST00000319172 FBLN2P98095 1184 aa13.93□□□□□ -0.18
TMEM39A-201ENST00000319172 WRNQ14191 1432 aaPredicted RBP eCLIP13.92□□□□□ -0.18
TMEM39A-201ENST00000319172 PELP1Q8IZL8 1130 aaKnown RBP13.9□□□□□ -0.18
TMEM39A-201ENST00000319172 SMARCA4P51532 1647 aa13.84□□□□□ -0.19
TMEM39A-201ENST00000319172 ATAD2BQ9ULI0 1458 aa13.81□□□□□ -0.2
TMEM39A-201ENST00000319172 ABCC8Q09428 1581 aa13.81□□□□□ -0.2
TMEM39A-201ENST00000319172 TOP2AP11388 1531 aaKnown RBP13.81□□□□□ -0.2
TMEM39A-201ENST00000319172 SMARCA2P51531 1590 aa13.81□□□□□ -0.2
TMEM39A-201ENST00000319172 ARID3CA6NKF2 412 aa13.81□□□□□ -0.2
TMEM39A-201ENST00000319172 FAM50AQ14320 339 aaKnown RBP13.8□□□□□ -0.2
TMEM39A-201ENST00000319172 SOGA1O94964 1423 aa13.78□□□□□ -0.2
TMEM39A-201ENST00000319172 EEA1Q15075 1411 aa13.72□□□□□ -0.21
TMEM39A-201ENST00000319172 CLIP1P30622 1438 aa13.69□□□□□ -0.22
TMEM39A-201ENST00000319172 CEP162Q5TB80 1403 aa13.68□□□□□ -0.22
TMEM39A-201ENST00000319172 GOLGA3Q08378 1498 aa13.67□□□□□ -0.22
TMEM39A-201ENST00000319172 KIF27Q86VH2 1401 aa13.67□□□□□ -0.22
TMEM39A-201ENST00000319172 MYT1LQ9UL68 1186 aa13.64□□□□□ -0.23
TMEM39A-201ENST00000319172 TNIKQ9UKE5 1360 aa13.62□□□□□ -0.23
TMEM39A-201ENST00000319172 CADPSQ9ULU8 1353 aa13.61□□□□□ -0.23
TMEM39A-201ENST00000319172 CEP164Q9UPV0 1460 aa13.6□□□□□ -0.23
TMEM39A-201ENST00000319172 CUX2O14529 1486 aa13.59□□□□□ -0.23
TMEM39A-201ENST00000319172 BICRAQ9NZM4 1560 aa13.59□□□□□ -0.23
TMEM39A-201ENST00000319172 EIF4G1Q04637 1599 aaKnown RBP13.58□□□□□ -0.24
TMEM39A-201ENST00000319172 CHMP7Q8WUX9 453 aaPredicted RBP13.58□□□□□ -0.24
TMEM39A-201ENST00000319172 YTHDC1Q96MU7 727 aaKnown RBP13.55□□□□□ -0.24
TMEM39A-201ENST00000319172 TRIM52Q96A61 297 aa13.55□□□□□ -0.24
TMEM39A-201ENST00000319172 RUSC2Q8N2Y8 1516 aa13.54□□□□□ -0.24
TMEM39A-201ENST00000319172 ERCC6Q03468 1493 aa13.54□□□□□ -0.24
TMEM39A-201ENST00000319172 NEUROD1Q13562 356 aa13.54□□□□□ -0.24
TMEM39A-201ENST00000319172 NCAPD3P42695 1498 aa13.53□□□□□ -0.24
TMEM39A-201ENST00000319172 CARMIL1Q5VZK9 1371 aa13.51□□□□□ -0.25
TMEM39A-201ENST00000319172 ZNF777Q9ULD5 760 aaPredicted RBP13.5□□□□□ -0.25
TMEM39A-201ENST00000319172 TDRD9Q8NDG6 1382 aaKnown RBP13.5□□□□□ -0.25
TMEM39A-201ENST00000319172 PDS5BQ9NTI5 1447 aa13.49□□□□□ -0.25
TMEM39A-201ENST00000319172 CENPBP07199 599 aaPredicted RBP13.46□□□□□ -0.26
TMEM39A-201ENST00000319172 CDK11AQ9UQ88 783 aaPredicted RBP13.46□□□□□ -0.26
TMEM39A-201ENST00000319172 FANCD2Q9BXW9 1451 aa13.43□□□□□ -0.26
TMEM39A-201ENST00000319172 POLR3GLQ9BT43 218 aa13.43□□□□□ -0.26
TMEM39A-201ENST00000319172 MTUS2Q5JR59 1369 aa13.43□□□□□ -0.26
TMEM39A-201ENST00000319172 UNC13AQ9UPW8 1703 aa13.42□□□□□ -0.26
TMEM39A-201ENST00000319172 DIEXFQ68CQ4 756 aaKnown RBP13.41□□□□□ -0.26
TMEM39A-201ENST00000319172 CHIC2Q9UKJ5 165 aa13.41□□□□□ -0.26
TMEM39A-201ENST00000319172 RAPGEF2Q9Y4G8 1499 aa13.4□□□□□ -0.26
TMEM39A-201ENST00000319172 SLC24A1O60721 1099 aa13.39□□□□□ -0.27
TMEM39A-201ENST00000319172 DNAJC5BQ9UF47 199 aa13.39□□□□□ -0.27
TMEM39A-201ENST00000319172 CNGB1Q14028 1251 aaPredicted RBP13.38□□□□□ -0.27
TMEM39A-201ENST00000319172 CC2D2AQ9P2K1 1620 aa13.36□□□□□ -0.27
TMEM39A-201ENST00000319172 NESP48681 1621 aa13.34□□□□□ -0.27
TMEM39A-201ENST00000319172 KANK4Q5T7N3 995 aaPredicted RBP13.33□□□□□ -0.28
TMEM39A-201ENST00000319172 VPS8Q8N3P4 1428 aa13.33□□□□□ -0.28
TMEM39A-201ENST00000319172 ZNF326Q5BKZ1 582 aaKnown RBP13.32□□□□□ -0.28
TMEM39A-201ENST00000319172 CFTRP13569 1480 aa13.32□□□□□ -0.28
TMEM39A-201ENST00000319172 FGD5Q6ZNL6 1462 aa13.31□□□□□ -0.28
TMEM39A-201ENST00000319172 HMGXB3Q12766 1538 aa13.3□□□□□ -0.28
TMEM39A-201ENST00000319172 RAD54L2Q9Y4B4 1467 aa13.3□□□□□ -0.28
TMEM39A-201ENST00000319172 SYNJ1O43426 1573 aa13.29□□□□□ -0.28
TMEM39A-201ENST00000319172 ZNF316A6NFI3 1004 aaPredicted RBP13.29□□□□□ -0.28
TMEM39A-201ENST00000319172 RRP7BPQ9NSQ0 103 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms